Wall clock time and date at job start Tue Mar 31 2020 06:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31790 * 119.07821 * 2 1 4 4 C 1.32659 * 120.98932 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 120.41623 * 179.97438 * 4 3 2 6 6 C 1.38319 * 119.16423 * 0.02562 * 4 3 2 7 7 C 1.39520 * 118.32300 * 359.97438 * 6 4 3 8 8 N 1.38563 * 120.52138 * 180.02562 * 7 6 4 9 9 C 1.46499 * 119.99921 * 359.97438 * 8 7 6 10 10 C 1.53000 * 109.46840 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47233 * 299.99500 * 10 9 8 12 12 C 1.52996 * 109.47328 * 59.99969 * 10 9 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 10 9 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 10 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 10 17 17 N 1.31519 * 119.99563 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47116 * 59.99479 * 18 16 14 20 20 H 1.48490 * 109.47381 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46756 * 300.00079 * 18 16 14 22 22 N 1.31739 * 119.07811 * 180.29971 * 2 1 3 23 23 H 1.09001 * 109.47189 * 89.99914 * 1 2 3 24 24 H 1.09001 * 109.47297 * 209.99999 * 1 2 3 25 25 H 1.09004 * 109.47377 * 330.00269 * 1 2 3 26 26 H 1.07998 * 120.83607 * 180.02562 * 6 4 3 27 27 H 0.97000 * 119.99658 * 179.97438 * 8 7 6 28 28 H 1.09002 * 109.47391 * 59.99941 * 9 8 7 29 29 H 1.09001 * 109.46813 * 299.99998 * 9 8 7 30 30 H 1.09000 * 109.46986 * 60.00203 * 11 10 9 31 31 H 1.08993 * 109.47662 * 180.02562 * 11 10 9 32 32 H 1.09002 * 109.47075 * 300.00932 * 11 10 9 33 33 H 1.08992 * 109.47554 * 59.99639 * 12 10 9 34 34 H 1.09004 * 109.47108 * 179.97438 * 12 10 9 35 35 H 1.09000 * 109.46870 * 299.99783 * 12 10 9 36 36 H 1.09001 * 109.47109 * 299.99380 * 13 10 9 37 37 H 1.09002 * 109.47508 * 59.99571 * 13 10 9 38 38 H 0.97000 * 119.99425 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1474 1.1518 0.0000 4 6 3.4733 1.1960 -0.0005 5 17 4.3018 2.7216 -0.0012 6 6 4.1872 0.0113 -0.0016 7 6 3.4770 -1.1896 -0.0015 8 7 4.1462 -2.4029 -0.0021 9 6 5.6109 -2.4316 -0.0032 10 6 6.0924 -3.8838 -0.0042 11 6 5.5695 -4.5955 1.2452 12 6 5.5674 -4.5944 -1.2533 13 6 7.6222 -3.9138 -0.0048 14 6 8.0966 -5.3441 -0.0052 15 1 7.3788 -6.1512 -0.0046 16 6 9.4469 -5.6227 -0.0062 17 7 10.3210 -4.6399 -0.0075 18 14 10.0350 -7.3957 -0.0074 19 1 9.5254 -8.0854 -1.2198 20 1 11.5196 -7.4248 -0.0079 21 1 9.5272 -8.0863 1.2052 22 7 2.1472 -1.1513 -0.0060 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 5.2672 0.0158 -0.0016 27 1 3.6447 -3.2332 -0.0017 28 1 5.9850 -1.9250 0.8864 29 1 5.9834 -1.9250 -0.8935 30 1 4.4797 -4.5741 1.2461 31 1 5.9129 -5.6299 1.2447 32 1 5.9435 -4.0891 2.1350 33 1 5.9400 -4.0875 -2.1434 34 1 5.9109 -5.6289 -1.2542 35 1 4.4776 -4.5730 -1.2524 36 1 7.9952 -3.4068 -0.8947 37 1 7.9959 -3.4076 0.8853 38 1 11.2710 -4.8359 -0.0086 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808092641.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:24 Heat of formation + Delta-G solvation = 21.441054 kcal Electronic energy + Delta-G solvation = -19708.762731 eV Core-core repulsion = 16611.475435 eV Total energy + Delta-G solvation = -3097.287297 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.04156 -38.13510 -36.93478 -35.24433 -33.17812 -32.59154 -31.23760 -28.54874 -27.18381 -26.61482 -26.30607 -23.78202 -23.24128 -21.75638 -18.91818 -17.63410 -17.55350 -16.38977 -15.61207 -15.42312 -15.07481 -14.60988 -14.49990 -14.42433 -13.59937 -13.18164 -13.17744 -12.88888 -12.88232 -12.57120 -12.13643 -12.07274 -11.52780 -11.37585 -11.08467 -10.94404 -10.83687 -10.80746 -10.67945 -10.50889 -10.35302 -9.97836 -9.60377 -9.40636 -9.32854 -9.05402 -8.43476 -8.14996 -6.08029 -4.09583 0.82827 1.22816 1.56838 3.00396 3.27434 3.33130 3.34613 3.68419 3.98366 4.38723 4.49613 4.76719 5.12024 5.23437 5.27333 5.32499 5.38462 5.40502 5.52558 5.60736 5.65191 5.91842 6.01314 6.08187 6.14598 6.24006 6.49799 6.52989 6.64331 6.92279 6.96136 6.97897 7.16304 7.51098 7.54612 7.62941 7.89667 8.13658 8.31199 8.94480 9.54200 11.03358 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.026334 B = 0.003485 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.004584 B = 8031.944906 C = 8893.277347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.376 3.624 3 N -0.567 5.567 4 C 0.254 3.746 5 Cl -0.023 7.023 6 C -0.284 4.284 7 C 0.456 3.544 8 N -0.690 5.690 9 C 0.125 3.875 10 C -0.070 4.070 11 C -0.129 4.129 12 C -0.129 4.129 13 C 0.037 3.963 14 C -0.514 4.514 15 H 0.059 0.941 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 N -0.580 5.580 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.153 0.847 27 H 0.411 0.589 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.282 9.113 0.024 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.107 3.893 3 N -0.290 5.290 4 C 0.085 3.915 5 Cl 0.005 6.995 6 C -0.313 4.313 7 C 0.210 3.790 8 N -0.321 5.321 9 C 0.002 3.998 10 C -0.071 4.071 11 C -0.186 4.186 12 C -0.186 4.186 13 C 0.000 4.000 14 C -0.552 4.552 15 H 0.077 0.923 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 N -0.307 5.307 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.171 0.829 27 H 0.249 0.751 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.703 9.259 0.018 18.230 hybrid contribution 1.437 -1.060 -0.016 1.786 sum -14.266 8.199 0.002 16.454 Atomic orbital electron populations 1.20564 0.85381 1.04169 1.03953 1.22793 0.97429 0.81492 0.87540 1.67606 1.08005 1.30777 1.22661 1.21535 0.89719 0.87431 0.92820 1.98416 1.75376 1.29634 1.96051 1.21848 1.02865 0.90692 1.15944 1.18481 0.87715 0.86941 0.85906 1.44979 1.07299 1.04348 1.75448 1.21921 0.76218 1.00082 1.01563 1.20901 1.00406 0.90296 0.95450 1.21776 0.97583 1.02198 0.97048 1.21774 0.97582 1.02200 0.97048 1.19092 0.85740 0.97691 0.97495 1.21119 0.91389 0.92019 1.50694 0.92265 1.24999 0.97057 0.96924 0.95384 1.69944 1.01667 1.31153 1.50605 0.86698 0.77631 0.85329 0.78595 1.20273 1.21346 1.20279 1.67819 1.07620 1.30817 1.24411 0.89497 0.89481 0.89504 0.82932 0.75125 0.91465 0.91475 0.95071 0.91216 0.93286 0.93289 0.91217 0.95064 0.96277 0.96278 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.32 36.00 0.37 -0.35 16 2 C 0.38 4.92 7.64 -157.25 -1.20 3.72 16 3 N -0.57 -7.97 10.33 -7.94 -0.08 -8.05 16 4 C 0.25 3.51 7.33 -17.16 -0.13 3.39 16 5 Cl -0.02 -0.28 29.15 -51.86 -1.51 -1.79 16 6 C -0.28 -3.93 9.20 -39.07 -0.36 -4.29 16 7 C 0.46 6.56 7.71 -154.76 -1.19 5.37 16 8 N -0.69 -9.58 5.11 -60.28 -0.31 -9.88 16 9 C 0.13 1.89 3.82 -4.04 -0.02 1.87 16 10 C -0.07 -1.23 0.54 -154.51 -0.08 -1.31 16 11 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 12 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 13 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 14 C -0.51 -13.11 7.65 -34.44 -0.26 -13.38 16 15 H 0.06 1.46 5.68 -52.48 -0.30 1.16 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.89 -25.52 13.29 55.43 0.74 -24.79 16 18 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 N -0.58 -8.25 10.37 -9.98 -0.10 -8.36 16 23 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.15 1.96 6.86 -52.49 -0.36 1.60 16 27 H 0.41 5.51 6.29 -40.82 -0.26 5.25 16 28 H 0.07 1.01 7.97 -51.93 -0.41 0.60 16 29 H 0.07 1.01 7.97 -51.93 -0.41 0.60 16 30 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 31 H 0.07 1.27 6.61 -51.93 -0.34 0.93 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 35 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 325.93 15.07 4.91 4.91 Total: -1.00 -28.26 325.93 -9.10 -37.36 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.24 Total: 1.44 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -2.48 Total: -6.49 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.24 Total: -51.07 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.51 Total: -1.79 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.26 -9.10 -37.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808092641.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.797 kcal (2) G-P(sol) polarization free energy of solvation -28.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds