Wall clock time and date at job start Tue Mar 31 2020 05:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00027 * 2 1 4 4 H 1.48497 * 109.47284 * 272.12261 * 3 2 1 5 5 H 1.48504 * 109.47228 * 32.12698 * 3 2 1 6 6 H 1.48508 * 109.46992 * 152.12359 * 3 2 1 7 7 C 1.38816 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00257 * 344.93210 * 7 2 1 9 9 N 1.36936 * 119.99868 * 164.92852 * 7 2 1 10 10 C 1.46503 * 120.00077 * 124.40906 * 9 7 2 11 11 C 1.52992 * 109.46859 * 90.00125 * 10 9 7 12 12 H 1.08998 * 109.47306 * 304.99772 * 11 10 9 13 13 O 1.42896 * 109.47414 * 65.00260 * 11 10 9 14 14 C 1.50705 * 109.47043 * 184.99834 * 11 10 9 15 15 C 1.38264 * 119.96250 * 99.99685 * 14 11 10 16 16 C 1.38212 * 120.06752 * 179.72367 * 15 14 11 17 17 C 1.38406 * 120.00475 * 0.02562 * 16 15 14 18 18 F 1.35095 * 120.04041 * 180.02562 * 17 16 15 19 19 C 1.38655 * 119.92615 * 359.97438 * 17 16 15 20 20 F 1.35100 * 120.03194 * 179.97438 * 19 17 16 21 21 C 1.38214 * 119.96725 * 279.72685 * 14 11 10 22 22 C 1.46502 * 119.99909 * 304.41043 * 9 7 2 23 23 C 1.53004 * 117.50044 * 3.06861 * 22 9 7 24 24 C 1.52997 * 117.50097 * 294.44587 * 22 9 7 25 25 H 0.97002 * 120.00220 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.46905 * 329.99869 * 10 9 7 27 27 H 1.09001 * 109.46732 * 210.00077 * 10 9 7 28 28 H 0.96703 * 114.00648 * 59.99627 * 13 11 10 29 29 H 1.08002 * 119.96026 * 359.70740 * 15 14 11 30 30 H 1.07999 * 119.99567 * 179.97438 * 16 15 14 31 31 H 1.08001 * 119.99382 * 0.25641 * 21 14 11 32 32 H 1.09004 * 115.55095 * 148.77432 * 22 9 7 33 33 H 1.09000 * 117.49647 * 359.97438 * 23 22 9 34 34 H 1.08998 * 117.49970 * 145.01978 * 23 22 9 35 35 H 1.08997 * 117.50172 * 214.98194 * 24 22 9 36 36 H 1.09001 * 117.49529 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4528 2.0723 -1.3991 5 1 1.4708 2.6392 0.7446 6 1 3.5695 1.4275 0.6547 7 6 2.0102 -1.2022 0.0005 8 1 1.4980 -2.1214 0.2441 9 7 3.3442 -1.2228 -0.3078 10 6 4.3042 -1.8080 0.6314 11 6 4.4725 -3.2978 0.3265 12 1 3.4973 -3.7843 0.3423 13 8 5.0630 -3.4560 -0.9651 14 6 5.3641 -3.9258 1.3667 15 6 4.8086 -4.6402 2.4120 16 6 5.6244 -5.2219 3.3639 17 6 6.9990 -5.0892 3.2718 18 9 7.7972 -5.6580 4.2016 19 6 7.5561 -4.3728 2.2235 20 9 8.8976 -4.2415 2.1317 21 6 6.7364 -3.7918 1.2716 22 6 3.8114 -0.6595 -1.5770 23 6 2.7702 0.0012 -2.4826 24 6 3.3663 -1.3550 -2.8650 25 1 -0.4850 0.8400 0.0004 26 1 3.9370 -1.6848 1.6502 27 1 5.2658 -1.3052 0.5285 28 1 5.9348 -3.0467 -1.0519 29 1 3.7360 -4.7436 2.4848 30 1 5.1893 -5.7794 4.1802 31 1 7.1690 -3.2337 0.4544 32 1 4.8112 -0.2255 -1.5590 33 1 1.7374 0.0164 -2.1343 34 1 3.0847 0.8702 -3.0605 35 1 4.0730 -1.3783 -3.6945 36 1 2.7262 -2.2319 -2.7681 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749440672.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:23 Heat of formation + Delta-G solvation = -59.932376 kcal Electronic energy + Delta-G solvation = -22260.632352 eV Core-core repulsion = 18575.727008 eV Total energy + Delta-G solvation = -3684.905345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.54137 -48.61984 -39.57729 -37.50789 -36.16607 -32.97221 -31.88017 -31.04000 -30.76388 -27.32382 -24.59912 -23.33735 -22.72415 -21.49764 -21.13818 -19.86905 -18.21989 -17.33971 -17.17972 -16.87073 -16.38134 -16.11321 -15.18995 -15.03847 -14.74713 -14.55103 -14.46577 -14.36824 -14.01900 -13.47778 -13.09527 -12.89247 -12.72992 -12.29028 -11.89555 -11.75237 -11.46621 -11.24993 -10.82103 -10.68514 -10.56886 -10.38417 -9.99727 -9.76099 -9.49982 -9.18223 -9.12036 -8.70950 -8.44392 -6.48665 -6.07877 -3.78699 0.81737 0.89377 3.25478 3.35147 3.44072 3.50171 3.67741 4.21852 4.40617 4.46874 4.51103 4.75796 4.86708 4.91778 4.99863 5.10987 5.27708 5.54650 5.60951 5.73481 5.77284 5.80829 5.87840 5.93932 6.07754 6.17217 6.18870 6.49321 6.55118 6.58994 6.61938 6.66735 7.09153 7.33323 7.94515 8.03422 8.42815 8.93392 9.56154 10.05762 11.01083 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.025257 B = 0.004535 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.351928 B = 6173.127438 C = 6511.250130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.886 3.114 4 H -0.269 1.269 5 H -0.305 1.305 6 H -0.272 1.272 7 C -0.288 4.288 8 H 0.070 0.930 9 N -0.564 5.564 10 C 0.128 3.872 11 C 0.123 3.877 12 H 0.115 0.885 13 O -0.540 6.540 14 C -0.080 4.080 15 C -0.090 4.090 16 C -0.122 4.122 17 C 0.054 3.946 18 F -0.134 7.134 19 C 0.068 3.932 20 F -0.132 7.132 21 C -0.123 4.123 22 C 0.113 3.887 23 C -0.204 4.204 24 C -0.197 4.197 25 H 0.266 0.734 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.361 0.639 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.385 -7.103 3.307 14.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.715 3.285 4 H -0.195 1.195 5 H -0.232 1.232 6 H -0.197 1.197 7 C -0.417 4.417 8 H 0.087 0.913 9 N -0.282 5.282 10 C 0.001 3.999 11 C 0.061 3.939 12 H 0.132 0.868 13 O -0.344 6.344 14 C -0.082 4.082 15 C -0.108 4.108 16 C -0.141 4.141 17 C 0.034 3.966 18 F -0.112 7.112 19 C 0.048 3.952 20 F -0.111 7.111 21 C -0.142 4.142 22 C 0.006 3.994 23 C -0.242 4.242 24 C -0.237 4.237 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.207 0.793 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.160 0.840 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.721 -7.316 3.256 14.195 hybrid contribution 1.287 1.114 0.303 1.729 sum 13.008 -6.202 3.559 14.843 Atomic orbital electron populations 1.69859 1.06309 1.27217 1.50035 1.25850 0.94967 0.98641 0.94956 0.86778 0.80070 0.83413 0.78275 1.19516 1.23247 1.19674 1.18513 0.82959 0.93301 1.46929 0.91268 1.43394 1.03828 1.67907 1.13112 1.21572 0.93388 0.89995 0.94966 1.21855 0.94195 0.98210 0.79607 0.86753 1.86705 1.36356 1.79716 1.31581 1.20927 0.93658 0.96145 0.97440 1.21069 1.00983 0.95741 0.93014 1.21089 0.90403 1.01569 1.01048 1.17673 0.89239 1.00355 0.89300 1.91505 1.73387 1.82844 1.63507 1.17621 0.77813 1.02494 0.97241 1.91515 1.29168 1.94399 1.96000 1.20812 0.93230 1.01174 0.98969 1.21207 0.94608 0.99807 0.83792 1.23540 1.01818 0.94884 1.03973 1.23221 1.04159 0.96279 1.00064 0.92458 0.91321 0.94067 0.79310 0.83747 0.83724 0.83973 0.89960 0.86381 0.90926 0.91313 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.81 13.97 55.49 0.78 -25.03 16 2 C 0.06 1.59 3.75 -17.43 -0.07 1.52 16 3 Si 0.89 21.35 24.86 -169.99 -4.23 17.13 16 4 H -0.27 -6.24 5.80 56.52 0.33 -5.92 16 5 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.29 -7.46 9.17 -15.06 -0.14 -7.60 16 8 H 0.07 1.97 8.06 -52.48 -0.42 1.54 16 9 N -0.56 -12.22 2.01 -165.66 -0.33 -12.55 16 10 C 0.13 2.24 5.35 -4.04 -0.02 2.22 16 11 C 0.12 1.85 3.45 -27.88 -0.10 1.75 16 12 H 0.11 1.93 8.00 -51.93 -0.42 1.52 16 13 O -0.54 -8.14 12.74 -35.23 -0.45 -8.59 16 14 C -0.08 -1.01 4.97 -104.62 -0.52 -1.53 16 15 C -0.09 -1.02 9.66 -39.58 -0.38 -1.41 16 16 C -0.12 -1.31 10.02 -39.53 -0.40 -1.71 16 17 C 0.05 0.67 7.31 -39.37 -0.29 0.38 16 18 F -0.13 -1.73 17.18 2.25 0.04 -1.70 16 19 C 0.07 0.86 7.31 -39.37 -0.29 0.58 16 20 F -0.13 -1.76 17.18 2.25 0.04 -1.72 16 21 C -0.12 -1.45 9.30 -39.53 -0.37 -1.82 16 22 C 0.11 2.30 4.76 -67.93 -0.32 1.98 16 23 C -0.20 -4.38 6.68 -26.73 -0.18 -4.56 16 24 C -0.20 -3.85 10.36 -26.73 -0.28 -4.13 16 25 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 26 H 0.07 1.24 8.04 -51.93 -0.42 0.83 16 27 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 28 H 0.36 4.19 7.50 45.56 0.34 4.53 16 29 H 0.14 1.47 8.04 -52.49 -0.42 1.04 16 30 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.14 1.40 6.78 -52.49 -0.36 1.05 16 32 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.12 2.95 5.08 -51.93 -0.26 2.69 16 34 H 0.07 1.43 7.86 -51.93 -0.41 1.02 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 LS Contribution 308.26 15.07 4.65 4.65 Total: -1.00 -29.21 308.26 -6.53 -35.74 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -3.68 Total: 6.39 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -3.34 Total: -14.31 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.44 Total: -37.59 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.45 Total: -8.59 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.08 Total: -3.41 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.23 Total: 17.13 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.21 -6.53 -35.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749440672.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.193 kcal (2) G-P(sol) polarization free energy of solvation -29.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds