Wall clock time and date at job start Tue Mar 31 2020 05:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42898 * 110.27034 * 300.41995 * 9 7 2 11 11 C 1.54592 * 110.30890 * 62.50972 * 9 7 2 12 12 C 1.55196 * 102.80300 * 96.98090 * 11 9 7 13 13 N 1.48533 * 103.23367 * 37.43310 * 12 11 9 14 14 C 1.46904 * 110.99848 * 200.25751 * 13 12 11 15 15 C 1.50700 * 109.47186 * 287.39639 * 14 13 12 16 16 C 1.38207 * 119.97391 * 269.73086 * 15 14 13 17 17 C 1.38475 * 120.02332 * 179.72755 * 16 15 14 18 18 F 1.35103 * 120.01475 * 180.25225 * 17 16 15 19 19 C 1.38423 * 119.97436 * 0.53962 * 17 16 15 20 20 C 1.38418 * 119.95034 * 359.73021 * 19 17 16 21 21 F 1.35100 * 120.01423 * 180.02562 * 20 19 17 22 22 C 1.38208 * 119.97399 * 89.99459 * 15 14 13 23 23 C 1.47899 * 105.82058 * 320.76900 * 13 12 11 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 0.96704 * 114.00075 * 59.30102 * 10 9 7 26 26 H 1.09002 * 110.72407 * 215.31938 * 11 9 7 27 27 H 1.09000 * 110.72935 * 338.59896 * 11 9 7 28 28 H 1.09001 * 110.68056 * 278.98632 * 12 11 9 29 29 H 1.09004 * 110.78754 * 155.92756 * 12 11 9 30 30 H 1.09000 * 109.46968 * 47.39733 * 14 13 12 31 31 H 1.09002 * 109.47219 * 167.39469 * 14 13 12 32 32 H 1.08002 * 119.99116 * 359.97100 * 16 15 14 33 33 H 1.08000 * 120.02495 * 179.70943 * 19 17 16 34 34 H 1.07993 * 119.98946 * 0.03140 * 22 15 14 35 35 H 1.09002 * 109.91880 * 265.97874 * 23 13 12 36 36 H 1.09002 * 110.08119 * 144.77515 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4106 -2.5909 1.1468 11 6 0.4086 -2.6266 -1.2954 12 6 1.3172 -3.4841 -2.2161 13 7 1.9390 -4.4508 -1.2753 14 6 3.1656 -5.0247 -1.8447 15 6 2.8050 -5.9922 -2.9424 16 6 2.5999 -7.3266 -2.6467 17 6 2.2629 -8.2155 -3.6537 18 9 2.0574 -9.5190 -3.3637 19 6 2.1426 -7.7692 -4.9585 20 6 2.3538 -6.4336 -5.2542 21 9 2.2362 -5.9965 -6.5271 22 6 2.6851 -5.5455 -4.2447 23 6 2.2340 -3.6838 -0.0456 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2438 -1.8821 1.2137 26 1 -0.5313 -3.1402 -1.0932 27 1 0.2266 -1.6462 -1.7357 28 1 2.0785 -2.8648 -2.6904 29 1 0.7243 -4.0057 -2.9675 30 1 3.7848 -4.2261 -2.2532 31 1 3.7174 -5.5494 -1.0646 32 1 2.6985 -7.6756 -1.6294 33 1 1.8845 -8.4627 -5.7452 34 1 2.8503 -4.5034 -4.4753 35 1 3.2592 -3.3147 -0.0750 36 1 2.0916 -4.3144 0.8320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152722.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:54 Heat of formation + Delta-G solvation = -127.343205 kcal Electronic energy + Delta-G solvation = -22087.333901 eV Core-core repulsion = 18399.505403 eV Total energy + Delta-G solvation = -3687.828498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.03018 -50.00258 -40.62148 -39.43938 -36.66193 -34.17248 -33.34826 -31.35595 -30.75499 -29.60540 -27.32580 -25.77849 -23.89123 -22.97107 -21.81725 -21.23411 -19.15254 -18.66276 -18.18217 -17.38378 -17.23717 -17.01239 -16.82633 -16.67263 -16.32211 -15.97966 -15.63641 -15.29689 -15.06105 -14.62514 -14.35862 -14.13815 -13.68990 -13.34177 -13.11082 -12.97458 -12.91801 -12.80925 -12.60949 -12.35283 -12.31768 -12.10319 -12.08248 -11.82375 -11.07885 -10.60317 -10.13948 -9.97602 -9.76275 -9.31763 -8.20718 -6.38307 -0.06242 -0.03551 1.41582 1.43447 1.50323 2.27145 2.38493 2.79744 3.02889 3.23088 3.33745 3.51952 3.80660 3.93093 4.04336 4.11433 4.15875 4.19143 4.44496 4.53065 4.58841 4.75157 4.76865 4.77391 4.96818 4.97795 5.00743 5.16383 5.25678 5.34547 5.42902 5.59330 5.73686 5.76667 5.84305 6.15185 6.25443 6.69105 7.33706 7.47671 8.83276 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.025964 B = 0.004110 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.136755 B = 6810.826528 C = 7337.383066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.030 3.970 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.557 4.557 8 H 0.055 0.945 9 C 0.228 3.772 10 O -0.601 6.601 11 C -0.124 4.124 12 C 0.051 3.949 13 N -0.513 5.513 14 C 0.079 3.921 15 C -0.014 4.014 16 C -0.142 4.142 17 C 0.122 3.878 18 F -0.135 7.135 19 C -0.190 4.190 20 C 0.121 3.879 21 F -0.136 7.136 22 C -0.157 4.157 23 C 0.061 3.939 24 H 0.269 0.731 25 H 0.375 0.625 26 H 0.037 0.963 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.154 0.846 33 H 0.164 0.836 34 H 0.144 0.856 35 H 0.050 0.950 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.803 -12.197 -9.083 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.170 4.170 3 Si 0.782 3.218 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.595 4.595 8 H 0.074 0.926 9 C 0.188 3.812 10 O -0.409 6.409 11 C -0.162 4.162 12 C -0.076 4.076 13 N -0.237 5.237 14 C -0.048 4.048 15 C -0.015 4.015 16 C -0.161 4.161 17 C 0.102 3.898 18 F -0.113 7.113 19 C -0.209 4.209 20 C 0.102 3.898 21 F -0.115 7.115 22 C -0.177 4.177 23 C -0.067 4.067 24 H 0.079 0.921 25 H 0.225 0.775 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.171 0.829 33 H 0.182 0.818 34 H 0.162 0.838 35 H 0.068 0.932 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.667 -13.084 -8.889 16.802 hybrid contribution 0.254 2.097 -0.370 2.145 sum 5.920 -10.987 -9.259 15.540 Atomic orbital electron populations 1.69745 1.06885 1.28236 1.50214 1.25677 0.95739 1.02206 0.93413 0.85634 0.78472 0.78939 0.78706 1.19620 1.20779 1.20026 1.21960 0.93350 0.92007 1.52218 0.92636 1.19661 0.87180 0.91810 0.82516 1.86102 1.52086 1.54268 1.48444 1.22893 0.97042 0.98222 0.98081 1.23115 0.97137 0.92550 0.94821 1.64772 1.23881 1.30804 1.04263 1.21323 0.91552 0.96366 0.95575 1.19339 0.95578 0.93387 0.93198 1.21226 1.02064 0.92549 1.00284 1.17275 1.00895 0.78499 0.93100 1.91523 1.92434 1.33301 1.94080 1.21134 1.06951 0.95677 0.97185 1.17253 1.01313 0.92224 0.79050 1.91519 1.93519 1.90039 1.36424 1.21264 1.03456 1.00931 0.92033 1.22634 0.97457 0.93893 0.92705 0.92121 0.77515 0.94412 0.92294 0.93766 0.90264 0.92455 0.87896 0.82854 0.81816 0.83774 0.93150 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.07 10.38 21.45 0.22 -47.85 16 2 C 0.03 1.55 5.01 84.66 0.42 1.98 16 3 Si 0.96 41.06 29.54 68.60 2.03 43.09 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.56 -28.96 8.23 25.60 0.21 -28.75 16 8 H 0.06 2.84 7.34 -2.91 -0.02 2.82 16 9 C 0.23 11.12 0.99 -10.66 -0.01 11.11 16 10 O -0.60 -31.73 12.93 -148.98 -1.93 -33.66 16 11 C -0.12 -5.67 5.89 31.89 0.19 -5.48 16 12 C 0.05 1.89 5.68 86.74 0.49 2.38 16 13 N -0.51 -17.83 5.23 -887.02 -4.64 -22.47 16 14 C 0.08 2.09 4.86 85.56 0.42 2.51 16 15 C -0.01 -0.34 5.16 -19.88 -0.10 -0.44 16 16 C -0.14 -3.13 9.68 22.32 0.22 -2.91 16 17 C 0.12 2.62 7.30 22.37 0.16 2.78 16 18 F -0.13 -2.96 17.27 44.97 0.78 -2.18 16 19 C -0.19 -3.83 10.01 22.36 0.22 -3.60 16 20 C 0.12 2.69 7.30 22.37 0.16 2.85 16 21 F -0.14 -3.15 17.27 44.97 0.78 -2.38 16 22 C -0.16 -3.63 8.80 22.32 0.20 -3.44 16 23 C 0.06 2.48 6.13 86.44 0.53 3.01 16 24 H 0.27 13.60 8.31 -92.70 -0.77 12.83 16 25 H 0.38 20.30 7.20 -74.05 -0.53 19.77 16 26 H 0.04 1.77 8.08 -2.39 -0.02 1.75 16 27 H 0.06 2.96 6.63 -2.39 -0.02 2.95 16 28 H 0.04 1.60 7.81 -2.39 -0.02 1.58 16 29 H 0.08 2.66 7.84 -2.38 -0.02 2.65 16 30 H 0.06 1.48 7.77 -2.39 -0.02 1.46 16 31 H 0.10 2.37 8.02 -2.39 -0.02 2.35 16 32 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 33 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 34 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 35 H 0.05 1.99 7.02 -2.39 -0.02 1.97 16 36 H 0.07 2.82 7.96 -2.39 -0.02 2.80 16 Total: -1.00 -55.55 307.14 0.92 -54.63 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.58 Total: 28.81 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 3.11 Total: -18.00 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: -4.42 Total: -70.32 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.93 Total: -33.66 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 1.55 Total: -4.56 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -55.55 0.92 -54.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152722.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.713 kcal (2) G-P(sol) polarization free energy of solvation -55.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds