Wall clock time and date at job start Tue Mar 31 2020 05:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00116 * 2 1 4 4 H 1.48501 * 109.47294 * 240.00216 * 3 2 1 5 5 H 1.48503 * 109.46978 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46866 * 120.00033 * 3 2 1 7 7 C 1.37874 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00154 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47060 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99997 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47053 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.46907 * 66.28031 * 12 11 10 14 14 C 1.47015 * 111.00099 * 47.60943 * 13 12 11 15 15 C 1.53099 * 109.25950 * 177.60599 * 14 13 12 16 16 O 1.43024 * 109.29077 * 56.82861 * 15 14 13 17 17 C 1.43013 * 113.73376 * 301.39829 * 16 15 14 18 18 H 1.09000 * 109.50883 * 298.64479 * 17 16 15 19 19 C 1.53002 * 109.50256 * 178.55875 * 17 16 15 20 20 F 1.39898 * 109.47396 * 300.08653 * 19 17 16 21 21 F 1.39905 * 109.46845 * 180.08459 * 19 17 16 22 22 F 1.39899 * 109.47443 * 60.08935 * 19 17 16 23 23 C 1.47016 * 111.00243 * 283.97705 * 13 12 11 24 24 H 0.97004 * 119.99576 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47277 * 59.99774 * 9 7 2 26 26 H 1.09003 * 109.46888 * 299.99702 * 9 7 2 27 27 H 1.09000 * 109.46861 * 59.99818 * 11 10 9 28 28 H 1.09001 * 109.47131 * 299.99777 * 11 10 9 29 29 H 1.08992 * 109.46995 * 306.27807 * 12 11 10 30 30 H 1.08995 * 109.46607 * 186.27790 * 12 11 10 31 31 H 1.09003 * 109.50896 * 297.54134 * 14 13 12 32 32 H 1.09000 * 109.50686 * 57.63191 * 14 13 12 33 33 H 1.08999 * 109.50916 * 176.78367 * 15 14 13 34 34 H 1.08998 * 109.50981 * 296.87107 * 15 14 13 35 35 H 1.08998 * 109.50975 * 62.45450 * 23 13 12 36 36 H 1.09000 * 109.53663 * 302.34972 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 8 2.1795 -3.5853 -0.0027 11 6 1.5649 -4.8754 -0.0032 12 6 2.6479 -5.9563 -0.0049 13 7 3.3890 -5.9088 1.2626 14 6 2.4698 -5.8451 2.4082 15 6 3.2802 -5.8576 3.7071 16 8 4.2076 -4.7689 3.6958 17 6 5.1177 -4.7993 2.5931 18 1 5.7166 -5.7088 2.6404 19 6 6.0374 -3.5782 2.6559 20 9 5.2680 -2.4113 2.5951 21 9 6.9261 -3.6077 1.5757 22 9 6.7591 -3.5990 3.8542 23 6 4.3260 -4.7761 1.2830 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8881 27 1 0.9445 -4.9819 -0.8931 28 1 0.9451 -4.9830 0.8869 29 1 3.3339 -5.7819 -0.8337 30 1 2.1833 -6.9358 -0.1177 31 1 1.8834 -4.9279 2.3539 32 1 1.8017 -6.7061 2.3871 33 1 2.6065 -5.7530 4.5575 34 1 3.8245 -6.7985 3.7876 35 1 3.7693 -3.8418 1.2106 36 1 5.0133 -4.8564 0.4408 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590161139.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:50 Heat of formation + Delta-G solvation = -235.597620 kcal Electronic energy + Delta-G solvation = -24198.170120 eV Core-core repulsion = 20074.878134 eV Total energy + Delta-G solvation = -4123.291986 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.90972 -47.48572 -47.30518 -39.83838 -37.31281 -35.30900 -32.71038 -32.08620 -29.94349 -27.61337 -26.78824 -24.84578 -23.47578 -22.43226 -21.78713 -20.11028 -18.40711 -18.15265 -17.88316 -16.50016 -16.28394 -15.96643 -15.62395 -15.45275 -14.99808 -14.57993 -14.32548 -14.25249 -14.07872 -13.91311 -13.81894 -13.52693 -13.48861 -13.40715 -12.83935 -12.26515 -12.03774 -11.95136 -11.66313 -11.31606 -11.15147 -10.91826 -10.84830 -10.69499 -10.61624 -10.14519 -9.85809 -9.17446 -8.90220 -8.30184 -8.12734 -6.13553 -4.15506 2.58860 3.32547 3.34849 3.36832 3.39607 3.71105 4.09455 4.19529 4.34516 4.58726 4.70107 4.86429 4.89538 5.04225 5.19950 5.23340 5.23690 5.44081 5.46540 5.56863 5.68365 5.83764 5.93404 5.99697 6.17055 6.41856 6.78635 6.95847 6.98938 7.01717 7.34921 7.75277 8.09178 8.46309 8.96030 9.49713 10.97804 Molecular weight = 283.12amu Principal moments of inertia in cm(-1) A = 0.014610 B = 0.006811 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.995167 B = 4110.273183 C = 5319.921975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.058 3.942 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.197 3.803 10 O -0.392 6.392 11 C 0.020 3.980 12 C 0.058 3.942 13 N -0.527 5.527 14 C 0.004 3.996 15 C 0.071 3.929 16 O -0.365 6.365 17 C 0.054 3.946 18 H 0.102 0.898 19 C 0.464 3.536 20 F -0.162 7.162 21 F -0.177 7.177 22 F -0.181 7.181 23 C 0.008 3.992 24 H 0.265 0.735 25 H 0.005 0.995 26 H 0.003 0.997 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.812 -13.942 5.155 16.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.123 3.877 10 O -0.312 6.312 11 C -0.059 4.059 12 C -0.069 4.069 13 N -0.250 5.250 14 C -0.124 4.124 15 C -0.006 4.006 16 O -0.284 6.284 17 C -0.006 4.006 18 H 0.119 0.881 19 C 0.409 3.591 20 F -0.144 7.144 21 F -0.158 7.158 22 F -0.163 7.163 23 C -0.120 4.120 24 H 0.074 0.926 25 H 0.022 0.978 26 H 0.021 0.979 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.146 -14.049 5.337 17.094 hybrid contribution -0.407 1.582 -0.291 1.659 sum 7.739 -12.467 5.046 15.517 Atomic orbital electron populations 1.69951 1.06111 1.27309 1.50423 1.24926 0.94955 0.99432 0.95008 0.86428 0.79395 0.81916 0.79018 1.19969 1.21125 1.19812 1.20974 0.93961 0.89236 1.51057 0.91604 1.20199 0.88710 0.83547 0.95277 1.87837 1.35451 1.12968 1.94976 1.23061 0.96198 0.86698 0.99936 1.22298 0.95584 0.97426 0.91622 1.62477 1.18034 1.41647 1.02885 1.22931 0.95700 1.02859 0.90943 1.22747 0.90995 0.89103 0.97707 1.88007 1.46802 1.49282 1.44296 1.23131 0.92208 0.94887 0.90400 0.88064 1.20098 0.79889 0.85610 0.73479 1.93301 1.74515 1.50760 1.95785 1.93190 1.70066 1.96715 1.55830 1.93177 1.79452 1.96779 1.46857 1.23012 0.96781 0.97316 0.94918 0.92588 0.97763 0.97899 0.93906 0.93869 0.89825 0.89458 0.91820 0.89469 0.87647 0.92065 0.87688 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.51 -15.02 9.43 -34.44 -0.32 -15.34 16 8 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 9 C 0.20 5.28 5.69 36.01 0.20 5.48 16 10 O -0.39 -8.85 7.51 -35.23 -0.26 -9.11 16 11 C 0.02 0.34 5.49 37.16 0.20 0.55 16 12 C 0.06 0.79 6.04 -3.82 -0.02 0.77 16 13 N -0.53 -7.24 4.94 -234.31 -1.16 -8.40 16 14 C 0.00 0.05 4.80 -3.71 -0.02 0.03 16 15 C 0.07 0.83 7.01 37.21 0.26 1.09 16 16 O -0.37 -5.52 10.36 -35.23 -0.37 -5.88 16 17 C 0.05 0.77 2.78 -26.68 -0.07 0.69 16 18 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 19 C 0.46 7.20 2.85 37.16 0.11 7.31 16 20 F -0.16 -3.08 16.69 2.25 0.04 -3.04 16 21 F -0.18 -2.61 16.87 2.25 0.04 -2.57 16 22 F -0.18 -2.73 17.26 2.25 0.04 -2.69 16 23 C 0.01 0.12 4.28 -3.71 -0.02 0.10 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.00 0.13 8.14 -51.93 -0.42 -0.30 16 26 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.73 5.97 -51.93 -0.31 0.42 16 29 H 0.08 1.14 7.92 -51.93 -0.41 0.73 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.02 6.23 -51.93 -0.32 0.70 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.11 2.09 5.19 -51.93 -0.27 1.82 16 36 H 0.09 1.35 7.80 -51.93 -0.41 0.95 16 LS Contribution 305.97 15.07 4.61 4.61 Total: -1.00 -31.46 305.97 -5.77 -37.23 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -4.65 Total: -3.39 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 0.22 Total: 2.26 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: -0.42 Total: -34.58 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.63 Total: -14.99 kcal Atomic # 9 Polarization: -8.41 SS G_CDS: 0.11 Total: -8.30 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.46 -5.77 -37.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590161139.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.370 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds