Wall clock time and date at job start Tue Mar 31 2020 05:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38311 * 119.80954 * 2 1 4 4 C 1.38223 * 120.19232 * 180.02562 * 3 2 1 5 5 F 1.35095 * 120.09753 * 180.02562 * 4 3 2 6 6 C 1.39905 * 119.80072 * 359.97438 * 4 3 2 7 7 C 1.47542 * 120.18139 * 180.02562 * 6 4 3 8 8 O 1.21588 * 120.00215 * 89.99762 * 7 6 4 9 9 N 1.34784 * 119.99927 * 269.99722 * 7 6 4 10 10 C 1.46493 * 119.99864 * 179.72967 * 9 7 6 11 11 C 1.53001 * 109.47084 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47182 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46808 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00289 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00080 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00485 * 180.02562 * 15 13 12 17 17 Si 1.86808 * 119.99592 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.46875 * 89.99986 * 17 15 13 19 19 H 1.48497 * 109.46872 * 210.00051 * 17 15 13 20 20 H 1.48494 * 109.47249 * 329.99828 * 17 15 13 21 21 C 1.39896 * 119.62459 * 0.27110 * 6 4 3 22 22 F 1.35102 * 120.09238 * 179.70739 * 21 6 4 23 23 C 1.38222 * 119.81018 * 359.49519 * 21 6 4 24 24 H 1.09006 * 109.46907 * 89.99855 * 1 2 3 25 25 H 1.08997 * 109.47297 * 210.00110 * 1 2 3 26 26 H 1.09003 * 109.47311 * 330.00823 * 1 2 3 27 27 H 1.08003 * 119.90044 * 359.97438 * 3 2 1 28 28 H 0.97000 * 119.99339 * 0.02562 * 9 7 6 29 29 H 1.09007 * 109.47196 * 299.99538 * 10 9 7 30 30 H 1.09006 * 109.47678 * 59.99732 * 10 9 7 31 31 H 1.09007 * 109.46593 * 299.99743 * 11 10 9 32 32 H 1.08993 * 109.47372 * 59.99485 * 11 10 9 33 33 H 1.08993 * 109.47057 * 299.99535 * 12 11 10 34 34 H 1.09001 * 109.47095 * 59.99863 * 12 11 10 35 35 H 0.96993 * 120.00178 * 180.02562 * 16 15 13 36 36 H 1.08000 * 119.90324 * 180.23130 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2001 0.0000 4 6 3.5767 1.2093 -0.0005 5 9 4.2464 2.3826 0.0000 6 6 4.2801 0.0000 -0.0005 7 6 5.7556 0.0000 -0.0005 8 8 6.3635 0.0001 1.0524 9 7 6.4295 0.0000 -1.1678 10 6 7.8944 0.0060 -1.1678 11 6 8.4044 0.0053 -2.6103 12 6 9.9344 0.0123 -2.6103 13 6 10.4367 0.0109 -4.0312 14 1 9.7349 0.0060 -4.8520 15 6 11.7922 0.0170 -4.2832 16 7 12.2306 0.0163 -5.5231 17 14 13.0061 0.0261 -2.8633 18 1 13.3346 -1.3715 -2.4840 19 1 14.2459 0.7313 -3.2767 20 1 12.4029 0.7258 -1.7008 21 6 3.5766 -1.2092 -0.0057 22 9 4.2463 -2.3826 -0.0118 23 6 2.1944 -1.2000 -0.0003 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8901 0.5137 27 1 1.6498 2.1327 -0.0004 28 1 5.9444 0.0003 -2.0078 29 1 8.2541 0.8988 -0.6561 30 1 8.2615 -0.8812 -0.6518 31 1 8.0447 -0.8873 -3.1223 32 1 8.0374 0.8926 -3.1259 33 1 10.2937 0.9049 -2.0985 34 1 10.3018 -0.8750 -2.0946 35 1 13.1842 0.0202 -5.7004 36 1 1.6498 -2.1327 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597149526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:36 Heat of formation + Delta-G solvation = -119.806067 kcal Electronic energy + Delta-G solvation = -21199.331361 eV Core-core repulsion = 17511.829698 eV Total energy + Delta-G solvation = -3687.501663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.38638 -49.36472 -40.06499 -38.84615 -35.59449 -33.53654 -33.07610 -31.41859 -30.87299 -28.54657 -26.90658 -23.55463 -23.38520 -22.38438 -20.92995 -20.23217 -18.23525 -17.84262 -17.69888 -16.81689 -16.49286 -16.14586 -15.77222 -15.65261 -15.34786 -15.22281 -14.53028 -14.17578 -14.07133 -13.83877 -13.66454 -13.62167 -12.72079 -12.47912 -12.37232 -12.29369 -12.02377 -11.95699 -11.89537 -11.10687 -10.90118 -10.38356 -10.02385 -9.82333 -9.66647 -9.30265 -9.24311 -9.23065 -8.97884 -8.55555 -6.06336 -4.05140 0.31523 0.50624 2.39311 2.74527 3.10199 3.31758 3.35106 3.39264 3.43724 3.85175 4.05412 4.37392 4.44561 4.45341 4.57347 4.85515 5.03868 5.05818 5.27735 5.30073 5.30360 5.48152 5.51891 5.53356 5.62663 5.77338 5.98210 6.22776 6.25053 6.42156 6.62592 6.76257 7.21873 7.35448 7.45115 7.75737 8.09714 8.50153 8.97404 9.55860 11.06907 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.030705 B = 0.003098 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.670720 B = 9036.922334 C = 9134.476482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.014 4.014 3 C -0.168 4.168 4 C 0.169 3.831 5 F -0.119 7.119 6 C -0.203 4.203 7 C 0.561 3.439 8 O -0.524 6.524 9 N -0.710 5.710 10 C 0.112 3.888 11 C -0.113 4.113 12 C -0.011 4.011 13 C -0.522 4.522 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.903 5.903 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.264 1.264 21 C 0.169 3.831 22 F -0.119 7.119 23 C -0.168 4.168 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.149 0.851 28 H 0.402 0.598 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.019 0.981 34 H 0.015 0.985 35 H 0.263 0.737 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.660 -0.006 11.212 28.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.015 4.015 3 C -0.187 4.187 4 C 0.149 3.851 5 F -0.097 7.097 6 C -0.208 4.208 7 C 0.344 3.656 8 O -0.400 6.400 9 N -0.360 5.360 10 C -0.010 4.010 11 C -0.151 4.151 12 C -0.049 4.049 13 C -0.560 4.560 14 H 0.090 0.910 15 C -0.134 4.134 16 N -0.542 5.542 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.189 1.189 21 C 0.149 3.851 22 F -0.097 7.097 23 C -0.187 4.187 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.167 0.833 28 H 0.237 0.763 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -25.953 -0.004 11.857 28.533 hybrid contribution 0.872 -0.015 0.187 0.892 sum -25.081 -0.019 12.043 27.822 Atomic orbital electron populations 1.20904 0.89211 1.03905 1.03481 1.19682 0.96961 0.91074 0.93766 1.21030 0.91454 1.00031 1.06197 1.17260 0.89639 0.79899 0.98314 1.91595 1.80606 1.44465 1.93052 1.20005 0.95408 0.92662 1.12730 1.17744 0.85666 0.77405 0.84793 1.90829 1.69003 1.48972 1.31179 1.46154 1.08754 1.73314 1.07768 1.21771 0.76853 1.02310 1.00058 1.21719 0.99352 1.01895 0.92155 1.19505 0.90375 0.96730 0.98275 1.21088 0.92632 1.51129 0.91165 0.90989 1.25025 0.98469 0.94443 0.95512 1.69906 1.14498 1.50991 1.18798 0.86777 0.80700 0.78606 0.83241 1.20223 1.21351 1.18876 1.17261 0.89640 0.79902 0.98315 1.91597 1.80603 1.44467 1.93054 1.21027 0.91456 1.00031 1.06195 0.89852 0.90507 0.90510 0.83315 0.76348 0.91386 0.91356 0.91977 0.91962 0.96240 0.96677 0.92680 0.83316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.37 10.00 36.00 0.36 -0.01 16 2 C -0.01 -0.09 5.88 -104.57 -0.62 -0.71 16 3 C -0.17 -1.28 9.65 -39.56 -0.38 -1.66 16 4 C 0.17 1.87 7.29 -38.96 -0.28 1.58 16 5 F -0.12 -1.51 16.83 2.25 0.04 -1.47 16 6 C -0.20 -2.59 5.64 -104.86 -0.59 -3.18 16 7 C 0.56 9.07 6.54 -12.46 -0.08 8.99 16 8 O -0.52 -10.45 17.11 5.29 0.09 -10.36 16 9 N -0.71 -10.71 5.55 -61.34 -0.34 -11.05 16 10 C 0.11 1.94 5.67 -4.04 -0.02 1.92 16 11 C -0.11 -2.15 5.27 -26.73 -0.14 -2.30 16 12 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 13 C -0.52 -14.82 9.66 -34.44 -0.33 -15.16 16 14 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 17 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 21 C 0.17 1.86 7.29 -38.97 -0.28 1.58 16 22 F -0.12 -1.51 16.83 2.25 0.04 -1.47 16 23 C -0.17 -1.27 9.65 -39.56 -0.38 -1.66 16 24 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.08 0.17 8.08 -51.93 -0.42 -0.25 16 26 H 0.08 0.17 8.08 -51.93 -0.42 -0.25 16 27 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 28 H 0.40 5.03 8.46 -40.82 -0.35 4.68 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 34 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 323.08 15.07 4.87 4.87 Total: -1.00 -34.09 323.08 -6.66 -40.75 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -4.50 Total: -2.28 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -2.97 Total: -9.10 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.43 Total: -38.19 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.09 -6.66 -40.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.055 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds