Wall clock time and date at job start Tue Mar 31 2020 05:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00067 * 2 1 4 4 H 1.48494 * 109.47364 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47237 * 300.00385 * 3 2 1 6 6 H 1.48502 * 109.47012 * 59.99931 * 3 2 1 7 7 C 1.37882 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99818 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99956 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47059 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47029 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47253 * 179.97438 * 12 11 10 14 14 O 1.21289 * 120.00084 * 0.02562 * 13 12 11 15 15 N 1.34782 * 120.00283 * 179.97438 * 13 12 11 16 16 C 1.39916 * 120.00202 * 184.62226 * 15 13 12 17 17 C 1.38840 * 120.04542 * 144.90763 * 16 15 13 18 18 C 1.38353 * 119.95622 * 179.97438 * 17 16 15 19 19 F 1.35099 * 119.97729 * 179.97438 * 18 17 16 20 20 C 1.38467 * 120.04346 * 0.02562 * 18 17 16 21 21 C 1.38472 * 120.08809 * 359.97438 * 20 18 17 22 22 F 1.35103 * 119.97640 * 179.97438 * 21 20 18 23 23 C 1.38345 * 120.04931 * 0.02562 * 21 20 18 24 24 H 0.96995 * 120.00377 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46657 * 59.99939 * 9 7 2 26 26 H 1.09002 * 109.47148 * 300.00504 * 9 7 2 27 27 H 1.09002 * 109.47043 * 59.99811 * 10 9 7 28 28 H 1.08999 * 109.46948 * 300.00301 * 10 9 7 29 29 H 1.08997 * 109.47288 * 60.00059 * 11 10 9 30 30 H 1.09007 * 109.47087 * 299.99474 * 11 10 9 31 31 H 1.09004 * 109.47556 * 59.99511 * 12 11 10 32 32 H 1.09002 * 109.47437 * 299.99816 * 12 11 10 33 33 H 0.96998 * 119.99493 * 4.62335 * 15 13 12 34 34 H 1.08004 * 120.02637 * 359.70341 * 17 16 15 35 35 H 1.07993 * 119.95725 * 180.02562 * 20 18 17 36 36 H 1.07998 * 120.02436 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 6 1.7211 -7.4551 -0.0018 14 8 0.5082 -7.4552 -0.0018 15 7 2.3949 -8.6224 -0.0029 16 6 1.6987 -9.8321 -0.1005 17 6 2.2508 -10.8974 -0.7990 18 6 1.5609 -12.0930 -0.8939 19 9 2.0975 -13.1297 -1.5739 20 6 0.3205 -12.2272 -0.2934 21 6 -0.2318 -11.1658 0.4037 22 9 -1.4424 -11.2991 0.9884 23 6 0.4548 -9.9687 0.5010 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8720 -3.6044 0.8895 28 1 2.8719 -3.6043 -0.8905 29 1 0.8539 -5.0446 -0.8914 30 1 0.8533 -5.0451 0.8887 31 1 3.1013 -6.0927 0.8881 32 1 3.1011 -6.0919 -0.8918 33 1 3.3626 -8.6237 0.0641 34 1 3.2161 -10.7917 -1.2716 35 1 -0.2165 -13.1612 -0.3680 36 1 0.0234 -9.1410 1.0444 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588147477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:02 Heat of formation + Delta-G solvation = -122.841747 kcal Electronic energy + Delta-G solvation = -20564.433608 eV Core-core repulsion = 16876.800308 eV Total energy + Delta-G solvation = -3687.633300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.38852 -49.26842 -40.83393 -38.59128 -35.19747 -34.87455 -32.71348 -30.71516 -30.66977 -29.32927 -25.89408 -23.78073 -23.29584 -22.14313 -20.59441 -20.07906 -18.88726 -17.74296 -16.96765 -16.77750 -16.34403 -16.30979 -16.09742 -16.01570 -15.61651 -15.51434 -14.63464 -14.49768 -14.20849 -14.07148 -13.28589 -12.75608 -12.61508 -12.41260 -12.31114 -12.18500 -11.79302 -11.66554 -11.04241 -10.69395 -10.61663 -10.52399 -10.48888 -10.06679 -9.67592 -9.29809 -9.12998 -9.02190 -8.74129 -8.33812 -5.98324 -4.01012 0.53525 0.61259 2.31371 2.54233 3.04346 3.31162 3.38577 3.42130 3.57457 3.98720 4.39311 4.45794 4.47563 4.53822 4.65035 4.90500 5.13653 5.19647 5.37256 5.42993 5.49535 5.59319 5.70421 5.77542 5.93219 6.02953 6.18554 6.43486 6.47421 6.74909 6.91345 6.98562 7.14622 7.70523 7.83692 7.85240 8.02605 8.44119 9.06927 9.62980 11.13040 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.039198 B = 0.002403 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.155703 B =11648.441915 C =12198.277145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.106 4.106 12 C -0.136 4.136 13 C 0.513 3.487 14 O -0.507 6.507 15 N -0.679 5.679 16 C 0.212 3.788 17 C -0.196 4.196 18 C 0.150 3.850 19 F -0.129 7.129 20 C -0.212 4.212 21 C 0.152 3.848 22 F -0.127 7.127 23 C -0.171 4.171 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.417 0.583 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.320 -25.688 -0.083 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.144 4.144 12 C -0.176 4.176 13 C 0.303 3.697 14 O -0.380 6.380 15 N -0.325 5.325 16 C 0.115 3.885 17 C -0.218 4.218 18 C 0.129 3.871 19 F -0.108 7.108 20 C -0.233 4.233 21 C 0.132 3.868 22 F -0.105 7.105 23 C -0.192 4.192 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.254 0.746 34 H 0.164 0.836 35 H 0.166 0.834 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.281 -25.500 -0.096 26.041 hybrid contribution 0.797 0.662 -0.050 1.037 sum 6.078 -24.838 -0.147 25.571 Atomic orbital electron populations 1.69979 1.06061 1.26464 1.50929 1.25048 0.94842 0.99281 0.95431 0.86552 0.80061 0.83898 0.77576 1.19779 1.21034 1.21040 1.21307 0.93010 0.91158 1.50402 0.92689 1.19102 0.94050 0.91278 0.97358 1.21648 0.99109 0.93823 1.00193 1.21501 0.96999 0.92649 1.03204 1.21846 1.00245 0.90862 1.04643 1.21495 0.88681 0.85301 0.74267 1.90736 1.14122 1.87080 1.46103 1.43785 1.11153 1.03802 1.73783 1.17067 0.92088 0.85712 0.93595 1.20851 1.03602 0.92625 1.04696 1.16826 0.91819 0.84425 0.93990 1.91542 1.85666 1.56337 1.77237 1.20977 0.96988 1.01052 1.04269 1.17027 0.81633 0.93545 0.94622 1.91555 1.41073 1.96226 1.81643 1.21367 0.96187 0.98019 1.03610 0.93056 0.96559 0.96566 0.93356 0.93372 0.91597 0.91583 0.88460 0.88441 0.74623 0.83601 0.83377 0.82176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.49 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.14 5.15 -26.73 -0.14 -2.28 16 11 C -0.11 -1.72 4.50 -26.73 -0.12 -1.84 16 12 C -0.14 -1.52 5.70 -27.89 -0.16 -1.67 16 13 C 0.51 6.07 7.67 -10.98 -0.08 5.98 16 14 O -0.51 -8.08 13.42 5.55 0.07 -8.00 16 15 N -0.68 -5.71 5.34 -9.88 -0.05 -5.76 16 16 C 0.21 2.02 6.30 -83.72 -0.53 1.49 16 17 C -0.20 -1.56 9.94 -39.32 -0.39 -1.95 16 18 C 0.15 1.29 7.30 -39.45 -0.29 1.00 16 19 F -0.13 -1.14 17.27 2.25 0.04 -1.10 16 20 C -0.21 -1.88 10.00 -39.41 -0.39 -2.27 16 21 C 0.15 1.59 7.29 -39.46 -0.29 1.30 16 22 F -0.13 -1.44 17.27 2.25 0.04 -1.40 16 23 C -0.17 -1.92 8.67 -39.32 -0.34 -2.26 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 30 H 0.07 1.15 8.10 -51.92 -0.42 0.73 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.42 1.94 8.82 -40.82 -0.36 1.58 16 34 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 35 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.16 2.07 6.22 -52.49 -0.33 1.75 16 LS Contribution 321.77 15.07 4.85 4.85 Total: -1.00 -32.92 321.77 -7.07 -39.98 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -4.45 Total: -3.00 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -3.28 Total: -15.68 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.68 Total: -32.26 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.07 Total: -8.00 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.08 Total: -2.50 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.92 -7.07 -39.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.858 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds