Wall clock time and date at job start Tue Mar 31 2020 06:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47103 * 2 1 4 4 H 1.09000 * 109.46577 * 304.99367 * 3 2 1 5 5 N 1.46497 * 109.47057 * 64.99542 * 3 2 1 6 6 C 1.34784 * 119.99794 * 204.99962 * 5 3 2 7 7 O 1.21614 * 119.99690 * 0.02562 * 6 5 3 8 8 C 1.47430 * 119.99934 * 180.02562 * 6 5 3 9 9 C 1.39222 * 120.28208 * 354.15799 * 8 6 5 10 10 C 1.38224 * 120.09203 * 180.25333 * 9 8 6 11 11 C 1.38831 * 120.67225 * 359.45295 * 10 9 8 12 12 C 1.37600 * 120.57091 * 0.55260 * 11 10 9 13 13 C 1.40698 * 119.88069 * 359.72808 * 12 11 10 14 14 C 1.40896 * 120.32915 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00131 * 145.82249 * 14 13 12 16 16 C 1.40274 * 119.99546 * 325.82279 * 14 13 12 17 17 N 1.30625 * 119.99956 * 350.76668 * 16 14 13 18 18 Si 1.86801 * 119.99771 * 170.76302 * 16 14 13 19 19 H 1.48497 * 109.47001 * 60.00296 * 18 16 14 20 20 H 1.48499 * 109.47015 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47196 * 299.99866 * 18 16 14 22 22 C 1.52995 * 109.46909 * 184.99749 * 3 2 1 23 23 F 1.39903 * 109.47304 * 304.99697 * 22 3 2 24 24 F 1.39902 * 109.47611 * 65.00036 * 22 3 2 25 25 H 1.09005 * 109.47083 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47631 * 300.00359 * 1 2 3 27 27 H 1.09002 * 109.47087 * 60.00645 * 1 2 3 28 28 H 1.08998 * 109.47631 * 239.99641 * 2 1 3 29 29 H 1.09002 * 109.47087 * 119.99355 * 2 1 3 30 30 H 0.96994 * 120.00433 * 25.00582 * 5 3 2 31 31 H 1.07994 * 119.95590 * 359.97438 * 9 8 6 32 32 H 1.08000 * 119.66116 * 179.70385 * 10 9 8 33 33 H 1.08002 * 119.71052 * 180.30282 * 11 10 9 34 34 H 1.07995 * 120.05476 * 179.75458 * 12 11 10 35 35 H 0.97000 * 120.00118 * 180.02562 * 17 16 14 36 36 H 1.09007 * 109.47423 * 184.99708 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 7 1.6523 2.0975 1.2517 6 6 1.5255 3.4385 1.2994 7 8 1.7324 4.1046 0.3032 8 6 1.1359 4.0977 2.5593 9 6 0.7800 3.3363 3.6692 10 6 0.4104 3.9586 4.8468 11 6 0.3996 5.3435 4.9430 12 6 0.7462 6.1227 3.8631 13 6 1.1208 5.5142 2.6511 14 6 1.4780 6.3030 1.5396 15 1 2.2400 5.9591 0.8559 16 6 0.8438 7.5349 1.3210 17 7 -0.1967 7.8698 2.0362 18 14 1.4873 8.6966 0.0073 19 1 1.4333 8.0255 -1.3163 20 1 0.6488 9.9218 -0.0238 21 1 2.8917 9.0662 0.3181 22 6 3.5648 1.4443 -0.1257 23 9 4.1174 0.6573 0.8905 24 9 3.9308 0.9224 -1.3710 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.4870 1.5662 2.0462 31 1 0.7884 2.2581 3.6086 32 1 0.1309 3.3612 5.7020 33 1 0.1128 5.8133 5.8722 34 1 0.7311 7.1994 3.9460 35 1 -0.6355 8.7215 1.8849 36 1 3.9356 2.4655 -0.0366 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601601654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:05 Heat of formation + Delta-G solvation = -133.860705 kcal Electronic energy + Delta-G solvation = -22467.712713 eV Core-core repulsion = 18779.601596 eV Total energy + Delta-G solvation = -3688.111118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.80601 -46.78223 -39.23379 -37.12884 -35.56920 -33.79040 -32.02423 -30.09289 -29.65690 -28.20267 -25.46895 -23.90927 -22.53119 -21.21415 -20.52202 -19.62685 -17.65596 -17.16181 -17.15627 -16.55997 -16.32046 -15.48816 -15.19661 -14.31371 -14.11241 -13.99130 -13.64578 -13.50880 -13.17697 -13.13976 -13.03231 -12.75110 -12.39475 -12.20557 -12.15958 -11.66492 -11.38053 -11.15849 -11.07545 -10.97146 -10.76040 -10.69252 -10.58620 -10.16681 -9.74401 -9.31351 -8.64650 -8.56112 -7.65881 -7.42922 -6.85729 -4.45494 2.26283 2.77523 3.06081 3.11427 3.21096 3.55762 3.86158 3.92986 4.17833 4.43479 4.50349 4.63855 4.98661 5.09971 5.19219 5.40590 5.56149 5.65153 5.68512 5.88628 5.93502 5.95504 6.14291 6.23938 6.24714 6.54168 6.86462 6.89695 7.06307 7.15508 7.39790 7.55886 7.81460 7.90876 8.10687 8.21599 8.58557 8.75122 8.82212 9.21856 10.09403 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015805 B = 0.005952 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.132249 B = 4702.797749 C = 5741.347894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.107 3.893 4 H 0.113 0.887 5 N -0.737 5.737 6 C 0.565 3.435 7 O -0.536 6.536 8 C -0.265 4.265 9 C -0.055 4.055 10 C -0.244 4.244 11 C -0.095 4.095 12 C -0.147 4.147 13 C 0.147 3.853 14 C -0.416 4.416 15 H 0.104 0.896 16 C 0.070 3.930 17 N -0.791 5.791 18 Si 0.916 3.084 19 H -0.261 1.261 20 H -0.279 1.279 21 H -0.263 1.263 22 C 0.246 3.754 23 F -0.206 7.206 24 F -0.207 7.207 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.399 0.601 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.283 0.717 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.064 -9.722 -1.617 10.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C 0.000 4.000 4 H 0.131 0.869 5 N -0.392 5.392 6 C 0.360 3.640 7 O -0.414 6.414 8 C -0.270 4.270 9 C -0.074 4.074 10 C -0.264 4.264 11 C -0.113 4.113 12 C -0.166 4.166 13 C 0.142 3.858 14 C -0.444 4.444 15 H 0.122 0.878 16 C -0.149 4.149 17 N -0.416 5.416 18 Si 0.741 3.259 19 H -0.186 1.186 20 H -0.204 1.204 21 H -0.187 1.187 22 C 0.190 3.810 23 F -0.188 7.188 24 F -0.189 7.189 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.234 0.766 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.136 0.864 35 H 0.094 0.906 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.042 -9.053 -2.327 9.568 hybrid contribution 0.084 0.144 -0.095 0.192 sum 2.127 -8.909 -2.422 9.474 Atomic orbital electron populations 1.21721 0.94399 1.01622 1.02857 1.21775 0.97450 0.94299 1.03535 1.21757 0.90779 0.95688 0.91784 0.86876 1.46020 1.73611 1.07973 1.11610 1.18564 0.76010 0.80077 0.89332 1.90696 1.50809 1.63113 1.36759 1.19345 1.20512 0.94272 0.92821 1.20645 0.97107 0.96516 0.93157 1.20294 1.14038 0.94425 0.97608 1.20819 0.99267 0.93763 0.97499 1.21358 1.03956 0.99388 0.91875 1.17465 0.86424 0.89391 0.92478 1.20133 1.17250 0.99384 1.07616 0.87783 1.26122 0.93820 0.97951 0.96981 1.69699 1.14880 1.21717 1.35290 0.86213 0.79752 0.78530 0.81435 1.18567 1.20400 1.18728 1.22622 0.94952 0.92620 0.70795 1.92937 1.87488 1.77760 1.60575 1.92938 1.93048 1.89222 1.43654 0.92495 0.91980 0.92409 0.90201 0.90780 0.76577 0.89226 0.89035 0.89022 0.86442 0.90558 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.80 37.16 0.36 -1.27 16 2 C -0.13 -1.52 5.19 -26.73 -0.14 -1.66 16 3 C 0.11 1.55 2.17 -67.93 -0.15 1.40 16 4 H 0.11 1.78 7.58 -51.93 -0.39 1.38 16 5 N -0.74 -12.14 4.46 -54.88 -0.24 -12.38 16 6 C 0.57 12.21 7.68 -12.51 -0.10 12.11 16 7 O -0.54 -13.11 13.26 5.27 0.07 -13.04 16 8 C -0.26 -6.18 5.92 -104.37 -0.62 -6.80 16 9 C -0.06 -1.13 9.52 -39.22 -0.37 -1.51 16 10 C -0.24 -5.03 10.03 -39.37 -0.39 -5.43 16 11 C -0.09 -2.07 10.01 -39.59 -0.40 -2.47 16 12 C -0.15 -3.62 8.62 -38.89 -0.34 -3.96 16 13 C 0.15 3.81 5.51 -106.54 -0.59 3.22 16 14 C -0.42 -11.06 7.68 -37.81 -0.29 -11.35 16 15 H 0.10 2.84 5.92 -52.49 -0.31 2.53 16 16 C 0.07 1.75 5.25 -17.30 -0.09 1.66 16 17 N -0.79 -20.06 11.14 55.56 0.62 -19.45 16 18 Si 0.92 19.19 29.57 -169.99 -5.03 14.17 16 19 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 22 C 0.25 3.59 5.05 37.15 0.19 3.78 16 23 F -0.21 -3.07 16.70 2.25 0.04 -3.03 16 24 F -0.21 -3.01 16.93 2.25 0.04 -2.97 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.74 7.75 -51.93 -0.40 0.34 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.85 7.82 -51.93 -0.41 0.44 16 29 H 0.07 0.81 7.84 -51.93 -0.41 0.40 16 30 H 0.40 5.80 6.67 -40.82 -0.27 5.53 16 31 H 0.09 1.50 6.44 -52.49 -0.34 1.17 16 32 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.12 2.97 6.60 -52.49 -0.35 2.62 16 35 H 0.28 6.56 8.29 -40.82 -0.34 6.22 16 36 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 311.27 15.07 4.69 4.69 Total: -1.00 -27.95 311.27 -6.86 -34.81 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -4.12 Total: 9.47 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -2.92 Total: -12.25 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.37 Total: -31.83 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.07 Total: -13.04 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 0.08 Total: -6.00 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.95 -6.86 -34.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601601654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.056 kcal (2) G-P(sol) polarization free energy of solvation -27.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds