Wall clock time and date at job start Tue Mar 31 2020 06:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53008 * 109.47287 * 2 1 4 4 H 1.09002 * 109.46916 * 305.00442 * 3 2 1 5 5 C 1.50696 * 109.47341 * 185.00035 * 3 2 1 6 6 H 1.07998 * 120.00244 * 240.00038 * 5 3 2 7 7 C 1.37881 * 119.99729 * 60.00075 * 5 3 2 8 8 N 1.31516 * 120.00316 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99984 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47201 * 89.99777 * 9 7 5 11 11 H 1.48498 * 109.47599 * 210.00360 * 9 7 5 12 12 H 1.48502 * 109.46859 * 330.00219 * 9 7 5 13 13 N 1.46500 * 109.46837 * 64.99875 * 3 2 1 14 14 C 1.34773 * 120.00431 * 275.00470 * 13 3 2 15 15 O 1.21573 * 119.99906 * 359.97438 * 14 13 3 16 16 C 1.47696 * 120.00155 * 179.72294 * 14 13 3 17 17 C 1.39690 * 120.15299 * 0.27759 * 16 14 13 18 18 C 1.37844 * 119.92168 * 179.97438 * 17 16 14 19 19 C 1.38453 * 120.24437 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.84310 * 180.02562 * 19 18 17 21 21 C 1.38388 * 120.31186 * 359.97438 * 19 18 17 22 22 F 1.35094 * 119.96185 * 180.02562 * 21 19 18 23 23 C 1.38546 * 120.07003 * 359.72216 * 21 19 18 24 24 F 1.35093 * 120.11857 * 180.27950 * 23 21 19 25 25 H 1.09001 * 109.47577 * 299.99577 * 1 2 3 26 26 H 1.09006 * 109.47510 * 59.99695 * 1 2 3 27 27 H 1.08999 * 109.47385 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47146 * 240.00626 * 2 1 3 29 29 H 1.08993 * 109.47628 * 120.00213 * 2 1 3 30 30 H 0.97000 * 120.00330 * 180.02562 * 8 7 5 31 31 H 0.97000 * 119.99456 * 95.00032 * 13 3 2 32 32 H 1.07995 * 120.03620 * 0.02562 * 17 16 14 33 33 H 1.07999 * 119.87669 * 179.97438 * 18 17 16 34 34 H 1.08997 * 109.47040 * 89.99646 * 20 19 18 35 35 H 1.09000 * 109.46948 * 209.99747 * 20 19 18 36 36 H 1.09000 * 109.46815 * 329.99521 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1734 9 14 6.0048 0.8813 -1.3820 10 1 6.5548 -0.3501 -0.7603 11 1 6.3828 0.9225 -2.8174 12 1 6.5568 2.0739 -0.6903 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6643 1.3671 15 8 -0.3412 2.6326 0.4320 16 6 0.0421 3.3193 2.6312 17 6 0.9317 3.3581 3.7075 18 6 0.5602 3.9710 4.8849 19 6 -0.6924 4.5484 5.0055 20 6 -1.0890 5.2166 6.2967 21 6 -1.5816 4.5157 3.9456 22 9 -2.8018 5.0817 4.0708 23 6 -1.2193 3.9085 2.7541 24 9 -2.0844 3.8810 1.7168 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.8291 -0.0609 -2.9501 31 1 2.2719 2.1231 1.9978 32 1 1.9097 2.9091 3.6168 33 1 1.2484 4.0003 5.7167 34 1 -0.8070 6.2689 6.2627 35 1 -2.1673 5.1336 6.4325 36 1 -0.5795 4.7306 7.1287 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601444664.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:54 Heat of formation + Delta-G solvation = -110.660538 kcal Electronic energy + Delta-G solvation = -22239.913558 eV Core-core repulsion = 18552.808475 eV Total energy + Delta-G solvation = -3687.105083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.42910 -48.44675 -39.79088 -38.26167 -35.12163 -33.21210 -32.29847 -30.95834 -30.35541 -27.97726 -26.71164 -23.42083 -22.87467 -22.58475 -20.64811 -19.46162 -18.34969 -17.43452 -16.93648 -16.47235 -16.40177 -15.57698 -15.28237 -14.96293 -14.59938 -14.46869 -14.41097 -14.09021 -13.67929 -13.31806 -13.24437 -12.72471 -12.45607 -12.27311 -11.97515 -11.70408 -11.65784 -11.45954 -11.27624 -11.02533 -10.85086 -10.35139 -10.21912 -9.66746 -9.20449 -9.08064 -8.95124 -8.84258 -8.54146 -7.90022 -6.15643 -4.25723 0.53101 0.82659 2.87867 3.22049 3.29190 3.30858 3.50923 3.86853 3.96128 4.22437 4.32013 4.45395 4.53339 4.76242 5.00832 5.15187 5.16483 5.25268 5.38343 5.70762 5.73488 5.77691 5.91715 6.02119 6.37900 6.44289 6.57881 6.64247 7.01735 7.17036 7.30852 7.37250 7.57511 7.67436 7.85284 8.13597 8.54709 8.71421 9.00205 9.41381 10.89692 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.004355 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.838035 B = 6428.119749 C = 7108.120670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.697 5.697 14 C 0.540 3.460 15 O -0.527 6.527 16 C -0.139 4.139 17 C -0.065 4.065 18 C -0.113 4.113 19 C -0.078 4.078 20 C -0.116 4.116 21 C 0.049 3.951 22 F -0.127 7.127 23 C 0.127 3.873 24 F -0.103 7.103 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.024 0.976 28 H 0.101 0.899 29 H 0.032 0.968 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.892 6.701 16.363 18.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.345 5.345 14 C 0.324 3.676 15 O -0.406 6.406 16 C -0.143 4.143 17 C -0.084 4.084 18 C -0.131 4.131 19 C -0.079 4.079 20 C -0.172 4.172 21 C 0.029 3.971 22 F -0.106 7.106 23 C 0.106 3.894 24 F -0.081 7.081 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.493 6.578 15.411 17.634 hybrid contribution 0.898 0.038 0.042 0.900 sum -4.595 6.615 15.454 17.427 Atomic orbital electron populations 1.21850 0.98299 0.98175 1.01274 1.21943 0.92633 0.99620 1.02412 1.18871 0.94377 0.89254 0.80623 0.93028 1.21197 0.90498 1.39316 1.06444 0.92025 1.24882 0.98657 0.94744 0.95313 1.69892 1.35189 1.37385 1.09321 0.86444 0.84761 0.78433 0.77440 1.20524 1.21055 1.19849 1.46433 1.13951 1.55337 1.18787 1.17794 0.83579 0.79986 0.86215 1.90829 1.51184 1.59171 1.39375 1.20420 0.93438 1.02833 0.97630 1.21382 0.99235 0.96477 0.91331 1.20908 0.95225 0.98546 0.98460 1.19966 0.93634 0.99083 0.95219 1.20791 1.02804 1.00664 0.92973 1.17366 0.83057 1.02409 0.94249 1.91502 1.40216 1.82721 1.96151 1.17671 0.88511 0.99135 0.84123 1.91623 1.67373 1.93795 1.55329 0.94414 0.93036 0.95720 0.88130 0.94932 0.92482 0.77883 0.83618 0.83832 0.90177 0.90832 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.51 37.15 0.32 -2.81 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.66 2.24 -69.08 -0.15 6.51 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 5 C -0.54 -13.75 8.73 -34.44 -0.30 -14.05 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.29 11.29 55.43 0.63 -23.66 16 9 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 N -0.70 -14.08 4.97 -55.92 -0.28 -14.36 16 14 C 0.54 10.96 6.34 -12.40 -0.08 10.88 16 15 O -0.53 -12.71 12.48 5.30 0.07 -12.64 16 16 C -0.14 -2.23 5.88 -104.92 -0.62 -2.84 16 17 C -0.07 -0.77 9.54 -39.18 -0.37 -1.14 16 18 C -0.11 -1.05 9.67 -39.65 -0.38 -1.44 16 19 C -0.08 -0.80 5.89 -104.49 -0.62 -1.41 16 20 C -0.12 -0.82 9.82 36.00 0.35 -0.46 16 21 C 0.05 0.66 7.24 -39.41 -0.29 0.38 16 22 F -0.13 -1.74 16.37 2.25 0.04 -1.70 16 23 C 0.13 2.07 7.29 -38.90 -0.28 1.79 16 24 F -0.10 -1.97 15.46 2.25 0.03 -1.94 16 25 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 26 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.39 6.53 6.57 -40.82 -0.27 6.27 16 32 H 0.15 1.42 6.40 -52.49 -0.34 1.08 16 33 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.53 7.62 -51.93 -0.40 0.14 16 36 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 LS Contribution 307.55 15.07 4.63 4.63 Total: -1.00 -30.56 307.55 -6.62 -37.17 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -4.05 Total: 3.51 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -2.66 Total: -6.12 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.35 Total: -38.02 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.64 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.07 Total: -3.64 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.56 -6.62 -37.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601444664.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.487 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds