Wall clock time and date at job start Tue Mar 31 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31593 * 1 3 3 Si 1.86805 * 119.99734 * 2 1 4 4 H 1.48510 * 109.46957 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47415 * 299.99366 * 3 2 1 6 6 H 1.48496 * 109.47425 * 60.00226 * 3 2 1 7 7 C 1.38780 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99860 * 187.11410 * 7 2 1 9 9 N 1.36822 * 119.99996 * 7.11070 * 7 2 1 10 10 C 1.46513 * 124.88852 * 354.16587 * 9 7 2 11 11 C 1.53758 * 105.20051 * 180.02562 * 10 9 7 12 12 C 1.51242 * 104.45535 * 0.02562 * 11 10 9 13 13 C 1.37835 * 130.92611 * 179.97438 * 12 11 10 14 14 C 1.39416 * 120.06398 * 180.02562 * 13 12 11 15 15 C 1.48302 * 120.20295 * 180.02562 * 14 13 12 16 16 C 1.39423 * 120.11047 * 359.69866 * 15 14 13 17 17 C 1.37986 * 119.92437 * 179.74490 * 16 15 14 18 18 C 1.38322 * 120.14907 * 0.50941 * 17 16 15 19 19 C 1.38535 * 120.23096 * 359.76529 * 18 17 16 20 20 F 1.35096 * 119.95984 * 179.97438 * 19 18 17 21 21 C 1.38251 * 120.07450 * 359.97438 * 19 18 17 22 22 C 1.39500 * 119.60110 * 359.96977 * 14 13 12 23 23 C 1.37472 * 120.12796 * 0.02562 * 22 14 13 24 24 C 1.38934 * 108.47253 * 359.97438 * 12 11 10 25 25 H 0.97006 * 119.99770 * 5.00123 * 1 2 3 26 26 H 1.08991 * 110.29491 * 61.10418 * 10 9 7 27 27 H 1.08991 * 110.29361 * 298.96366 * 10 9 7 28 28 H 1.09003 * 110.43915 * 241.25273 * 11 10 9 29 29 H 1.09001 * 110.43321 * 118.74358 * 11 10 9 30 30 H 1.08001 * 119.96883 * 359.97438 * 13 12 11 31 31 H 1.08002 * 120.03892 * 359.97438 * 16 15 14 32 32 H 1.08003 * 119.92782 * 180.25320 * 17 16 15 33 33 H 1.08001 * 119.88416 * 179.74061 * 18 17 16 34 34 H 1.07999 * 120.07597 * 179.97438 * 21 19 18 35 35 H 1.08000 * 119.93450 * 180.27971 * 22 14 13 36 36 H 1.08004 * 119.78553 * 179.97438 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 3.7100 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0099 -1.2019 0.0005 8 1 3.0837 -1.2054 0.1164 9 7 1.3337 -2.3823 -0.1456 10 6 -0.1250 -2.5128 -0.1882 11 6 -0.3903 -4.0173 -0.3624 12 6 0.9869 -4.6409 -0.4055 13 6 1.3791 -5.9549 -0.5450 14 6 2.7343 -6.2820 -0.5548 15 6 3.1597 -7.6947 -0.7053 16 6 2.2051 -8.7030 -0.8314 17 6 2.6053 -10.0156 -0.9765 18 6 3.9512 -10.3345 -0.9865 19 6 4.9050 -9.3383 -0.8560 20 9 6.2181 -9.6559 -0.8661 21 6 4.5147 -8.0195 -0.7155 22 6 3.6878 -5.2723 -0.4234 23 6 3.2919 -3.9632 -0.2847 24 6 1.9318 -3.6309 -0.2742 25 1 -0.4850 0.8369 -0.0732 26 1 -0.5298 -1.9572 -1.0340 27 1 -0.5637 -2.1568 0.7439 28 1 -0.9227 -4.2044 -1.2949 29 1 -0.9567 -4.4044 0.4846 30 1 0.6358 -6.7320 -0.6460 31 1 1.1536 -8.4566 -0.8192 32 1 1.8659 -10.7962 -1.0782 33 1 4.2596 -11.3637 -1.0962 34 1 5.2582 -7.2429 -0.6133 35 1 4.7392 -5.5191 -0.4349 36 1 4.0349 -3.1859 -0.1829 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000464786504.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:46 Heat of formation + Delta-G solvation = 14.385230 kcal Electronic energy + Delta-G solvation = -20638.174994 eV Core-core repulsion = 17387.261527 eV Total energy + Delta-G solvation = -3250.913467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.69007 -39.64122 -38.54395 -35.84860 -33.20152 -31.53839 -31.00879 -30.26674 -28.20373 -27.43722 -25.12531 -22.98188 -22.74917 -21.16723 -20.65299 -19.82694 -17.67372 -17.18055 -16.21562 -15.85277 -15.66953 -15.37593 -14.73122 -14.70345 -14.56703 -14.07203 -13.62229 -13.28646 -12.96176 -12.59371 -12.46094 -12.18626 -11.89591 -11.84567 -11.51843 -11.43862 -11.25917 -11.10994 -10.98478 -10.59417 -10.56611 -10.41237 -9.81323 -9.76157 -9.16709 -8.60912 -8.31725 -7.96118 -6.74982 -6.57378 -3.87676 1.19760 1.47331 2.39779 2.56348 3.01610 3.03444 3.07696 3.80927 3.93750 4.47297 4.60419 4.66096 4.95724 4.98748 5.07923 5.32697 5.42366 5.57824 5.63137 5.67448 5.79865 5.99468 6.06327 6.16588 6.21424 6.35370 6.38996 6.42173 6.58248 6.66789 6.76866 6.96600 6.97380 7.01301 7.07993 7.13560 7.29314 7.43337 7.51038 7.56727 7.95224 8.30471 8.90405 9.36089 10.30373 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.031966 B = 0.003646 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.711136 B = 7678.678266 C = 8529.729356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.026 3.974 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.291 4.291 8 H 0.106 0.894 9 N -0.416 5.416 10 C 0.141 3.859 11 C -0.088 4.088 12 C -0.220 4.220 13 C -0.019 4.019 14 C -0.209 4.209 15 C 0.051 3.949 16 C -0.155 4.155 17 C -0.081 4.081 18 C -0.195 4.195 19 C 0.106 3.894 20 F -0.148 7.148 21 C -0.180 4.180 22 C -0.035 4.035 23 C -0.213 4.213 24 C 0.192 3.808 25 H 0.275 0.725 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.107 0.893 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.626 -10.824 -1.295 11.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.179 4.179 3 Si 0.762 3.238 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.418 4.418 8 H 0.123 0.877 9 N -0.094 5.094 10 C 0.018 3.982 11 C -0.126 4.126 12 C -0.226 4.226 13 C -0.038 4.038 14 C -0.213 4.213 15 C 0.050 3.950 16 C -0.173 4.173 17 C -0.099 4.099 18 C -0.215 4.215 19 C 0.086 3.914 20 F -0.127 7.127 21 C -0.200 4.200 22 C -0.054 4.054 23 C -0.237 4.237 24 C 0.067 3.933 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.125 0.875 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.338 -10.122 -1.166 10.276 hybrid contribution 0.593 0.844 -0.014 1.032 sum 1.931 -9.278 -1.181 9.550 Atomic orbital electron populations 1.70030 1.05941 1.28630 1.45993 1.25401 0.95932 1.00138 0.96400 0.85686 0.79544 0.80321 0.78257 1.18969 1.20170 1.20303 1.19766 0.93171 0.81998 1.46887 0.87656 1.43207 1.05086 1.02840 1.58292 1.21884 0.80980 0.92054 1.03327 1.21167 0.94647 0.95775 1.00983 1.19498 0.94340 0.92990 1.15808 1.19969 0.94124 0.93621 0.96102 1.17691 0.92966 0.90214 1.20425 1.18610 0.91260 0.93065 0.92045 1.21222 0.99777 0.92180 1.04142 1.20814 0.94691 0.96429 0.98008 1.20894 0.93084 0.98579 1.08904 1.17612 0.77350 0.93807 1.02582 1.91452 1.33446 1.93683 1.94135 1.21105 0.97017 0.94460 1.07374 1.20507 0.97460 0.91746 0.95728 1.19882 0.93013 0.95797 1.15019 1.18452 0.92951 0.85503 0.96376 0.91442 0.90369 0.90680 0.91543 0.91580 0.87686 0.85590 0.85785 0.85810 0.85055 0.87517 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.45 10.27 55.49 0.57 -20.88 16 2 C 0.03 0.63 5.47 -17.45 -0.10 0.53 16 3 Si 0.94 18.76 29.56 -169.99 -5.03 13.73 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.29 -7.23 9.93 -15.12 -0.15 -7.38 16 8 H 0.11 2.54 7.18 -52.48 -0.38 2.16 16 9 N -0.42 -10.06 3.17 -112.54 -0.36 -10.41 16 10 C 0.14 3.11 5.55 -3.64 -0.02 3.09 16 11 C -0.09 -1.65 6.95 -27.22 -0.19 -1.84 16 12 C -0.22 -4.49 6.22 -104.25 -0.65 -5.14 16 13 C -0.02 -0.34 9.42 -39.29 -0.37 -0.71 16 14 C -0.21 -3.79 5.88 -104.85 -0.62 -4.41 16 15 C 0.05 0.82 5.88 -104.91 -0.62 0.20 16 16 C -0.15 -2.18 9.43 -39.23 -0.37 -2.55 16 17 C -0.08 -1.00 10.03 -39.64 -0.40 -1.40 16 18 C -0.20 -2.52 10.02 -39.44 -0.40 -2.92 16 19 C 0.11 1.55 7.29 -39.47 -0.29 1.26 16 20 F -0.15 -2.19 17.26 2.25 0.04 -2.15 16 21 C -0.18 -2.79 9.41 -39.17 -0.37 -3.16 16 22 C -0.03 -0.65 9.40 -39.39 -0.37 -1.02 16 23 C -0.21 -4.45 9.73 -39.20 -0.38 -4.84 16 24 C 0.19 4.32 6.64 -83.67 -0.56 3.77 16 25 H 0.28 6.37 8.32 -40.82 -0.34 6.03 16 26 H 0.08 1.81 7.31 -51.93 -0.38 1.43 16 27 H 0.07 1.74 7.57 -51.93 -0.39 1.35 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.11 1.64 6.21 -52.49 -0.33 1.31 16 31 H 0.13 1.59 6.21 -52.49 -0.33 1.27 16 32 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.13 1.92 6.21 -52.49 -0.33 1.60 16 35 H 0.11 1.73 6.21 -52.49 -0.33 1.40 16 36 H 0.11 2.15 7.45 -52.48 -0.39 1.76 16 LS Contribution 303.91 15.07 4.58 4.58 Total: -1.00 -25.68 303.91 -9.70 -35.38 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -3.67 Total: 6.25 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -5.83 Total: -26.50 kcal Atomic # 7 Polarization: -31.51 SS G_CDS: 0.21 Total: -31.29 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -25.68 -9.70 -35.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000464786504.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.761 kcal (2) G-P(sol) polarization free energy of solvation -25.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds