Wall clock time and date at job start Tue Mar 31 2020 05:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40566 * 126.52259 * 294.44312 * 3 2 1 5 5 N 1.30781 * 108.75266 * 180.02562 * 4 3 2 6 6 N 1.39908 * 109.48742 * 359.97438 * 5 4 3 7 7 C 1.36377 * 132.19553 * 180.02562 * 6 5 4 8 8 C 1.35722 * 119.14194 * 180.02562 * 7 6 5 9 9 C 1.50704 * 120.31057 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.46875 * 90.00216 * 9 8 7 11 11 C 1.36939 * 120.00018 * 89.99933 * 10 9 8 12 12 H 1.07998 * 119.99493 * 215.09152 * 11 10 9 13 13 C 1.38811 * 120.00063 * 35.09358 * 11 10 9 14 14 N 1.31615 * 120.00221 * 21.76852 * 13 11 10 15 15 Si 1.86798 * 119.99804 * 201.77488 * 13 11 10 16 16 H 1.48503 * 109.47123 * 179.97438 * 15 13 11 17 17 H 1.48499 * 109.46892 * 299.99800 * 15 13 11 18 18 H 1.48502 * 109.47434 * 59.99897 * 15 13 11 19 19 C 1.46494 * 119.99963 * 269.99692 * 10 9 8 20 20 C 1.53004 * 117.50070 * 191.63999 * 19 10 9 21 21 C 1.52995 * 117.50069 * 122.97887 * 19 10 9 22 22 C 1.40013 * 119.37318 * 0.25438 * 8 7 6 23 23 N 1.31473 * 120.12962 * 359.43719 * 22 8 7 24 24 C 1.33404 * 120.85374 * 0.60845 * 23 22 8 25 25 H 1.08006 * 125.62418 * 0.02562 * 4 3 2 26 26 H 1.08001 * 120.43330 * 0.02562 * 7 6 5 27 27 H 1.08996 * 109.47482 * 329.99761 * 9 8 7 28 28 H 1.09001 * 109.46600 * 209.99794 * 9 8 7 29 29 H 0.96996 * 120.00148 * 179.97438 * 14 13 11 30 30 H 1.09003 * 115.55265 * 337.30952 * 19 10 9 31 31 H 1.08997 * 117.49630 * 359.97438 * 20 19 10 32 32 H 1.09000 * 117.49652 * 145.02158 * 20 19 10 33 33 H 1.09003 * 117.50087 * 214.97992 * 21 19 10 34 34 H 1.09002 * 117.49889 * 359.97438 * 21 19 10 35 35 H 1.08001 * 119.93544 * 179.73038 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4047 -0.4664 1.0284 5 7 4.6501 -0.3002 0.6652 6 7 4.6918 0.2783 -0.6080 7 6 5.7290 0.6450 -1.4140 8 6 5.4619 1.1959 -2.6253 9 6 6.5879 1.6112 -3.5368 10 7 6.9535 0.4885 -4.4041 11 6 6.3361 0.3303 -5.6161 12 1 6.1338 -0.6612 -5.9936 13 6 5.9704 1.4441 -6.3594 14 7 6.5639 2.5998 -6.1487 15 14 4.6358 1.3027 -7.6587 16 1 4.4333 2.6238 -8.3061 17 1 5.0444 0.3070 -8.6818 18 1 3.3681 0.8652 -7.0207 19 6 7.9796 -0.4648 -3.9747 20 6 8.5128 -1.4472 -5.0196 21 6 7.5869 -1.9419 -3.9055 22 6 4.1305 1.3800 -3.0176 23 7 3.1511 1.0112 -2.2218 24 6 3.4054 0.4697 -1.0294 25 1 3.0738 -0.8923 1.9641 26 1 6.7496 0.4991 -1.0925 27 1 7.4506 1.9041 -2.9385 28 1 6.2674 2.4540 -4.1492 29 1 6.3087 3.3780 -6.6684 30 1 8.6815 -0.0951 -3.2272 31 1 8.0998 -1.3844 -6.0263 32 1 9.5653 -1.7240 -4.9591 33 1 8.0307 -2.5441 -3.1127 34 1 6.5650 -2.2043 -4.1790 35 1 3.9077 1.8214 -3.9777 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579953620.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:59 Heat of formation + Delta-G solvation = 197.534008 kcal Electronic energy + Delta-G solvation = -21371.130010 eV Core-core repulsion = 18180.371183 eV Total energy + Delta-G solvation = -3190.758827 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.29169 -38.41867 -37.13759 -36.12970 -34.31738 -33.62056 -31.89792 -30.19521 -29.42370 -26.10769 -24.86904 -24.04188 -22.75610 -21.73103 -21.58091 -20.13879 -18.89526 -17.47024 -17.12923 -16.57072 -16.02558 -15.74545 -15.04951 -14.63396 -14.15163 -13.95827 -13.68410 -13.37039 -13.10502 -13.03216 -12.71960 -12.38927 -12.22397 -12.11814 -11.44537 -11.34076 -11.02912 -10.97493 -10.86805 -10.80760 -10.63116 -10.30410 -9.98170 -9.68998 -9.58752 -9.23269 -8.73212 -7.83852 -6.93437 -6.17119 -3.72216 0.56501 1.02495 2.02958 2.16068 2.93286 3.17875 3.26248 3.29603 3.36280 3.87060 3.92379 4.03247 4.18545 4.62785 4.68215 4.69680 4.91577 5.01285 5.07306 5.22204 5.42356 5.54844 5.64963 5.73510 5.89803 5.97923 6.15413 6.24393 6.28362 6.34973 6.42104 6.55097 6.74306 6.95039 7.11001 7.37568 7.51628 7.72461 7.89241 8.11542 8.78050 9.39350 9.93159 10.82805 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.005774 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.705177 B = 4848.009225 C = 5843.865289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.312 3.688 3 C -0.219 4.219 4 C 0.142 3.858 5 N -0.319 5.319 6 N -0.292 5.292 7 C 0.150 3.850 8 C -0.161 4.161 9 C 0.185 3.815 10 N -0.540 5.540 11 C -0.265 4.265 12 H 0.067 0.933 13 C 0.017 3.983 14 N -0.879 5.879 15 Si 0.894 3.106 16 H -0.286 1.286 17 H -0.278 1.278 18 H -0.277 1.277 19 C 0.120 3.880 20 C -0.188 4.188 21 C -0.227 4.227 22 C 0.227 3.773 23 N -0.482 5.482 24 C 0.319 3.681 25 H 0.203 0.797 26 H 0.178 0.822 27 H 0.052 0.948 28 H 0.125 0.875 29 H 0.263 0.737 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.263 -2.109 8.525 9.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.002 4.002 3 C -0.238 4.238 4 C -0.041 4.041 5 N -0.140 5.140 6 N -0.058 5.058 7 C 0.014 3.986 8 C -0.171 4.171 9 C 0.057 3.943 10 N -0.254 5.254 11 C -0.394 4.394 12 H 0.085 0.915 13 C -0.184 4.184 14 N -0.520 5.520 15 Si 0.722 3.278 16 H -0.211 1.211 17 H -0.204 1.204 18 H -0.203 1.203 19 C 0.011 3.989 20 C -0.227 4.227 21 C -0.267 4.267 22 C 0.048 3.952 23 N -0.194 5.194 24 C 0.082 3.918 25 H 0.220 0.780 26 H 0.195 0.805 27 H 0.070 0.930 28 H 0.142 0.858 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.822 -2.065 8.748 9.026 hybrid contribution -0.189 -0.296 -0.837 0.908 sum 0.632 -2.361 7.911 8.280 Atomic orbital electron populations 1.81200 1.11527 1.11935 1.08373 1.24126 0.90806 0.92211 0.93095 1.14966 0.85793 1.25249 0.97751 1.23870 0.88479 0.93696 0.98044 1.77594 1.20093 1.23541 0.92819 1.46904 1.06673 1.38664 1.13569 1.22129 0.92583 0.94848 0.89041 1.22262 1.00172 1.00734 0.93884 1.20107 0.90424 0.93724 0.90085 1.43402 1.38726 1.27762 1.15503 1.18978 1.33104 0.92632 0.94707 0.91502 1.25137 0.99395 0.96473 0.97403 1.69905 1.39372 1.01095 1.41597 0.86496 0.82268 0.77411 0.81616 1.21122 1.20362 1.20255 1.21195 0.93220 0.85731 0.98712 1.23077 0.97372 1.05604 0.96606 1.23402 1.00005 1.01767 1.01570 1.23718 0.87490 0.87061 0.96970 1.68268 1.35354 1.14370 1.01421 1.20370 0.83550 0.95880 0.92016 0.78005 0.80450 0.93000 0.85839 0.92728 0.89071 0.88132 0.90468 0.90726 0.89806 0.79857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.03 18.54 41.84 0.78 -7.25 16 2 C 0.31 5.07 15.84 -22.47 -0.36 4.71 16 3 C -0.22 -3.31 6.03 -106.15 -0.64 -3.95 16 4 C 0.14 1.74 11.93 -17.12 -0.20 1.53 16 5 N -0.32 -4.52 12.58 30.76 0.39 -4.13 16 6 N -0.29 -4.50 3.87 -11.95 -0.05 -4.54 16 7 C 0.15 2.15 10.94 -16.43 -0.18 1.97 16 8 C -0.16 -2.54 5.44 -104.86 -0.57 -3.11 16 9 C 0.18 3.23 5.48 -5.19 -0.03 3.21 16 10 N -0.54 -10.70 2.78 -167.02 -0.46 -11.17 16 11 C -0.27 -5.98 8.21 -15.06 -0.12 -6.10 16 12 H 0.07 1.58 7.14 -52.49 -0.37 1.20 16 13 C 0.02 0.40 4.97 -17.43 -0.09 0.31 16 14 N -0.88 -20.88 11.31 55.49 0.63 -20.25 16 15 Si 0.89 18.80 29.61 -169.99 -5.03 13.77 16 16 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 19 C 0.12 2.11 6.60 -67.93 -0.45 1.66 16 20 C -0.19 -3.24 9.79 -26.69 -0.26 -3.50 16 21 C -0.23 -3.77 10.16 -26.70 -0.27 -4.04 16 22 C 0.23 3.80 10.97 -17.04 -0.19 3.61 16 23 N -0.48 -8.51 10.47 -11.97 -0.13 -8.64 16 24 C 0.32 5.34 7.88 -155.73 -1.23 4.11 16 25 H 0.20 1.53 8.06 -52.48 -0.42 1.11 16 26 H 0.18 2.08 8.06 -52.49 -0.42 1.65 16 27 H 0.05 0.81 7.99 -51.93 -0.41 0.39 16 28 H 0.12 2.47 5.30 -51.93 -0.28 2.20 16 29 H 0.26 6.11 8.31 -40.82 -0.34 5.77 16 30 H 0.09 1.41 8.11 -51.93 -0.42 0.99 16 31 H 0.10 1.95 6.80 -51.93 -0.35 1.60 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.18 3.01 8.06 -52.49 -0.42 2.59 16 LS Contribution 316.97 15.07 4.78 4.78 Total: -1.00 -26.51 316.97 -7.20 -33.70 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -3.51 Total: 3.34 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -4.58 Total: 0.40 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 1.15 Total: -55.99 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.51 -7.20 -33.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579953620.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.239 kcal (2) G-P(sol) polarization free energy of solvation -26.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 204.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 197.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds