Wall clock time and date at job start Tue Mar 31 2020 05:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99763 * 2 1 4 4 H 1.48503 * 109.47194 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47716 * 300.00405 * 3 2 1 6 6 H 1.48508 * 109.47056 * 60.00514 * 3 2 1 7 7 C 1.37877 * 120.00347 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99920 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99732 * 359.97438 * 7 2 1 10 10 C 1.53515 * 114.17038 * 180.02562 * 9 7 2 11 11 N 1.47478 * 87.93232 * 220.14007 * 10 9 7 12 12 C 1.46895 * 111.00045 * 138.70367 * 11 10 9 13 13 C 1.50707 * 109.47211 * 169.99871 * 12 11 10 14 14 C 1.38163 * 120.02715 * 259.97984 * 13 12 11 15 15 C 1.38243 * 120.05438 * 180.02562 * 14 13 12 16 16 C 1.38289 * 120.11362 * 359.97438 * 15 14 13 17 17 C 1.38125 * 120.05159 * 0.02562 * 16 15 14 18 18 C 1.38708 * 120.02785 * 79.99890 * 13 12 11 19 19 O 1.35899 * 120.05461 * 359.95420 * 18 13 12 20 20 C 1.42903 * 116.99930 * 180.02562 * 19 18 13 21 21 F 1.39895 * 109.47392 * 300.00490 * 20 19 18 22 22 F 1.39899 * 109.46826 * 60.00682 * 20 19 18 23 23 C 1.47482 * 87.83516 * 27.00910 * 11 10 9 24 24 H 0.96998 * 120.00531 * 359.97438 * 1 2 3 25 25 H 1.08997 * 113.25772 * 312.95175 * 9 7 2 26 26 H 1.09001 * 113.47606 * 105.36932 * 10 9 7 27 27 H 1.09004 * 113.52907 * 334.91614 * 10 9 7 28 28 H 1.08996 * 109.47583 * 49.99617 * 12 11 10 29 29 H 1.09004 * 109.47059 * 289.99714 * 12 11 10 30 30 H 1.08001 * 119.97059 * 359.97438 * 14 13 12 31 31 H 1.08004 * 119.94070 * 180.02562 * 15 14 13 32 32 H 1.07993 * 119.96940 * 180.28495 * 16 15 14 33 33 H 1.08000 * 120.02364 * 180.02562 * 17 16 15 34 34 H 1.08998 * 109.46876 * 179.97438 * 20 19 18 35 35 H 1.08995 * 113.47844 * 87.76243 * 23 11 10 36 36 H 1.09003 * 113.47089 * 218.22626 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.1497 -3.7437 -0.0005 11 7 1.2051 -4.3601 -0.9506 12 6 1.9207 -5.0901 -2.0056 13 6 0.9384 -5.9038 -2.8083 14 6 0.7972 -7.2560 -2.5627 15 6 -0.1033 -8.0031 -3.2990 16 6 -0.8651 -7.3993 -4.2826 17 6 -0.7275 -6.0478 -4.5320 18 6 0.1758 -5.2958 -3.7946 19 8 0.3125 -3.9658 -4.0377 20 6 -0.5056 -3.4071 -5.0676 21 9 -0.2249 -4.0420 -6.2822 22 9 -1.8539 -3.5934 -4.7446 23 6 0.8518 -2.9992 -1.3959 24 1 -0.4851 0.8400 0.0004 25 1 0.4452 -2.5308 0.7327 26 1 2.1891 -4.2509 0.9635 27 1 3.1383 -3.5667 -0.4242 28 1 2.6576 -5.7533 -1.5529 29 1 2.4251 -4.3798 -2.6608 30 1 1.3913 -7.7300 -1.7953 31 1 -0.2125 -9.0600 -3.1052 32 1 -1.5711 -7.9842 -4.8533 33 1 -1.3230 -5.5766 -5.3000 34 1 -0.2980 -2.3409 -5.1581 35 1 1.4936 -2.6226 -2.1923 36 1 -0.2089 -2.8756 -1.6144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597191866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:46 Heat of formation + Delta-G solvation = -102.435972 kcal Electronic energy + Delta-G solvation = -22646.666125 eV Core-core repulsion = 18959.917686 eV Total energy + Delta-G solvation = -3686.748439 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.36049 -48.34732 -41.36562 -40.19924 -38.37423 -34.89043 -33.49183 -31.27000 -30.05888 -27.45173 -26.95296 -26.49013 -24.48967 -23.41955 -22.22268 -20.44747 -19.89759 -19.07898 -18.93521 -18.54378 -17.13218 -16.97702 -16.74169 -16.33432 -15.99175 -15.67296 -15.44151 -15.10642 -14.90752 -14.81044 -14.67547 -14.24750 -13.90178 -13.88115 -13.45162 -13.31499 -13.10380 -12.91600 -12.86908 -12.39675 -12.36613 -12.14884 -11.78995 -11.51427 -11.18178 -10.84555 -10.48557 -9.87689 -9.64523 -9.30623 -8.12861 -6.24323 0.32799 0.37884 1.42412 1.44615 1.56179 1.67188 2.43751 2.48348 2.70772 3.16269 3.45334 3.48129 3.67870 3.76594 3.79730 4.01816 4.23683 4.27859 4.37350 4.46089 4.53204 4.58233 4.74535 4.79931 4.90394 4.98414 5.01093 5.22892 5.29029 5.41755 5.53653 5.55347 5.64867 5.72068 5.87060 6.13015 6.31728 6.42025 6.85148 7.44006 8.97192 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.005366 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.553712 B = 5216.438386 C = 6215.686388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.016 3.984 3 Si 0.957 3.043 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.016 3.984 10 C 0.010 3.990 11 N -0.481 5.481 12 C 0.067 3.933 13 C -0.105 4.105 14 C -0.079 4.079 15 C -0.142 4.142 16 C -0.090 4.090 17 C -0.208 4.208 18 C 0.093 3.907 19 O -0.328 6.328 20 C 0.407 3.593 21 F -0.204 7.204 22 F -0.209 7.209 23 C 0.041 3.959 24 H 0.262 0.738 25 H 0.026 0.974 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.042 0.958 30 H 0.150 0.850 31 H 0.159 0.841 32 H 0.154 0.846 33 H 0.130 0.870 34 H 0.213 0.787 35 H 0.052 0.948 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 -12.757 -10.997 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.184 4.184 3 Si 0.783 3.217 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.003 4.003 10 C -0.118 4.118 11 N -0.203 5.203 12 C -0.061 4.061 13 C -0.106 4.106 14 C -0.097 4.097 15 C -0.160 4.160 16 C -0.108 4.108 17 C -0.226 4.226 18 C 0.049 3.951 19 O -0.245 6.245 20 C 0.317 3.683 21 F -0.186 7.186 22 F -0.191 7.191 23 C -0.088 4.088 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.060 0.940 30 H 0.167 0.833 31 H 0.176 0.824 32 H 0.171 0.829 33 H 0.148 0.852 34 H 0.229 0.771 35 H 0.070 0.930 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.036 -13.025 -10.720 16.869 hybrid contribution 0.402 1.581 -0.589 1.734 sum 0.365 -11.443 -11.309 16.093 Atomic orbital electron populations 1.70115 1.07585 1.27450 1.51026 1.25817 0.95545 1.02645 0.94346 0.85520 0.79182 0.79405 0.77624 1.18776 1.20496 1.20732 1.21379 0.92972 0.91312 1.50814 0.92188 1.20101 0.94521 0.92293 0.93395 1.23834 0.95435 0.95644 0.96909 1.68849 1.27508 1.13168 1.10796 1.21459 0.94299 0.97168 0.93178 1.19339 0.99941 0.95031 0.96262 1.21205 0.98265 0.91408 0.98860 1.21469 0.96623 1.01578 0.96342 1.21294 0.98803 0.93111 0.97569 1.21639 1.01178 0.96974 1.02858 1.19034 0.97309 0.81853 0.96875 1.86740 1.61184 1.22859 1.53756 1.23933 0.73317 0.97867 0.73169 1.93055 1.93007 1.85585 1.46916 1.93061 1.37035 1.96680 1.92316 1.23610 0.98219 0.87893 0.99068 0.92907 0.95599 0.90630 0.91847 0.88744 0.93953 0.83251 0.82369 0.82881 0.85227 0.77082 0.93030 0.94906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.27 13.26 21.45 0.28 -53.98 16 2 C 0.02 0.86 5.46 84.66 0.46 1.33 16 3 Si 0.96 42.90 29.54 68.60 2.03 44.92 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.53 -28.83 8.83 25.60 0.23 -28.60 16 8 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 9 C 0.02 0.83 3.76 -11.20 -0.04 0.79 16 10 C 0.01 0.43 7.25 83.57 0.61 1.04 16 11 N -0.48 -19.89 6.32 -932.51 -5.89 -25.78 16 12 C 0.07 2.29 4.71 85.56 0.40 2.69 16 13 C -0.10 -3.34 5.48 -19.77 -0.11 -3.45 16 14 C -0.08 -2.00 9.67 22.25 0.22 -1.79 16 15 C -0.14 -3.03 10.04 22.28 0.22 -2.81 16 16 C -0.09 -2.05 10.04 22.25 0.22 -1.83 16 17 C -0.21 -5.94 8.26 22.36 0.18 -5.76 16 18 C 0.09 3.06 6.45 22.50 0.15 3.21 16 19 O -0.33 -11.04 7.80 -92.41 -0.72 -11.76 16 20 C 0.41 10.75 5.98 113.37 0.68 11.43 16 21 F -0.20 -5.21 15.58 44.97 0.70 -4.51 16 22 F -0.21 -6.21 15.58 44.97 0.70 -5.51 16 23 C 0.04 1.97 5.72 83.57 0.48 2.45 16 24 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 25 H 0.03 1.51 8.11 -2.39 -0.02 1.49 16 26 H 0.08 2.94 8.14 -2.39 -0.02 2.93 16 27 H 0.06 2.53 7.87 -2.39 -0.02 2.51 16 28 H 0.09 2.74 7.94 -2.39 -0.02 2.72 16 29 H 0.04 1.53 7.01 -2.38 -0.02 1.51 16 30 H 0.15 3.06 8.04 -2.91 -0.02 3.04 16 31 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.13 3.58 5.10 -2.91 -0.01 3.56 16 34 H 0.21 3.99 8.14 -2.39 -0.02 3.97 16 35 H 0.05 2.46 7.09 -2.39 -0.02 2.45 16 36 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -66.23 308.86 1.89 -64.35 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 1.09 Total: 13.58 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 3.69 Total: -21.31 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -5.60 Total: -79.76 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.72 Total: -11.76 kcal Atomic # 9 Polarization: -11.42 SS G_CDS: 1.40 Total: -10.02 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -66.23 1.89 -64.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597191866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.090 kcal (2) G-P(sol) polarization free energy of solvation -66.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds