Wall clock time and date at job start Tue Mar 31 2020 05:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00195 * 2 1 4 4 H 1.48498 * 109.47182 * 270.00230 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.00327 * 3 2 1 6 6 H 1.48501 * 109.47310 * 150.00235 * 3 2 1 7 7 C 1.37879 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99593 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00494 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.27297 * 59.29726 * 9 7 2 11 11 C 1.54596 * 110.31037 * 297.21578 * 9 7 2 12 12 C 1.55188 * 102.80434 * 219.04695 * 11 9 7 13 13 N 1.48537 * 103.23604 * 37.42997 * 12 11 9 14 14 C 1.46905 * 110.99725 * 200.25613 * 13 12 11 15 15 C 1.50693 * 109.47473 * 307.39863 * 14 13 12 16 16 C 1.38423 * 120.02545 * 269.72561 * 15 14 13 17 17 F 1.35104 * 120.00757 * 359.97438 * 16 15 14 18 18 C 1.38475 * 119.97432 * 179.69969 * 16 15 14 19 19 C 1.38204 * 120.02268 * 0.59670 * 18 16 15 20 20 C 1.38205 * 120.05202 * 359.67959 * 19 18 16 21 21 C 1.38423 * 120.02770 * 90.00284 * 15 14 13 22 22 F 1.35095 * 120.00991 * 359.97438 * 21 15 14 23 23 C 1.47904 * 105.82101 * 320.76937 * 13 12 11 24 24 H 0.96995 * 119.99733 * 0.02562 * 1 2 3 25 25 H 0.96700 * 114.00311 * 300.70718 * 10 9 7 26 26 H 1.09006 * 110.72287 * 337.38099 * 11 9 7 27 27 H 1.09001 * 110.72819 * 100.66392 * 11 9 7 28 28 H 1.09006 * 110.68590 * 278.98515 * 12 11 9 29 29 H 1.08997 * 110.78774 * 155.92766 * 12 11 9 30 30 H 1.09007 * 109.46854 * 67.39951 * 14 13 12 31 31 H 1.09006 * 109.46779 * 187.39426 * 14 13 12 32 32 H 1.08004 * 119.98421 * 180.32182 * 18 16 15 33 33 H 1.08004 * 119.97177 * 179.70193 * 19 18 16 34 34 H 1.08005 * 119.98644 * 180.02562 * 20 19 18 35 35 H 1.08997 * 109.91742 * 265.97719 * 23 13 12 36 36 H 1.08994 * 110.07733 * 144.77482 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4103 -2.5855 -1.1528 11 6 0.4090 -2.6327 1.2891 12 6 0.5665 -4.1341 1.6487 13 7 1.9781 -4.4239 1.2886 14 6 2.1883 -5.8657 1.1018 15 6 1.6870 -6.6077 2.3139 16 6 2.5412 -6.8611 3.3732 17 9 3.8251 -6.4438 3.3207 18 6 2.0777 -7.5376 4.4891 19 6 0.7662 -7.9704 4.5401 20 6 -0.0860 -7.7229 3.4806 21 6 0.3735 -7.0414 2.3663 22 9 -0.4599 -6.7992 1.3310 23 6 2.2341 -3.6840 0.0338 24 1 -0.4849 0.8400 -0.0004 25 1 -0.2441 -1.8765 -1.2163 26 1 0.8130 -2.0014 2.0806 27 1 -0.6354 -2.3886 1.0949 28 1 -0.1148 -4.7453 1.0568 29 1 0.4001 -4.2963 2.7137 30 1 1.6433 -6.2011 0.2194 31 1 3.2520 -6.0636 0.9689 32 1 2.7426 -7.7308 5.3179 33 1 0.4069 -8.5021 5.4088 34 1 -1.1109 -8.0613 3.5218 35 1 2.0612 -4.3350 -0.8231 36 1 3.2599 -3.3159 0.0192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150441.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:36 Heat of formation + Delta-G solvation = -105.690955 kcal Electronic energy + Delta-G solvation = -22784.912410 eV Core-core repulsion = 19098.022825 eV Total energy + Delta-G solvation = -3686.889586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.02450 -48.90910 -39.17839 -38.05821 -35.00129 -32.10674 -32.05360 -30.36416 -29.21413 -27.95311 -25.64626 -23.98563 -22.91304 -21.95304 -20.13182 -19.37639 -18.14313 -17.32420 -17.03684 -16.23896 -16.00513 -15.58568 -15.26593 -14.97794 -14.83188 -14.59956 -14.30615 -13.84692 -13.73349 -13.16062 -12.80188 -12.52012 -12.09672 -12.06420 -11.93653 -11.59883 -11.45511 -11.20609 -10.90323 -10.87786 -10.53599 -10.42565 -10.27593 -9.90224 -9.15813 -8.99064 -8.81597 -8.54906 -8.06273 -7.75778 -6.16007 -4.22050 0.88614 0.90919 3.25444 3.26899 3.33530 3.37972 3.87576 4.35149 4.35517 4.45431 4.58207 4.67185 4.79553 5.03786 5.12574 5.48775 5.56367 5.72674 5.81336 5.85299 5.87693 6.00496 6.02496 6.12613 6.16115 6.30406 6.43330 6.50886 6.69192 6.96196 7.08212 7.30305 7.54741 7.65046 7.69765 7.87488 8.20233 8.79548 9.44522 9.54859 10.91741 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.026751 B = 0.004789 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.438464 B = 5844.820531 C = 6252.403740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.244 3.756 10 O -0.594 6.594 11 C -0.115 4.115 12 C 0.023 3.977 13 N -0.505 5.505 14 C 0.083 3.917 15 C -0.144 4.144 16 C 0.147 3.853 17 F -0.124 7.124 18 C -0.169 4.169 19 C -0.067 4.067 20 C -0.168 4.168 21 C 0.135 3.865 22 F -0.125 7.125 23 C 0.054 3.946 24 H 0.266 0.734 25 H 0.383 0.617 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.037 0.963 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.296 -15.371 8.274 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.080 0.920 9 C 0.204 3.796 10 O -0.404 6.404 11 C -0.154 4.154 12 C -0.105 4.105 13 N -0.230 5.230 14 C -0.045 4.045 15 C -0.146 4.146 16 C 0.127 3.873 17 F -0.102 7.102 18 C -0.188 4.188 19 C -0.085 4.085 20 C -0.187 4.187 21 C 0.115 3.885 22 F -0.103 7.103 23 C -0.073 4.073 24 H 0.076 0.924 25 H 0.233 0.767 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.056 0.944 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.900 -15.583 8.508 17.777 hybrid contribution -0.405 1.284 -0.619 1.482 sum 0.495 -14.299 7.888 16.338 Atomic orbital electron populations 1.69662 1.05948 1.27347 1.51047 1.25010 0.94992 0.99438 0.93909 0.86463 0.79893 0.82716 0.78162 1.20562 1.21165 1.19751 1.21696 0.93537 0.90590 1.50756 0.91968 1.19342 0.86446 0.91436 0.82377 1.86092 1.52089 1.54849 1.47355 1.22997 1.00755 0.91311 1.00325 1.23503 0.88433 0.99443 0.99071 1.64998 1.22804 1.03933 1.31235 1.21117 1.01482 0.89583 0.92312 1.19939 0.92974 1.03016 0.98650 1.17167 0.79310 0.96643 0.94168 1.91540 1.34375 1.87900 1.96408 1.21183 0.97529 1.02002 0.98089 1.20781 0.92118 0.97740 0.97903 1.21161 1.01748 1.02443 0.93345 1.17271 0.87141 0.98305 0.85752 1.91529 1.70400 1.92070 1.56340 1.22891 1.00703 0.95236 0.88451 0.92404 0.76659 0.91464 0.91627 0.93703 0.92312 0.93246 0.89478 0.84162 0.84143 0.84170 0.94434 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.50 10.87 55.43 0.60 -23.89 16 2 C 0.07 1.84 5.26 -17.82 -0.09 1.74 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.52 8.11 -34.44 -0.28 -14.80 16 8 H 0.06 1.71 7.34 -52.48 -0.39 1.32 16 9 C 0.24 6.26 0.99 -90.42 -0.09 6.17 16 10 O -0.59 -15.93 12.92 -35.23 -0.46 -16.38 16 11 C -0.12 -2.79 5.42 -24.73 -0.13 -2.92 16 12 C 0.02 0.48 4.97 -1.76 -0.01 0.47 16 13 N -0.51 -10.37 5.39 -231.72 -1.25 -11.62 16 14 C 0.08 1.42 4.86 -4.98 -0.02 1.40 16 15 C -0.14 -2.16 4.60 -104.49 -0.48 -2.64 16 16 C 0.15 2.01 7.24 -39.43 -0.29 1.72 16 17 F -0.12 -1.84 16.47 2.25 0.04 -1.80 16 18 C -0.17 -1.75 10.03 -39.51 -0.40 -2.15 16 19 C -0.07 -0.60 10.04 -39.61 -0.40 -1.00 16 20 C -0.17 -1.79 10.02 -39.51 -0.40 -2.18 16 21 C 0.14 1.89 6.26 -39.43 -0.25 1.64 16 22 F -0.13 -1.96 14.34 2.25 0.03 -1.93 16 23 C 0.05 1.24 6.17 -2.75 -0.02 1.22 16 24 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.38 10.36 7.18 45.56 0.33 10.69 16 26 H 0.07 1.72 7.86 -51.93 -0.41 1.32 16 27 H 0.07 1.64 8.01 -51.93 -0.42 1.22 16 28 H 0.04 0.94 5.87 -51.93 -0.30 0.63 16 29 H 0.06 1.16 7.72 -51.93 -0.40 0.76 16 30 H 0.05 0.86 7.31 -51.92 -0.38 0.48 16 31 H 0.09 1.40 7.63 -51.93 -0.40 1.00 16 32 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.04 0.84 7.39 -51.93 -0.38 0.46 16 36 H 0.08 1.84 7.39 -51.93 -0.38 1.46 16 LS Contribution 301.01 15.07 4.54 4.54 Total: -1.00 -29.06 301.01 -7.90 -36.96 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -3.53 Total: 9.36 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -2.85 Total: -11.32 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: -0.65 Total: -35.51 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.46 Total: -16.38 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.07 Total: -3.73 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.06 -7.90 -36.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150441.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.733 kcal (2) G-P(sol) polarization free energy of solvation -29.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds