Wall clock time and date at job start Tue Mar 31 2020 06:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47251 * 2 1 4 4 H 1.08998 * 109.47103 * 185.54629 * 3 2 1 5 5 C 1.50697 * 109.47108 * 305.54325 * 3 2 1 6 6 H 1.07997 * 120.00019 * 116.62842 * 5 3 2 7 7 C 1.37880 * 120.00451 * 296.62842 * 5 3 2 8 8 N 1.31524 * 119.99539 * 352.49684 * 7 5 3 9 9 Si 1.86794 * 120.00348 * 172.49866 * 7 5 3 10 10 H 1.48507 * 109.47211 * 180.02562 * 9 7 5 11 11 H 1.48496 * 109.47130 * 299.99758 * 9 7 5 12 12 H 1.48498 * 109.47059 * 60.00211 * 9 7 5 13 13 N 1.46897 * 109.47243 * 65.54466 * 3 2 1 14 14 C 1.46903 * 110.99853 * 87.04304 * 13 3 2 15 15 C 1.53005 * 109.46993 * 184.55305 * 14 13 3 16 16 S 1.81400 * 109.46942 * 180.02562 * 15 14 13 17 17 C 1.76202 * 102.99653 * 179.97438 * 16 15 14 18 18 C 1.38942 * 120.05451 * 359.72754 * 17 16 15 19 19 C 1.38108 * 119.93974 * 179.71844 * 18 17 16 20 20 C 1.38477 * 120.05578 * 0.55855 * 19 18 17 21 21 F 1.35094 * 119.94390 * 179.70005 * 20 19 18 22 22 C 1.38478 * 120.10967 * 359.71397 * 20 19 18 23 23 C 1.38098 * 120.05586 * 0.02562 * 22 20 19 24 24 H 1.09005 * 109.47044 * 303.33015 * 1 2 3 25 25 H 1.09004 * 109.47453 * 63.32616 * 1 2 3 26 26 H 1.09001 * 109.47292 * 183.32790 * 1 2 3 27 27 H 1.09010 * 109.47067 * 240.00258 * 2 1 3 28 28 H 1.08997 * 109.47302 * 120.00296 * 2 1 3 29 29 H 0.96991 * 119.99879 * 355.69992 * 8 7 5 30 30 H 1.00907 * 110.99625 * 323.09062 * 13 3 2 31 31 H 1.08999 * 109.47178 * 304.54968 * 14 13 3 32 32 H 1.08993 * 109.47013 * 64.55592 * 14 13 3 33 33 H 1.09002 * 109.46671 * 300.00582 * 15 14 13 34 34 H 1.09001 * 109.46699 * 59.99720 * 15 14 13 35 35 H 1.07990 * 120.02817 * 359.97438 * 18 17 16 36 36 H 1.08002 * 119.96816 * 180.25125 * 19 18 17 37 37 H 1.07999 * 119.97044 * 179.97438 * 22 20 19 38 38 H 1.08002 * 120.02657 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1254 1.4441 -0.0993 5 6 1.4288 2.1914 -1.1561 6 1 0.7767 3.0321 -0.9706 7 6 1.7019 1.8034 -2.4506 8 7 2.6076 0.8783 -2.6826 9 14 0.7859 2.5916 -3.8750 10 1 1.2595 2.0039 -5.1540 11 1 -0.6703 2.3423 -3.7256 12 1 1.0400 4.0547 -3.8779 13 7 1.6627 2.0953 1.2607 14 6 2.6715 1.8540 2.3010 15 6 2.1911 2.4508 3.6254 16 16 3.4372 2.1535 4.9098 17 6 2.7211 2.8989 6.3367 18 6 1.4803 3.5180 6.2499 19 6 0.9186 4.0965 7.3711 20 6 1.5962 4.0700 8.5785 21 9 1.0473 4.6418 9.6725 22 6 2.8355 3.4585 8.6663 23 6 3.3991 2.8740 7.5492 24 1 -0.3633 0.5647 0.8587 25 1 -0.3634 0.4613 -0.9183 26 1 -0.3634 -1.0259 0.0597 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.1273 0.5137 -1.9492 30 1 0.7495 1.7927 1.5654 31 1 2.8218 0.7809 2.4193 32 1 3.6117 2.3229 2.0110 33 1 2.0406 3.5238 3.5070 34 1 1.2508 1.9819 3.9153 35 1 0.9537 3.5432 5.3074 36 1 -0.0478 4.5743 7.3051 37 1 3.3622 3.4395 9.6089 38 1 4.3659 2.3975 7.6181 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582071279.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:01 Heat of formation + Delta-G solvation = -32.837739 kcal Electronic energy + Delta-G solvation = -18959.273382 eV Core-core repulsion = 15841.756125 eV Total energy + Delta-G solvation = -3117.517257 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.14107 -39.06283 -37.09659 -33.67028 -31.65912 -31.17094 -30.81712 -28.93442 -25.53171 -23.64134 -23.49138 -23.06809 -21.91877 -19.66068 -18.20365 -17.50954 -16.79633 -16.50567 -15.85671 -15.67279 -15.13059 -14.80248 -14.24644 -14.01390 -13.85400 -13.65803 -13.57733 -13.27027 -12.91539 -12.70266 -12.47033 -11.93886 -11.55269 -11.42813 -11.35211 -11.10431 -10.79063 -10.37192 -10.26138 -10.13648 -10.08087 -9.91269 -9.78148 -9.49100 -8.70511 -8.30430 -7.55671 -7.44921 -6.33349 -4.02689 0.71022 0.87620 1.31429 2.27421 3.18278 3.44467 3.45196 3.64121 3.96974 4.37158 4.51374 4.52147 4.85597 4.87055 4.91927 5.00859 5.33124 5.36010 5.37424 5.50302 5.55323 5.78647 5.82783 5.87220 5.95299 6.06856 6.07235 6.11758 6.27995 6.48475 6.62892 6.91134 6.95521 7.19279 7.25103 7.80850 8.18616 8.32039 8.59671 8.88286 9.64806 11.02343 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.033268 B = 0.002846 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.455734 B = 9837.550530 C =10120.740483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.152 4.152 3 C 0.205 3.795 4 H 0.025 0.975 5 C -0.572 4.572 6 H 0.056 0.944 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 1.064 2.936 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.672 5.672 14 C 0.074 3.926 15 C -0.103 4.103 16 S -0.104 6.104 17 C -0.090 4.090 18 C -0.106 4.106 19 C -0.131 4.131 20 C 0.085 3.915 21 F -0.141 7.141 22 C -0.135 4.135 23 C -0.076 4.076 24 H 0.035 0.965 25 H 0.069 0.931 26 H 0.026 0.974 27 H 0.070 0.930 28 H 0.020 0.980 29 H 0.268 0.732 30 H 0.328 0.672 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.008 3.082 20.115 20.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.192 4.192 3 C 0.097 3.903 4 H 0.043 0.957 5 C -0.611 4.611 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.551 5.551 9 Si 0.893 3.107 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.304 5.304 14 C -0.057 4.057 15 C -0.252 4.252 16 S 0.141 5.859 17 C -0.203 4.203 18 C -0.130 4.130 19 C -0.152 4.152 20 C 0.063 3.937 21 F -0.120 7.120 22 C -0.155 4.155 23 C -0.100 4.100 24 H 0.054 0.946 25 H 0.088 0.912 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.147 0.853 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.131 3.057 18.046 18.303 hybrid contribution -1.307 -0.148 2.330 2.675 sum -1.177 2.909 20.375 20.615 Atomic orbital electron populations 1.21544 0.96626 0.98323 1.01973 1.22214 0.96292 1.01051 0.99607 1.19338 0.95638 0.88660 0.86669 0.95709 1.21811 1.31570 1.16712 0.90973 0.92586 1.25718 0.96960 0.96063 0.99736 1.70811 1.21148 1.27184 1.35991 0.83606 0.75596 0.75636 0.75861 1.20962 1.21513 1.21490 1.60892 1.03428 1.63024 1.03055 1.21615 0.97692 0.97689 0.88733 1.23809 0.99277 1.05888 0.96236 1.85584 1.29549 1.70314 1.00497 1.21925 0.97862 1.02385 0.98146 1.21157 0.94567 0.98153 0.99122 1.21069 1.01061 1.01689 0.91363 1.17677 0.93668 0.98868 0.83492 1.91495 1.85492 1.82626 1.52361 1.21057 0.94685 0.99810 0.99977 1.20631 0.99943 0.99228 0.90153 0.94646 0.91161 0.95450 0.91170 0.96130 0.92050 0.85339 0.95210 0.90630 0.88395 0.89689 0.84505 0.84383 0.84304 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.38 37.16 0.35 -2.22 16 2 C -0.15 -3.36 5.46 -26.73 -0.15 -3.50 16 3 C 0.21 4.86 1.97 -68.87 -0.14 4.73 16 4 H 0.03 0.65 7.24 -51.93 -0.38 0.28 16 5 C -0.57 -15.25 7.33 -34.44 -0.25 -15.50 16 6 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 7 C 0.02 0.52 5.25 -17.81 -0.09 0.42 16 8 N -0.91 -26.49 12.90 55.43 0.72 -25.77 16 9 Si 1.06 24.58 29.91 -169.99 -5.08 19.49 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.67 -13.34 6.27 -107.95 -0.68 -14.02 16 14 C 0.07 1.23 5.48 -3.82 -0.02 1.20 16 15 C -0.10 -1.36 4.55 37.16 0.17 -1.19 16 16 S -0.10 -1.29 21.92 -107.50 -2.36 -3.65 16 17 C -0.09 -1.00 6.11 -39.06 -0.24 -1.24 16 18 C -0.11 -1.12 9.36 -39.37 -0.37 -1.48 16 19 C -0.13 -1.29 10.02 -39.54 -0.40 -1.68 16 20 C 0.09 0.86 7.30 -39.40 -0.29 0.57 16 21 F -0.14 -1.49 17.26 2.25 0.04 -1.46 16 22 C -0.13 -1.22 10.02 -39.54 -0.40 -1.62 16 23 C -0.08 -0.74 9.79 -39.37 -0.39 -1.12 16 24 H 0.03 0.64 6.34 -51.93 -0.33 0.31 16 25 H 0.07 1.57 7.20 -51.93 -0.37 1.20 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 1.73 6.26 -51.92 -0.32 1.40 16 28 H 0.02 0.41 7.44 -51.93 -0.39 0.02 16 29 H 0.27 7.73 6.01 -40.82 -0.25 7.48 16 30 H 0.33 6.09 6.46 -39.29 -0.25 5.84 16 31 H 0.03 0.50 7.43 -51.93 -0.39 0.12 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.10 1.27 7.73 -51.92 -0.40 0.87 16 34 H 0.08 1.02 7.76 -51.92 -0.40 0.62 16 35 H 0.14 1.34 5.88 -52.49 -0.31 1.03 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 325.62 15.07 4.91 4.91 Total: -1.00 -28.45 325.62 -9.77 -38.22 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.11 Total: 4.91 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -2.20 Total: -22.63 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.04 Total: -39.79 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.08 Total: 19.49 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -2.36 Total: -3.65 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.45 -9.77 -38.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582071279.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.380 kcal (2) G-P(sol) polarization free energy of solvation -28.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds