Wall clock time and date at job start Tue Mar 31 2020 06:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39904 * 109.46744 * 2 1 4 4 F 1.39899 * 109.47068 * 240.00457 * 2 1 3 5 5 C 1.52998 * 109.47355 * 120.00072 * 2 1 3 6 6 C 1.52998 * 109.46977 * 180.02562 * 5 2 1 7 7 C 1.50698 * 109.47266 * 180.02562 * 6 5 2 8 8 O 1.21280 * 119.99698 * 354.83556 * 7 6 5 9 9 N 1.34779 * 120.00551 * 174.84079 * 7 6 5 10 10 C 1.37145 * 119.99420 * 5.67082 * 9 7 6 11 11 H 1.07998 * 119.99633 * 55.67594 * 10 9 7 12 12 C 1.38885 * 120.00095 * 235.66821 * 10 9 7 13 13 N 1.31432 * 119.99822 * 9.25400 * 12 10 9 14 14 Si 1.86797 * 120.00347 * 189.25114 * 12 10 9 15 15 H 1.48497 * 109.46879 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47324 * 119.99950 * 14 12 10 17 17 H 1.48496 * 109.47473 * 240.00378 * 14 12 10 18 18 C 1.39785 * 120.00130 * 185.67673 * 9 7 6 19 19 C 1.38961 * 120.07283 * 175.18842 * 18 9 7 20 20 C 1.38081 * 119.91704 * 179.97438 * 19 18 9 21 21 C 1.38303 * 120.08186 * 359.97438 * 20 19 18 22 22 C 1.38313 * 120.15414 * 0.02562 * 21 20 19 23 23 C 1.38080 * 120.07962 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47754 * 299.99290 * 1 2 3 25 25 H 1.09000 * 109.47900 * 60.00001 * 1 2 3 26 26 H 1.09005 * 109.47031 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47096 * 60.00649 * 5 2 1 28 28 H 1.09000 * 109.47046 * 300.00022 * 5 2 1 29 29 H 1.09000 * 109.47496 * 60.00294 * 6 5 2 30 30 H 1.09006 * 109.46959 * 300.00165 * 6 5 2 31 31 H 0.96994 * 119.99721 * 184.98388 * 13 12 10 32 32 H 1.07998 * 120.04322 * 359.69957 * 19 18 9 33 33 H 1.08007 * 119.96193 * 179.97438 * 20 19 18 34 34 H 1.08004 * 119.92595 * 179.97438 * 21 20 19 35 35 H 1.08004 * 119.95761 * 180.02562 * 22 21 20 36 36 H 1.08000 * 120.04146 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9962 1.3191 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0400 -0.7212 1.2492 6 6 3.5700 -0.7206 1.2494 7 6 4.0724 -1.4316 2.4795 8 8 3.2883 -1.8107 3.3235 9 7 5.3931 -1.6460 2.6418 10 6 6.2886 -1.1168 1.7480 11 1 6.2942 -0.0544 1.5542 12 6 7.1882 -1.9472 1.0922 13 7 7.0661 -3.2525 1.1857 14 14 8.5716 -1.2089 0.0771 15 1 8.4901 0.2728 0.1327 16 1 9.8787 -1.6531 0.6244 17 1 8.4463 -1.6594 -1.3324 18 6 5.8501 -2.4078 3.7211 19 6 7.2007 -2.7140 3.8351 20 6 7.6487 -3.4663 4.9028 21 6 6.7550 -3.9146 5.8584 22 6 5.4100 -3.6117 5.7481 23 6 4.9549 -2.8599 4.6830 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6768 -1.7489 1.2491 28 1 1.6767 -0.2074 2.1392 29 1 3.9330 0.3071 1.2497 30 1 3.9336 -1.2342 0.3594 31 1 7.7350 -3.8318 0.7884 32 1 7.8986 -2.3677 3.0871 33 1 8.6983 -3.7050 4.9918 34 1 7.1081 -4.5032 6.6922 35 1 4.7149 -3.9631 6.4963 36 1 3.9044 -2.6241 4.5973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604517604.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:54 Heat of formation + Delta-G solvation = -102.176274 kcal Electronic energy + Delta-G solvation = -22554.821739 eV Core-core repulsion = 18868.084562 eV Total energy + Delta-G solvation = -3686.737178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.73692 -46.71377 -39.74294 -37.32920 -35.07482 -33.80713 -31.97820 -30.60996 -29.61767 -28.62355 -25.34955 -24.61214 -21.87844 -21.30817 -20.80049 -19.35879 -17.74059 -17.41609 -16.72737 -15.99600 -15.60761 -15.56183 -15.16916 -14.74938 -14.33867 -13.73326 -13.53068 -13.14613 -13.11984 -12.98697 -12.92695 -12.77086 -12.51660 -12.32025 -12.05079 -11.84141 -11.60603 -11.36057 -11.24886 -11.06324 -10.84177 -10.66775 -10.57650 -10.44753 -10.04871 -9.25350 -8.75772 -8.17400 -7.80456 -6.89759 -6.33044 -4.56509 2.40445 2.55829 3.02529 3.12848 3.16367 3.70421 3.90839 3.97455 4.26064 4.42941 4.59085 4.71835 4.79581 5.11805 5.35392 5.44336 5.49045 5.76778 5.79607 5.83591 5.87628 5.99926 6.15265 6.16717 6.38446 6.52434 6.70537 6.73443 6.91828 7.14046 7.24356 7.50464 7.60701 7.68374 7.76786 8.06316 8.41790 8.82817 9.21245 9.59446 10.45890 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.006342 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.377375 B = 4413.954794 C = 5875.635461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.285 3.715 3 F -0.203 7.203 4 F -0.201 7.201 5 C -0.144 4.144 6 C -0.121 4.121 7 C 0.497 3.503 8 O -0.570 6.570 9 N -0.382 5.382 10 C -0.369 4.369 11 H 0.094 0.906 12 C 0.056 3.944 13 N -0.841 5.841 14 Si 0.914 3.086 15 H -0.263 1.263 16 H -0.275 1.275 17 H -0.276 1.276 18 C 0.183 3.817 19 C -0.105 4.105 20 C -0.124 4.124 21 C -0.173 4.173 22 C -0.121 4.121 23 C -0.193 4.193 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.274 0.726 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.491 3.777 -0.809 7.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.249 3.751 3 F -0.185 7.185 4 F -0.182 7.182 5 C -0.182 4.182 6 C -0.161 4.161 7 C 0.289 3.711 8 O -0.456 6.456 9 N -0.089 5.089 10 C -0.496 4.496 11 H 0.112 0.888 12 C -0.154 4.154 13 N -0.473 5.473 14 Si 0.739 3.261 15 H -0.187 1.187 16 H -0.201 1.201 17 H -0.202 1.202 18 C 0.086 3.914 19 C -0.126 4.126 20 C -0.143 4.143 21 C -0.193 4.193 22 C -0.140 4.140 23 C -0.213 4.213 24 H 0.107 0.893 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.149 0.851 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.815 3.470 -0.646 7.675 hybrid contribution 1.167 0.096 -0.755 1.394 sum -5.648 3.566 -1.401 6.825 Atomic orbital electron populations 1.22743 0.91987 1.05318 1.04908 1.21220 0.93384 0.75778 0.84753 1.92991 1.90636 1.37900 1.96927 1.93008 1.90595 1.80967 1.53675 1.22407 0.97541 1.02744 0.95527 1.21302 0.93165 1.02652 0.98982 1.20747 0.82304 0.80724 0.87310 1.90164 1.56450 1.54638 1.44330 1.40988 1.04531 1.42902 1.20491 1.19388 1.16237 0.93352 1.20627 0.88794 1.25624 0.99249 0.94958 0.95546 1.70042 1.33401 1.02677 1.41147 0.86075 0.80513 0.79906 0.79654 1.18728 1.20082 1.20183 1.18304 0.92782 0.93371 0.86931 1.21039 0.95207 0.99145 0.97220 1.20775 0.98328 0.99909 0.95292 1.20788 0.94070 1.04330 1.00084 1.20867 0.94972 0.99769 0.98381 1.22798 1.03551 1.00661 0.94240 0.89336 0.90423 0.89302 0.88558 0.88482 0.88988 0.88055 0.91522 0.85091 0.87793 0.88198 0.87747 0.80823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.91 9.38 37.16 0.35 -1.56 16 2 C 0.28 3.97 2.11 -26.73 -0.06 3.91 16 3 F -0.20 -3.10 16.54 2.25 0.04 -3.06 16 4 F -0.20 -3.21 16.54 2.25 0.04 -3.17 16 5 C -0.14 -2.23 4.11 -26.73 -0.11 -2.34 16 6 C -0.12 -2.33 4.28 -27.88 -0.12 -2.45 16 7 C 0.50 11.48 7.57 -10.99 -0.08 11.40 16 8 O -0.57 -13.52 12.37 5.56 0.07 -13.45 16 9 N -0.38 -9.56 2.62 -58.98 -0.15 -9.72 16 10 C -0.37 -9.06 7.61 -14.94 -0.11 -9.18 16 11 H 0.09 2.21 7.85 -52.49 -0.41 1.80 16 12 C 0.06 1.36 3.49 -17.48 -0.06 1.30 16 13 N -0.84 -21.78 11.39 55.49 0.63 -21.15 16 14 Si 0.91 18.75 29.57 -169.99 -5.03 13.73 16 15 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 16 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 17 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 18 C 0.18 4.61 6.05 -83.70 -0.51 4.10 16 19 C -0.11 -2.54 7.87 -39.37 -0.31 -2.85 16 20 C -0.12 -2.63 10.04 -39.61 -0.40 -3.03 16 21 C -0.17 -3.46 10.04 -39.53 -0.40 -3.86 16 22 C -0.12 -2.52 10.04 -39.61 -0.40 -2.92 16 23 C -0.19 -4.58 9.06 -39.37 -0.36 -4.93 16 24 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.10 1.43 8.04 -51.93 -0.42 1.01 16 29 H 0.09 1.70 7.80 -51.93 -0.40 1.29 16 30 H 0.10 2.06 7.70 -51.93 -0.40 1.66 16 31 H 0.27 6.71 8.32 -40.82 -0.34 6.37 16 32 H 0.13 3.27 5.15 -52.49 -0.27 3.00 16 33 H 0.10 1.92 8.06 -52.48 -0.42 1.50 16 34 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 35 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 36 H 0.18 4.22 4.50 -56.37 -0.25 3.97 16 LS Contribution 308.12 15.07 4.64 4.64 Total: -1.00 -28.11 308.12 -6.57 -34.68 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -4.25 Total: 9.90 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -2.56 Total: -12.41 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 0.48 Total: -30.87 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.07 Total: -13.45 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.07 Total: -6.23 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.11 -6.57 -34.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604517604.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.495 kcal (2) G-P(sol) polarization free energy of solvation -28.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds