Wall clock time and date at job start Tue Mar 31 2020 05:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38311 * 119.80954 * 2 1 4 4 C 1.38223 * 120.19232 * 180.02562 * 3 2 1 5 5 F 1.35095 * 120.09753 * 180.02562 * 4 3 2 6 6 C 1.39905 * 119.80072 * 359.97438 * 4 3 2 7 7 C 1.47542 * 120.18139 * 180.02562 * 6 4 3 8 8 O 1.21588 * 120.00215 * 89.99762 * 7 6 4 9 9 N 1.34784 * 119.99927 * 269.99722 * 7 6 4 10 10 C 1.46493 * 119.99864 * 179.72967 * 9 7 6 11 11 C 1.53001 * 109.47084 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47182 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46808 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00289 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00080 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00485 * 180.02562 * 15 13 12 17 17 Si 1.86808 * 119.99592 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.46875 * 89.99986 * 17 15 13 19 19 H 1.48497 * 109.46872 * 210.00051 * 17 15 13 20 20 H 1.48494 * 109.47249 * 329.99828 * 17 15 13 21 21 C 1.39896 * 119.62459 * 0.27110 * 6 4 3 22 22 F 1.35102 * 120.09238 * 179.70739 * 21 6 4 23 23 C 1.38222 * 119.81018 * 359.49519 * 21 6 4 24 24 H 1.09006 * 109.46907 * 89.99855 * 1 2 3 25 25 H 1.08997 * 109.47297 * 210.00110 * 1 2 3 26 26 H 1.09003 * 109.47311 * 330.00823 * 1 2 3 27 27 H 1.08003 * 119.90044 * 359.97438 * 3 2 1 28 28 H 0.97000 * 119.99339 * 0.02562 * 9 7 6 29 29 H 1.09007 * 109.47196 * 299.99538 * 10 9 7 30 30 H 1.09006 * 109.47678 * 59.99732 * 10 9 7 31 31 H 1.09007 * 109.46593 * 299.99743 * 11 10 9 32 32 H 1.08993 * 109.47372 * 59.99485 * 11 10 9 33 33 H 1.08993 * 109.47057 * 299.99535 * 12 11 10 34 34 H 1.09001 * 109.47095 * 59.99863 * 12 11 10 35 35 H 0.96993 * 120.00178 * 180.02562 * 16 15 13 36 36 H 1.08000 * 119.90324 * 180.23130 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2001 0.0000 4 6 3.5767 1.2093 -0.0005 5 9 4.2464 2.3826 0.0000 6 6 4.2801 0.0000 -0.0005 7 6 5.7556 0.0000 -0.0005 8 8 6.3635 0.0001 1.0524 9 7 6.4295 0.0000 -1.1678 10 6 7.8944 0.0060 -1.1678 11 6 8.4044 0.0053 -2.6103 12 6 9.9344 0.0123 -2.6103 13 6 10.4367 0.0109 -4.0312 14 1 9.7349 0.0060 -4.8520 15 6 11.7922 0.0170 -4.2832 16 7 12.2306 0.0163 -5.5231 17 14 13.0061 0.0261 -2.8633 18 1 13.3346 -1.3715 -2.4840 19 1 14.2459 0.7313 -3.2767 20 1 12.4029 0.7258 -1.7008 21 6 3.5766 -1.2092 -0.0057 22 9 4.2463 -2.3826 -0.0118 23 6 2.1944 -1.2000 -0.0003 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8901 0.5137 27 1 1.6498 2.1327 -0.0004 28 1 5.9444 0.0003 -2.0078 29 1 8.2541 0.8988 -0.6561 30 1 8.2615 -0.8812 -0.6518 31 1 8.0447 -0.8873 -3.1223 32 1 8.0374 0.8926 -3.1259 33 1 10.2937 0.9049 -2.0985 34 1 10.3018 -0.8750 -2.0946 35 1 13.1842 0.0202 -5.7004 36 1 1.6498 -2.1327 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597149526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:36 Heat of formation + Delta-G solvation = -142.229834 kcal Electronic energy + Delta-G solvation = -21200.303728 eV Core-core repulsion = 17511.829698 eV Total energy + Delta-G solvation = -3688.474030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.25550 -50.23205 -41.15710 -39.71598 -37.13682 -35.25512 -34.06744 -33.16297 -31.55278 -29.62566 -28.23569 -24.99720 -24.10707 -23.46602 -22.37041 -21.66745 -19.34687 -18.89915 -18.64580 -18.50342 -17.60487 -16.95926 -16.91974 -16.64041 -16.53627 -16.37275 -16.07087 -15.40398 -15.30724 -14.81343 -14.70723 -14.38067 -14.21193 -13.87646 -13.72632 -13.01064 -13.00194 -12.80739 -12.76180 -12.74649 -12.57819 -12.02418 -11.83359 -11.65440 -11.38284 -11.26458 -10.78334 -10.33623 -10.00691 -9.95045 -8.31425 -6.35579 -0.41946 -0.18077 1.16755 1.35451 1.36997 1.48929 1.88621 2.14920 2.34611 2.57251 3.04191 3.16758 3.32111 3.58243 3.67425 3.98579 4.01289 4.10751 4.41428 4.47419 4.52969 4.58000 4.66576 4.79137 4.80259 4.90506 4.91414 4.98012 5.17924 5.26697 5.28905 5.40899 5.50244 5.61709 5.61924 6.22981 6.24856 6.72037 6.87443 7.29240 8.85036 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.030705 B = 0.003098 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.670720 B = 9036.922334 C = 9134.476482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.002 3.998 3 C -0.155 4.155 4 C 0.150 3.850 5 F -0.136 7.136 6 C -0.229 4.229 7 C 0.559 3.441 8 O -0.571 6.571 9 N -0.702 5.702 10 C 0.124 3.876 11 C -0.099 4.099 12 C -0.011 4.011 13 C -0.532 4.532 14 H 0.038 0.962 15 C 0.006 3.994 16 N -0.950 5.950 17 Si 0.947 3.053 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.249 1.249 21 C 0.150 3.850 22 F -0.135 7.135 23 C -0.155 4.155 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.178 0.822 28 H 0.415 0.585 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.021 0.979 35 H 0.267 0.733 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.369 -0.021 12.544 31.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.001 3.999 3 C -0.173 4.173 4 C 0.129 3.871 5 F -0.114 7.114 6 C -0.234 4.234 7 C 0.345 3.655 8 O -0.450 6.450 9 N -0.353 5.353 10 C 0.000 4.000 11 C -0.137 4.137 12 C -0.049 4.049 13 C -0.570 4.570 14 H 0.056 0.944 15 C -0.191 4.191 16 N -0.590 5.590 17 Si 0.771 3.229 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.172 1.172 21 C 0.130 3.870 22 F -0.114 7.114 23 C -0.173 4.173 24 H 0.117 0.883 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.196 0.804 28 H 0.252 0.748 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -28.702 -0.019 13.168 31.578 hybrid contribution 1.554 -0.012 -0.309 1.584 sum -27.148 -0.031 12.859 30.039 Atomic orbital electron populations 1.21048 0.86109 1.05423 1.04835 1.20154 0.98840 0.89920 0.90946 1.21407 0.89836 1.01941 1.04136 1.17549 0.90879 0.78773 0.99853 1.91549 1.81220 1.45200 1.93420 1.19828 0.93138 0.94348 1.16120 1.18290 0.87320 0.75906 0.83991 1.90785 1.70480 1.51093 1.32650 1.46031 1.07926 1.72811 1.08505 1.21458 0.78270 1.01834 0.98409 1.21489 0.96473 1.02329 0.93448 1.19461 0.93338 0.96926 0.95215 1.21437 0.92396 1.50429 0.92699 0.94387 1.25973 1.00714 0.94144 0.98294 1.70049 1.15162 1.52582 1.21227 0.85700 0.78027 0.79222 0.79990 1.19191 1.20882 1.17225 1.17549 0.90877 0.78776 0.99844 1.91551 1.81215 1.45197 1.93419 1.21404 0.89839 1.01940 1.04135 0.88291 0.89056 0.89061 0.80439 0.74840 0.91962 0.91865 0.91567 0.91587 0.95981 0.96093 0.92434 0.80438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.14 10.00 71.23 0.71 0.57 16 2 C 0.00 0.02 5.88 -19.83 -0.12 -0.10 16 3 C -0.15 -1.89 9.65 22.28 0.22 -1.68 16 4 C 0.15 3.17 7.29 22.67 0.17 3.34 16 5 F -0.14 -3.43 16.83 44.97 0.76 -2.67 16 6 C -0.23 -5.84 5.64 -20.02 -0.11 -5.95 16 7 C 0.56 18.55 6.54 86.70 0.57 19.11 16 8 O -0.57 -23.57 17.11 -3.99 -0.07 -23.64 16 9 N -0.70 -21.40 5.55 -466.25 -2.59 -23.99 16 10 C 0.12 4.27 5.67 86.38 0.49 4.76 16 11 C -0.10 -3.77 5.27 30.60 0.16 -3.61 16 12 C -0.01 -0.54 4.04 29.85 0.12 -0.41 16 13 C -0.53 -30.68 9.66 25.60 0.25 -30.43 16 14 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 15 C 0.01 0.34 5.47 84.66 0.46 0.80 16 16 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 17 Si 0.95 45.04 27.47 68.60 1.88 46.92 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 21 C 0.15 3.17 7.29 22.67 0.17 3.34 16 22 F -0.14 -3.42 16.83 44.97 0.76 -2.67 16 23 C -0.15 -1.89 9.65 22.28 0.22 -1.68 16 24 H 0.10 -0.06 8.14 -2.38 -0.02 -0.08 16 25 H 0.09 -0.07 8.08 -2.39 -0.02 -0.09 16 26 H 0.09 -0.07 8.08 -2.39 -0.02 -0.09 16 27 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16 28 H 0.41 10.36 8.46 -92.71 -0.78 9.58 16 29 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 30 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.07 2.44 8.14 -2.38 -0.02 2.43 16 32 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 34 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 35 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 36 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -76.61 323.08 4.60 -72.01 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 0.27 Total: 5.58 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 3.29 Total: -11.95 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -2.29 Total: -83.59 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.07 Total: -23.64 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 1.51 Total: -5.34 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal Total: -76.61 4.60 -72.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.220 kcal (2) G-P(sol) polarization free energy of solvation -76.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds