Wall clock time and date at job start Tue Mar 31 2020 06:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39909 * 109.47016 * 2 1 4 4 F 1.39903 * 109.47651 * 240.00333 * 2 1 3 5 5 C 1.53000 * 109.47511 * 119.99708 * 2 1 3 6 6 C 1.52997 * 109.47477 * 180.02562 * 5 2 1 7 7 C 1.50695 * 109.47217 * 180.02562 * 6 5 2 8 8 O 1.21290 * 119.99981 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00190 * 179.97438 * 7 6 5 10 10 C 1.39943 * 120.00270 * 174.89330 * 9 7 6 11 11 C 1.39288 * 119.94924 * 145.78163 * 10 9 7 12 12 C 1.38486 * 120.42930 * 179.97438 * 11 10 9 13 13 C 1.37688 * 120.32041 * 359.97438 * 12 11 10 14 14 C 1.40741 * 119.88462 * 0.02562 * 13 12 11 15 15 C 1.41416 * 120.20909 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00059 * 205.17667 * 15 14 13 17 17 C 1.39927 * 119.99759 * 25.18092 * 15 14 13 18 18 N 1.30837 * 120.00511 * 16.79779 * 17 15 14 19 19 Si 1.86801 * 119.99944 * 196.79970 * 17 15 14 20 20 H 1.48498 * 109.47031 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47222 * 119.99926 * 19 17 15 22 22 H 1.48503 * 109.47098 * 239.99627 * 19 17 15 23 23 C 1.38242 * 119.94355 * 325.50551 * 10 9 7 24 24 H 1.08999 * 109.47278 * 299.99876 * 1 2 3 25 25 H 1.08997 * 109.46965 * 60.00599 * 1 2 3 26 26 H 1.09006 * 109.46690 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46922 * 60.00139 * 5 2 1 28 28 H 1.09001 * 109.46921 * 300.00941 * 5 2 1 29 29 H 1.08999 * 109.46975 * 300.00209 * 6 5 2 30 30 H 1.08998 * 109.47251 * 59.99949 * 6 5 2 31 31 H 0.96993 * 120.00087 * 354.89263 * 9 7 6 32 32 H 1.07998 * 119.78564 * 359.97438 * 11 10 9 33 33 H 1.07994 * 119.84033 * 179.97438 * 12 11 10 34 34 H 1.08003 * 120.06080 * 179.97438 * 13 12 11 35 35 H 0.96990 * 120.00342 * 180.02562 * 18 17 15 36 36 H 1.07999 * 120.16072 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0401 -0.7212 1.2492 6 6 3.5700 -0.7206 1.2496 7 6 4.0724 -1.4315 2.4797 8 8 3.2842 -1.8936 3.2774 9 7 5.3974 -1.5547 2.6929 10 6 5.8648 -2.1191 3.8852 11 6 7.0266 -2.8875 3.8822 12 6 7.4983 -3.4502 5.0563 13 6 6.8235 -3.2555 6.2406 14 6 5.6483 -2.4814 6.2590 15 6 4.9495 -2.2774 7.4714 16 1 3.8920 -2.0585 7.4549 17 6 5.6282 -2.3590 8.6923 18 7 6.9346 -2.2942 8.7202 19 14 4.6689 -2.5607 10.2824 20 1 3.2156 -2.6077 9.9812 21 1 5.0766 -3.8231 10.9498 22 1 4.9521 -1.4123 11.1804 23 6 5.1759 -1.9083 5.0650 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6768 -1.7488 1.2493 28 1 1.6766 -0.2074 2.1392 29 1 3.9337 -1.2342 0.3596 30 1 3.9330 0.3072 1.2497 31 1 6.0271 -1.2522 2.0200 32 1 7.5629 -3.0455 2.9582 33 1 8.3998 -4.0447 5.0430 34 1 7.1950 -3.6966 7.1538 35 1 7.4051 -2.3512 9.5665 36 1 4.2773 -1.3093 5.0690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590884468.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:47 Heat of formation + Delta-G solvation = -134.228798 kcal Electronic energy + Delta-G solvation = -21438.825256 eV Core-core repulsion = 17750.698177 eV Total energy + Delta-G solvation = -3688.127079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.13197 -47.10338 -39.74487 -37.26265 -34.59389 -34.12517 -33.03806 -30.90663 -29.82619 -28.19311 -25.38602 -25.05139 -21.99226 -21.20573 -20.77566 -19.54499 -17.80891 -17.73784 -17.24885 -16.36368 -15.87859 -15.59443 -15.43409 -15.00855 -14.58751 -14.11573 -13.74654 -13.52522 -13.42716 -13.35371 -12.94386 -12.87178 -12.73776 -12.47113 -12.13015 -11.95561 -11.66463 -11.37324 -11.16450 -11.11835 -10.99685 -10.92054 -10.45456 -10.17523 -9.67038 -9.42495 -9.08119 -8.97728 -7.45518 -6.92688 -6.71507 -4.34012 2.56921 2.82461 3.09795 3.16327 3.18891 3.32679 3.43918 3.70016 3.96439 3.98324 4.24487 4.24579 4.64517 4.82304 4.92830 5.07147 5.27629 5.31397 5.44216 5.55005 5.72152 5.77836 5.84590 6.24475 6.38951 6.75475 7.01636 7.04534 7.06569 7.25225 7.55052 7.72318 7.96969 8.08904 8.17069 8.25127 8.61518 8.72408 8.93892 8.98391 10.21690 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.023708 B = 0.003567 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.770606 B = 7847.884306 C = 8743.049286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.285 3.715 3 F -0.202 7.202 4 F -0.203 7.203 5 C -0.144 4.144 6 C -0.145 4.145 7 C 0.507 3.493 8 O -0.519 6.519 9 N -0.668 5.668 10 C 0.150 3.850 11 C -0.261 4.261 12 C -0.092 4.092 13 C -0.172 4.172 14 C 0.120 3.880 15 C -0.458 4.458 16 H 0.079 0.921 17 C 0.076 3.924 18 N -0.795 5.795 19 Si 0.908 3.092 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.210 4.210 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.399 0.601 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.279 0.721 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.210 3.939 -13.620 15.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.249 3.751 3 F -0.183 7.183 4 F -0.184 7.184 5 C -0.182 4.182 6 C -0.185 4.185 7 C 0.293 3.707 8 O -0.395 6.395 9 N -0.312 5.312 10 C 0.058 3.942 11 C -0.283 4.283 12 C -0.111 4.111 13 C -0.191 4.191 14 C 0.117 3.883 15 C -0.488 4.488 16 H 0.097 0.903 17 C -0.142 4.142 18 N -0.421 5.421 19 Si 0.732 3.268 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.232 4.232 24 H 0.109 0.891 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.233 0.767 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.137 0.863 35 H 0.090 0.910 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.592 3.663 -12.922 15.429 hybrid contribution 0.233 0.197 0.222 0.377 sum -7.359 3.861 -12.701 15.178 Atomic orbital electron populations 1.22753 0.91461 1.05605 1.05308 1.21216 0.93922 0.75702 0.84261 1.93010 1.90589 1.37829 1.96890 1.93003 1.90598 1.80986 1.53810 1.22384 0.95865 1.03618 0.96354 1.21623 0.96044 1.02874 0.97967 1.20411 0.82611 0.80210 0.87429 1.90755 1.54973 1.46980 1.46760 1.43467 1.06790 1.61348 1.19554 1.17449 0.95754 0.96866 0.84106 1.20047 1.01030 1.09668 0.97513 1.20467 0.98374 0.99350 0.92950 1.21355 0.98628 1.02491 0.96675 1.17495 0.91143 0.88001 0.91705 1.19614 0.96755 1.42468 0.89974 0.90333 1.25902 0.94832 0.92183 1.01238 1.69834 1.08351 1.35439 1.28474 0.86270 0.81141 0.78602 0.80774 1.18362 1.19708 1.20019 1.20962 1.03514 1.07320 0.91363 0.89054 0.90161 0.89112 0.87868 0.87773 0.88378 0.88190 0.76709 0.89292 0.89030 0.86301 0.90990 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.38 9.38 37.16 0.35 -1.03 16 2 C 0.29 2.81 2.11 -26.73 -0.06 2.75 16 3 F -0.20 -2.28 16.54 2.25 0.04 -2.25 16 4 F -0.20 -2.25 16.54 2.25 0.04 -2.21 16 5 C -0.14 -1.58 4.09 -26.73 -0.11 -1.69 16 6 C -0.14 -1.73 5.46 -27.89 -0.15 -1.88 16 7 C 0.51 8.70 7.56 -10.99 -0.08 8.61 16 8 O -0.52 -11.12 13.74 5.55 0.08 -11.04 16 9 N -0.67 -11.81 5.34 -9.91 -0.05 -11.86 16 10 C 0.15 3.41 6.25 -83.76 -0.52 2.88 16 11 C -0.26 -5.79 9.97 -39.10 -0.39 -6.18 16 12 C -0.09 -2.17 10.02 -39.69 -0.40 -2.57 16 13 C -0.17 -4.54 8.69 -38.84 -0.34 -4.87 16 14 C 0.12 3.30 5.57 -106.85 -0.59 2.71 16 15 C -0.46 -12.61 9.05 -37.74 -0.34 -12.96 16 16 H 0.08 2.13 7.90 -52.49 -0.41 1.72 16 17 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 18 N -0.80 -20.76 10.94 55.55 0.61 -20.15 16 19 Si 0.91 19.06 29.59 -169.99 -5.03 14.03 16 20 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 C -0.21 -5.46 8.39 -38.69 -0.32 -5.79 16 24 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.10 1.14 8.10 -51.93 -0.42 0.71 16 28 H 0.10 1.18 8.10 -51.93 -0.42 0.76 16 29 H 0.10 1.01 7.80 -51.93 -0.41 0.60 16 30 H 0.10 1.07 7.80 -51.93 -0.41 0.67 16 31 H 0.40 5.45 8.82 -40.82 -0.36 5.09 16 32 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 34 H 0.12 3.21 6.17 -52.48 -0.32 2.89 16 35 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 36 H 0.11 2.79 6.48 -52.49 -0.34 2.45 16 LS Contribution 315.72 15.07 4.76 4.76 Total: -1.00 -31.14 315.72 -6.96 -38.09 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.34 Total: 8.78 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -3.05 Total: -18.16 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.55 Total: -32.01 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.07 Total: -4.45 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.14 -6.96 -38.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590884468.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.134 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds