Wall clock time and date at job start Tue Mar 31 2020 05:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00345 * 2 1 4 4 H 1.48504 * 109.46901 * 239.99772 * 3 2 1 5 5 H 1.48501 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47596 * 119.99603 * 3 2 1 7 7 C 1.37883 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99811 * 0.02562 * 7 2 1 10 10 O 1.42910 * 110.36834 * 299.27491 * 9 7 2 11 11 C 1.54257 * 110.32628 * 61.45328 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.84329 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.50707 * 109.46999 * 74.48981 * 14 13 12 16 16 C 1.38201 * 120.00011 * 259.72779 * 15 14 13 17 17 C 1.38428 * 119.99901 * 179.85381 * 16 15 14 18 18 F 1.35102 * 120.00046 * 180.16505 * 17 16 15 19 19 C 1.38472 * 119.99797 * 0.37865 * 17 16 15 20 20 C 1.38153 * 120.00308 * 359.82821 * 19 17 16 21 21 C 1.38430 * 119.99720 * 80.00067 * 15 14 13 22 22 F 1.35096 * 120.00281 * 359.95575 * 21 15 14 23 23 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 24 24 H 0.97002 * 119.99478 * 0.02562 * 1 2 3 25 25 H 0.96699 * 114.00154 * 60.72676 * 10 9 7 26 26 H 1.09002 * 110.32715 * 237.79384 * 11 9 7 27 27 H 1.08998 * 110.32251 * 359.89910 * 11 9 7 28 28 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 29 29 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 30 30 H 1.08997 * 109.47620 * 194.49319 * 14 13 12 31 31 H 1.08999 * 109.47148 * 314.49752 * 14 13 12 32 32 H 1.08000 * 119.99939 * 359.97438 * 16 15 14 33 33 H 1.08007 * 119.99492 * 179.81140 * 19 17 16 34 34 H 1.07999 * 120.00320 * 179.97438 * 20 19 17 35 35 H 1.08999 * 110.41133 * 201.79165 * 23 13 12 36 36 H 1.09001 * 110.41003 * 79.35561 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4345 -2.6020 1.1689 11 6 0.3849 -2.6178 -1.2704 12 6 0.9178 -3.8657 -2.0067 13 7 2.3140 -4.0191 -1.5179 14 6 2.7937 -5.3933 -1.7165 15 6 3.0947 -5.6143 -3.1765 16 6 2.1842 -6.2779 -3.9770 17 6 2.4593 -6.4782 -5.3188 18 9 1.5678 -7.1239 -6.1021 19 6 3.6502 -6.0206 -5.8572 20 6 4.5623 -5.3611 -5.0560 21 6 4.2856 -5.1576 -3.7146 22 9 5.1776 -4.5131 -2.9310 23 6 2.2350 -3.6865 -0.0722 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2334 -1.9069 1.2444 26 1 -0.6629 -2.7545 -1.0032 27 1 0.5035 -1.7313 -1.8934 28 1 0.3255 -4.7428 -1.7457 29 1 0.9060 -3.7050 -3.0847 30 1 3.6996 -5.5501 -1.1310 31 1 2.0260 -6.0964 -1.3934 32 1 1.2573 -6.6384 -3.5561 33 1 3.8662 -6.1796 -6.9034 34 1 5.4913 -5.0046 -5.4758 35 1 3.2146 -3.3920 0.3043 36 1 1.8492 -4.5352 0.4926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147704.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:23 Heat of formation + Delta-G solvation = -108.159161 kcal Electronic energy + Delta-G solvation = -22398.722709 eV Core-core repulsion = 18711.726094 eV Total energy + Delta-G solvation = -3686.996615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.99904 -48.74098 -39.25328 -38.03571 -35.01558 -32.28211 -32.06822 -30.27254 -29.12661 -27.91615 -25.67487 -24.11865 -22.96027 -21.79149 -20.28015 -19.44213 -17.57870 -17.23915 -17.15032 -16.97737 -15.95357 -15.40683 -15.09122 -14.91714 -14.70567 -14.38677 -14.22982 -13.86446 -13.73930 -13.15361 -13.14202 -12.61262 -12.31965 -12.16981 -11.83834 -11.68680 -11.37448 -11.17040 -10.90212 -10.85926 -10.53746 -10.46764 -10.32036 -9.91344 -9.24809 -9.04298 -8.55093 -8.52583 -8.12100 -7.89802 -6.14119 -4.19424 0.91161 0.94175 3.27169 3.30487 3.34048 3.38361 4.04833 4.21367 4.37660 4.41479 4.61716 4.66848 4.87612 5.08068 5.14798 5.39718 5.52198 5.69775 5.74522 5.83638 5.87976 5.93800 6.02204 6.07620 6.17154 6.19004 6.33430 6.49582 6.73084 6.86392 7.04033 7.20227 7.51481 7.64484 7.65975 7.87592 8.23604 8.82913 9.44043 9.52983 10.93472 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.021735 B = 0.004700 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.937959 B = 5955.894813 C = 6312.195801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.066 3.934 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.250 3.750 10 O -0.595 6.595 11 C -0.120 4.120 12 C 0.032 3.968 13 N -0.493 5.493 14 C 0.079 3.921 15 C -0.072 4.072 16 C -0.120 4.120 17 C 0.084 3.916 18 F -0.139 7.139 19 C -0.130 4.130 20 C -0.130 4.130 21 C 0.116 3.884 22 F -0.124 7.124 23 C 0.054 3.946 24 H 0.266 0.734 25 H 0.382 0.618 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.029 0.971 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.079 0.921 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.055 -12.062 -9.422 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.080 0.920 9 C 0.210 3.790 10 O -0.404 6.404 11 C -0.159 4.159 12 C -0.096 4.096 13 N -0.218 5.218 14 C -0.049 4.049 15 C -0.074 4.074 16 C -0.139 4.139 17 C 0.064 3.936 18 F -0.118 7.118 19 C -0.149 4.149 20 C -0.149 4.149 21 C 0.096 3.904 22 F -0.103 7.103 23 C -0.074 4.074 24 H 0.076 0.924 25 H 0.233 0.767 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.097 0.903 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.651 -12.110 -9.575 16.440 hybrid contribution -0.517 0.898 0.109 1.041 sum 5.134 -11.213 -9.466 15.547 Atomic orbital electron populations 1.69688 1.05901 1.27379 1.51214 1.24998 0.94977 0.99385 0.94147 0.86538 0.79557 0.82453 0.78765 1.20146 1.21316 1.20165 1.21604 0.93548 0.90347 1.50167 0.91989 1.19230 0.86385 0.91483 0.81869 1.86083 1.52038 1.55802 1.46453 1.22856 0.98276 0.95512 0.99276 1.23229 0.88152 0.98540 0.99630 1.65396 1.21729 1.19183 1.15453 1.21156 1.01285 0.92009 0.90467 1.19751 0.92643 0.97599 0.97410 1.20929 1.00494 1.00695 0.91787 1.17594 0.88793 0.98249 0.88941 1.91501 1.66985 1.79182 1.74106 1.20907 0.92806 1.00157 1.01039 1.20974 1.01144 1.00889 0.91875 1.17490 0.88277 0.95893 0.88783 1.91546 1.66054 1.78658 1.74002 1.23007 1.00643 0.97466 0.86244 0.92436 0.76712 0.93020 0.90592 0.95241 0.91667 0.89530 0.93353 0.84098 0.84049 0.83827 0.90264 0.94924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.30 10.82 55.43 0.60 -23.70 16 2 C 0.07 1.77 5.02 -17.82 -0.09 1.68 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.09 8.10 -34.44 -0.28 -14.37 16 8 H 0.06 1.70 7.53 -52.49 -0.40 1.31 16 9 C 0.25 6.23 1.05 -90.39 -0.10 6.14 16 10 O -0.59 -15.45 12.94 -35.23 -0.46 -15.91 16 11 C -0.12 -2.80 5.55 -25.35 -0.14 -2.95 16 12 C 0.03 0.62 6.07 -2.09 -0.01 0.61 16 13 N -0.49 -9.57 5.32 -231.26 -1.23 -10.80 16 14 C 0.08 1.22 4.69 -4.97 -0.02 1.20 16 15 C -0.07 -1.02 5.07 -104.56 -0.53 -1.55 16 16 C -0.12 -1.50 9.57 -39.53 -0.38 -1.87 16 17 C 0.08 0.99 7.30 -39.43 -0.29 0.70 16 18 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 19 C -0.13 -1.35 10.02 -39.53 -0.40 -1.74 16 20 C -0.13 -1.44 10.02 -39.53 -0.40 -1.83 16 21 C 0.12 1.60 7.24 -39.42 -0.29 1.32 16 22 F -0.12 -1.94 16.66 2.25 0.04 -1.91 16 23 C 0.05 1.16 5.74 -2.18 -0.01 1.15 16 24 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.38 10.05 7.33 45.56 0.33 10.39 16 26 H 0.05 1.20 7.98 -51.93 -0.41 0.79 16 27 H 0.08 1.95 7.23 -51.93 -0.38 1.57 16 28 H 0.03 0.53 7.75 -51.93 -0.40 0.12 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.09 1.28 7.89 -51.93 -0.41 0.87 16 31 H 0.05 0.68 7.63 -51.93 -0.40 0.29 16 32 H 0.14 1.59 8.03 -52.49 -0.42 1.17 16 33 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.08 1.74 7.67 -51.93 -0.40 1.34 16 36 H 0.03 0.68 7.94 -51.93 -0.41 0.26 16 LS Contribution 308.88 15.07 4.65 4.65 Total: -1.00 -28.20 308.88 -8.00 -36.20 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -3.69 Total: 8.51 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -2.93 Total: -11.51 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: -0.63 Total: -34.49 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.46 Total: -15.91 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.08 Total: -3.55 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.20 -8.00 -36.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147704.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.958 kcal (2) G-P(sol) polarization free energy of solvation -28.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds