Wall clock time and date at job start Tue Mar 31 2020 05:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00195 * 2 1 4 4 H 1.48498 * 109.47182 * 270.00230 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.00327 * 3 2 1 6 6 H 1.48501 * 109.47310 * 150.00235 * 3 2 1 7 7 C 1.37879 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99593 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00494 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.27297 * 59.29726 * 9 7 2 11 11 C 1.54596 * 110.31037 * 297.21578 * 9 7 2 12 12 C 1.55188 * 102.80434 * 219.04695 * 11 9 7 13 13 N 1.48537 * 103.23604 * 37.42997 * 12 11 9 14 14 C 1.46905 * 110.99725 * 200.25613 * 13 12 11 15 15 C 1.50693 * 109.47473 * 307.39863 * 14 13 12 16 16 C 1.38423 * 120.02545 * 269.72561 * 15 14 13 17 17 F 1.35104 * 120.00757 * 359.97438 * 16 15 14 18 18 C 1.38475 * 119.97432 * 179.69969 * 16 15 14 19 19 C 1.38204 * 120.02268 * 0.59670 * 18 16 15 20 20 C 1.38205 * 120.05202 * 359.67959 * 19 18 16 21 21 C 1.38423 * 120.02770 * 90.00284 * 15 14 13 22 22 F 1.35095 * 120.00991 * 359.97438 * 21 15 14 23 23 C 1.47904 * 105.82101 * 320.76937 * 13 12 11 24 24 H 0.96995 * 119.99733 * 0.02562 * 1 2 3 25 25 H 0.96700 * 114.00311 * 300.70718 * 10 9 7 26 26 H 1.09006 * 110.72287 * 337.38099 * 11 9 7 27 27 H 1.09001 * 110.72819 * 100.66392 * 11 9 7 28 28 H 1.09006 * 110.68590 * 278.98515 * 12 11 9 29 29 H 1.08997 * 110.78774 * 155.92766 * 12 11 9 30 30 H 1.09007 * 109.46854 * 67.39951 * 14 13 12 31 31 H 1.09006 * 109.46779 * 187.39426 * 14 13 12 32 32 H 1.08004 * 119.98421 * 180.32182 * 18 16 15 33 33 H 1.08004 * 119.97177 * 179.70193 * 19 18 16 34 34 H 1.08005 * 119.98644 * 180.02562 * 20 19 18 35 35 H 1.08997 * 109.91742 * 265.97719 * 23 13 12 36 36 H 1.08994 * 110.07733 * 144.77482 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4103 -2.5855 -1.1528 11 6 0.4090 -2.6327 1.2891 12 6 0.5665 -4.1341 1.6487 13 7 1.9781 -4.4239 1.2886 14 6 2.1883 -5.8657 1.1018 15 6 1.6870 -6.6077 2.3139 16 6 2.5412 -6.8611 3.3732 17 9 3.8251 -6.4438 3.3207 18 6 2.0777 -7.5376 4.4891 19 6 0.7662 -7.9704 4.5401 20 6 -0.0860 -7.7229 3.4806 21 6 0.3735 -7.0414 2.3663 22 9 -0.4599 -6.7992 1.3310 23 6 2.2341 -3.6840 0.0338 24 1 -0.4849 0.8400 -0.0004 25 1 -0.2441 -1.8765 -1.2163 26 1 0.8130 -2.0014 2.0806 27 1 -0.6354 -2.3886 1.0949 28 1 -0.1148 -4.7453 1.0568 29 1 0.4001 -4.2963 2.7137 30 1 1.6433 -6.2011 0.2194 31 1 3.2520 -6.0636 0.9689 32 1 2.7426 -7.7308 5.3179 33 1 0.4069 -8.5021 5.4088 34 1 -1.1109 -8.0613 3.5218 35 1 2.0612 -4.3350 -0.8231 36 1 3.2599 -3.3159 0.0192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150441.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:35 Heat of formation + Delta-G solvation = -125.627659 kcal Electronic energy + Delta-G solvation = -22785.776931 eV Core-core repulsion = 19098.022825 eV Total energy + Delta-G solvation = -3687.754106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.11000 -49.95360 -40.49571 -39.47835 -36.80439 -34.16964 -33.46743 -31.24687 -30.78568 -29.83772 -27.23166 -25.74115 -23.86580 -23.18491 -21.69575 -21.33101 -19.17012 -19.10370 -18.34535 -17.51310 -17.03381 -16.93791 -16.59660 -16.51401 -16.32876 -16.07555 -15.71752 -15.43276 -15.12821 -14.64775 -14.21949 -13.95203 -13.70001 -13.46300 -13.21326 -13.09610 -13.01391 -12.80214 -12.61194 -12.49007 -12.31274 -12.12872 -12.09287 -11.90428 -11.12815 -10.63100 -10.19863 -9.97154 -9.72648 -9.38280 -8.22831 -6.37039 -0.03425 0.00717 1.40321 1.41633 1.52054 2.35641 2.39049 2.92628 2.97134 3.12996 3.40089 3.44842 3.66321 3.84834 3.91390 4.13878 4.24431 4.26207 4.32125 4.47792 4.49847 4.57553 4.71264 4.83936 4.91049 5.02527 5.06610 5.09013 5.16459 5.21817 5.35402 5.54397 5.72822 5.80387 5.86743 6.03280 6.13716 6.67056 7.32348 7.40712 8.83615 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.026751 B = 0.004789 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.438464 B = 5844.820531 C = 6252.403740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.028 3.972 3 Si 0.962 3.038 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.556 4.556 8 H 0.054 0.946 9 C 0.229 3.771 10 O -0.601 6.601 11 C -0.108 4.108 12 C 0.041 3.959 13 N -0.510 5.510 14 C 0.086 3.914 15 C -0.169 4.169 16 C 0.126 3.874 17 F -0.138 7.138 18 C -0.158 4.158 19 C -0.047 4.047 20 C -0.159 4.159 21 C 0.110 3.890 22 F -0.143 7.143 23 C 0.061 3.939 24 H 0.270 0.730 25 H 0.378 0.622 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.092 0.908 32 H 0.170 0.830 33 H 0.188 0.812 34 H 0.167 0.833 35 H 0.036 0.964 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.173 -16.655 10.451 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.172 4.172 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.594 4.594 8 H 0.072 0.928 9 C 0.189 3.811 10 O -0.411 6.411 11 C -0.147 4.147 12 C -0.086 4.086 13 N -0.234 5.234 14 C -0.042 4.042 15 C -0.171 4.171 16 C 0.106 3.894 17 F -0.116 7.116 18 C -0.176 4.176 19 C -0.065 4.065 20 C -0.177 4.177 21 C 0.090 3.910 22 F -0.122 7.122 23 C -0.067 4.067 24 H 0.079 0.921 25 H 0.228 0.772 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.188 0.812 33 H 0.205 0.795 34 H 0.184 0.816 35 H 0.054 0.946 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.779 -16.885 10.687 19.998 hybrid contribution -0.391 1.603 -1.238 2.063 sum 0.388 -15.282 9.449 17.971 Atomic orbital electron populations 1.69742 1.06859 1.28212 1.50678 1.25712 0.95870 1.02336 0.93293 0.85499 0.78664 0.78871 0.78227 1.20108 1.20401 1.19647 1.21929 0.93426 0.92008 1.52015 0.92756 1.19579 0.86921 0.92142 0.82433 1.86086 1.52145 1.54606 1.48217 1.22786 0.99323 0.93427 0.99114 1.23298 0.88758 0.96731 0.99817 1.64944 1.22360 1.06269 1.29827 1.21057 1.01854 0.87521 0.93734 1.19809 0.94110 1.04713 0.98499 1.17490 0.78771 0.98023 0.95139 1.91502 1.35266 1.88324 1.96555 1.21597 0.98631 1.00036 0.97356 1.21347 0.90902 0.95892 0.98374 1.21560 1.03290 1.00704 0.92194 1.17620 0.86739 1.00004 0.86632 1.91478 1.70791 1.92459 1.57433 1.22732 0.99681 0.94606 0.89646 0.92100 0.77232 0.93401 0.93068 0.93755 0.90876 0.94035 0.88995 0.81242 0.79480 0.81582 0.94617 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.41 10.87 21.45 0.23 -50.17 16 2 C 0.03 1.52 5.26 84.66 0.45 1.97 16 3 Si 0.96 43.49 29.54 68.60 2.03 45.51 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.56 -31.28 8.11 25.60 0.21 -31.07 16 8 H 0.05 3.06 7.34 -2.91 -0.02 3.04 16 9 C 0.23 12.09 0.99 -10.66 -0.01 12.08 16 10 O -0.60 -33.20 12.92 -148.98 -1.93 -35.13 16 11 C -0.11 -5.36 5.42 31.89 0.17 -5.18 16 12 C 0.04 1.74 4.97 86.74 0.43 2.18 16 13 N -0.51 -21.24 5.39 -887.02 -4.78 -26.02 16 14 C 0.09 2.99 4.86 85.55 0.42 3.40 16 15 C -0.17 -4.97 4.60 -19.78 -0.09 -5.07 16 16 C 0.13 3.23 7.24 22.37 0.16 3.39 16 17 F -0.14 -4.00 16.47 44.97 0.74 -3.25 16 18 C -0.16 -2.66 10.03 22.32 0.22 -2.44 16 19 C -0.05 -0.61 10.04 22.25 0.22 -0.39 16 20 C -0.16 -2.82 10.02 22.32 0.22 -2.59 16 21 C 0.11 2.92 6.26 22.37 0.14 3.06 16 22 F -0.14 -4.46 14.34 44.97 0.64 -3.81 16 23 C 0.06 2.86 6.17 86.44 0.53 3.39 16 24 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 25 H 0.38 21.13 7.18 -74.06 -0.53 20.60 16 26 H 0.05 2.52 7.86 -2.38 -0.02 2.50 16 27 H 0.05 2.64 8.01 -2.39 -0.02 2.62 16 28 H 0.04 1.88 5.87 -2.38 -0.01 1.86 16 29 H 0.07 2.86 7.72 -2.39 -0.02 2.84 16 30 H 0.04 1.49 7.31 -2.38 -0.02 1.47 16 31 H 0.09 3.03 7.63 -2.38 -0.02 3.01 16 32 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 34 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 35 H 0.04 1.65 7.39 -2.39 -0.02 1.63 16 36 H 0.08 3.60 7.39 -2.39 -0.02 3.58 16 Total: -1.00 -64.16 301.01 0.60 -63.56 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.59 Total: 26.59 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 3.08 Total: -17.28 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -4.55 Total: -76.19 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -1.93 Total: -35.13 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 1.39 Total: -7.07 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -64.16 0.60 -63.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150441.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.072 kcal (2) G-P(sol) polarization free energy of solvation -64.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds