Wall clock time and date at job start Tue Mar 31 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99763 * 2 1 4 4 H 1.48503 * 109.47194 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47716 * 300.00405 * 3 2 1 6 6 H 1.48508 * 109.47056 * 60.00514 * 3 2 1 7 7 C 1.37877 * 120.00347 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99920 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99732 * 359.97438 * 7 2 1 10 10 C 1.53515 * 114.17038 * 180.02562 * 9 7 2 11 11 N 1.47478 * 87.93232 * 220.14007 * 10 9 7 12 12 C 1.46895 * 111.00045 * 138.70367 * 11 10 9 13 13 C 1.50707 * 109.47211 * 169.99871 * 12 11 10 14 14 C 1.38163 * 120.02715 * 259.97984 * 13 12 11 15 15 C 1.38243 * 120.05438 * 180.02562 * 14 13 12 16 16 C 1.38289 * 120.11362 * 359.97438 * 15 14 13 17 17 C 1.38125 * 120.05159 * 0.02562 * 16 15 14 18 18 C 1.38708 * 120.02785 * 79.99890 * 13 12 11 19 19 O 1.35899 * 120.05461 * 359.95420 * 18 13 12 20 20 C 1.42903 * 116.99930 * 180.02562 * 19 18 13 21 21 F 1.39895 * 109.47392 * 300.00490 * 20 19 18 22 22 F 1.39899 * 109.46826 * 60.00682 * 20 19 18 23 23 C 1.47482 * 87.83516 * 27.00910 * 11 10 9 24 24 H 0.96998 * 120.00531 * 359.97438 * 1 2 3 25 25 H 1.08997 * 113.25772 * 312.95175 * 9 7 2 26 26 H 1.09001 * 113.47606 * 105.36932 * 10 9 7 27 27 H 1.09004 * 113.52907 * 334.91614 * 10 9 7 28 28 H 1.08996 * 109.47583 * 49.99617 * 12 11 10 29 29 H 1.09004 * 109.47059 * 289.99714 * 12 11 10 30 30 H 1.08001 * 119.97059 * 359.97438 * 14 13 12 31 31 H 1.08004 * 119.94070 * 180.02562 * 15 14 13 32 32 H 1.07993 * 119.96940 * 180.28495 * 16 15 14 33 33 H 1.08000 * 120.02364 * 180.02562 * 17 16 15 34 34 H 1.08998 * 109.46876 * 179.97438 * 20 19 18 35 35 H 1.08995 * 113.47844 * 87.76243 * 23 11 10 36 36 H 1.09003 * 113.47089 * 218.22626 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.1497 -3.7437 -0.0005 11 7 1.2051 -4.3601 -0.9506 12 6 1.9207 -5.0901 -2.0056 13 6 0.9384 -5.9038 -2.8083 14 6 0.7972 -7.2560 -2.5627 15 6 -0.1033 -8.0031 -3.2990 16 6 -0.8651 -7.3993 -4.2826 17 6 -0.7275 -6.0478 -4.5320 18 6 0.1758 -5.2958 -3.7946 19 8 0.3125 -3.9658 -4.0377 20 6 -0.5056 -3.4071 -5.0676 21 9 -0.2249 -4.0420 -6.2822 22 9 -1.8539 -3.5934 -4.7446 23 6 0.8518 -2.9992 -1.3959 24 1 -0.4851 0.8400 0.0004 25 1 0.4452 -2.5308 0.7327 26 1 2.1891 -4.2509 0.9635 27 1 3.1383 -3.5667 -0.4242 28 1 2.6576 -5.7533 -1.5529 29 1 2.4251 -4.3798 -2.6608 30 1 1.3913 -7.7300 -1.7953 31 1 -0.2125 -9.0600 -3.1052 32 1 -1.5711 -7.9842 -4.8533 33 1 -1.3230 -5.5766 -5.3000 34 1 -0.2980 -2.3409 -5.1581 35 1 1.4936 -2.6226 -2.1923 36 1 -0.2089 -2.8756 -1.6144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597191866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:47 Heat of formation + Delta-G solvation = -83.005325 kcal Electronic energy + Delta-G solvation = -22645.823548 eV Core-core repulsion = 18959.917686 eV Total energy + Delta-G solvation = -3685.905863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.29255 -47.27284 -40.12348 -38.57924 -37.27078 -33.06505 -31.97206 -30.19766 -28.45458 -26.10739 -25.47623 -24.70176 -22.91016 -22.32164 -20.93632 -18.79634 -18.59360 -17.93830 -17.84446 -16.63388 -16.00919 -15.83464 -15.05358 -14.83887 -14.52638 -14.29138 -14.00052 -13.82674 -13.69681 -13.55511 -13.47683 -13.04853 -12.67453 -12.39158 -12.05902 -11.74619 -11.63829 -11.38021 -11.21909 -10.99479 -10.78936 -10.53707 -10.21775 -9.71585 -9.31989 -8.90314 -8.71089 -8.43446 -8.19136 -7.92318 -6.04166 -4.08407 1.41341 1.45774 2.71015 3.27061 3.35699 3.39289 3.52724 3.79471 4.39910 4.40574 4.71573 4.81806 4.88316 5.05327 5.19967 5.24771 5.34142 5.42039 5.63330 5.69492 5.89351 6.11977 6.19500 6.28158 6.41238 6.45297 6.56383 6.60098 6.72081 6.74096 6.81189 7.18506 7.23881 7.28641 7.75152 7.93390 8.12695 8.39937 8.94950 9.56148 11.05360 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.005366 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.553712 B = 5216.438386 C = 6215.686388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.005 4.005 11 N -0.480 5.480 12 C 0.062 3.938 13 C -0.075 4.075 14 C -0.078 4.078 15 C -0.148 4.148 16 C -0.093 4.093 17 C -0.193 4.193 18 C 0.117 3.883 19 O -0.304 6.304 20 C 0.410 3.590 21 F -0.205 7.205 22 F -0.198 7.198 23 C 0.019 3.981 24 H 0.260 0.740 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.181 0.819 35 H 0.055 0.945 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.361 -11.415 -10.444 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.018 3.982 10 C -0.134 4.134 11 N -0.202 5.202 12 C -0.066 4.066 13 C -0.076 4.076 14 C -0.096 4.096 15 C -0.166 4.166 16 C -0.111 4.111 17 C -0.212 4.212 18 C 0.073 3.927 19 O -0.221 6.221 20 C 0.320 3.680 21 F -0.187 7.187 22 F -0.180 7.180 23 C -0.109 4.109 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.147 0.853 34 H 0.197 0.803 35 H 0.074 0.926 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.920 -11.665 -10.161 15.498 hybrid contribution 0.719 1.276 -0.734 1.638 sum -0.201 -10.389 -10.895 15.056 Atomic orbital electron populations 1.69985 1.05963 1.26531 1.49881 1.25009 0.94784 0.99071 0.94722 0.86592 0.80207 0.83895 0.77624 1.19737 1.21045 1.20943 1.21070 0.92734 0.90256 1.51098 0.92426 1.20140 0.94278 0.90773 0.92980 1.24009 0.95757 0.97755 0.95884 1.68930 1.26889 1.14534 1.09866 1.21491 0.93753 0.97269 0.94115 1.19241 0.99034 0.93868 0.95436 1.20876 0.97977 0.92318 0.98457 1.21052 0.98043 0.99978 0.97541 1.20848 0.98820 0.93776 0.97670 1.21470 1.01165 0.95900 1.02643 1.18717 0.96329 0.81647 0.95971 1.86789 1.60305 1.22373 1.52613 1.23415 0.74162 0.96689 0.73783 1.93063 1.93090 1.85386 1.47158 1.93090 1.36144 1.96558 1.92193 1.23999 1.00079 0.86271 1.00601 0.92979 0.91946 0.92050 0.92853 0.91075 0.92915 0.85296 0.85950 0.85917 0.85278 0.80295 0.92646 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 13.26 55.43 0.74 -24.70 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -13.89 8.83 -34.44 -0.30 -14.20 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.04 0.94 3.76 -91.24 -0.34 0.60 16 10 C -0.01 -0.12 7.25 -7.55 -0.05 -0.17 16 11 N -0.48 -9.95 6.32 -246.10 -1.55 -11.50 16 12 C 0.06 1.09 4.71 -4.98 -0.02 1.06 16 13 C -0.07 -1.23 5.48 -104.47 -0.57 -1.80 16 14 C -0.08 -1.08 9.67 -39.61 -0.38 -1.46 16 15 C -0.15 -1.83 10.04 -39.56 -0.40 -2.22 16 16 C -0.09 -1.18 10.04 -39.60 -0.40 -1.58 16 17 C -0.19 -2.85 8.26 -39.43 -0.33 -3.17 16 18 C 0.12 1.94 6.45 -39.22 -0.25 1.69 16 19 O -0.30 -5.02 7.80 -19.42 -0.15 -5.17 16 20 C 0.41 5.38 5.98 101.05 0.60 5.98 16 21 F -0.21 -2.64 15.58 2.25 0.04 -2.61 16 22 F -0.20 -2.90 15.58 2.25 0.04 -2.86 16 23 C 0.02 0.45 5.72 -7.55 -0.04 0.40 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.06 1.74 8.11 -51.93 -0.42 1.32 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.05 1.10 7.87 -51.93 -0.41 0.69 16 28 H 0.07 1.10 7.94 -51.93 -0.41 0.69 16 29 H 0.05 0.96 7.01 -51.93 -0.36 0.59 16 30 H 0.13 1.53 8.04 -52.49 -0.42 1.11 16 31 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.13 1.81 5.10 -52.49 -0.27 1.54 16 34 H 0.18 1.71 8.14 -51.93 -0.42 1.28 16 35 H 0.06 1.29 7.09 -51.93 -0.37 0.92 16 36 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 LS Contribution 308.86 15.07 4.65 4.65 Total: -1.00 -30.25 308.86 -8.18 -38.43 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.32 Total: 1.09 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -2.59 Total: -13.14 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.82 Total: -36.20 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.15 Total: -5.17 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.07 Total: -5.47 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.25 -8.18 -38.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597191866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.576 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds