Wall clock time and date at job start Tue Mar 31 2020 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.46946 * 2 1 4 4 N 1.30008 * 127.33670 * 270.15978 * 3 2 1 5 5 O 1.20652 * 112.32070 * 180.33133 * 4 3 2 6 6 C 1.33468 * 113.17676 * 359.68560 * 5 4 3 7 7 C 1.50701 * 126.83685 * 180.02562 * 6 5 4 8 8 C 1.37441 * 106.32780 * 0.02562 * 6 5 4 9 9 C 1.47255 * 128.57449 * 180.02562 * 8 6 5 10 10 O 1.21533 * 120.00229 * 90.02285 * 9 8 6 11 11 O 1.34763 * 119.99949 * 269.74411 * 9 8 6 12 12 C 1.45196 * 117.00315 * 180.27181 * 11 9 8 13 13 C 1.52994 * 109.47253 * 180.02562 * 12 11 9 14 14 O 1.42904 * 109.46973 * 65.00472 * 13 12 11 15 15 C 1.42904 * 113.99784 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47162 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99954 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00167 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99840 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00064 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47378 * 89.99923 * 20 18 16 22 22 H 1.48507 * 109.46949 * 209.99708 * 20 18 16 23 23 H 1.48496 * 109.47117 * 329.99579 * 20 18 16 24 24 H 1.09004 * 109.46877 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47019 * 299.99924 * 1 2 3 26 26 H 1.08998 * 109.47486 * 60.00280 * 1 2 3 27 27 H 1.08997 * 109.47309 * 239.99665 * 2 1 3 28 28 H 1.08998 * 109.47486 * 119.99720 * 2 1 3 29 29 H 1.09001 * 109.47133 * 269.97584 * 7 6 5 30 30 H 1.08996 * 109.47435 * 29.97202 * 7 6 5 31 31 H 1.09003 * 109.47124 * 149.97718 * 7 6 5 32 32 H 1.08998 * 109.47461 * 300.00597 * 12 11 9 33 33 H 1.09010 * 109.46796 * 60.00387 * 12 11 9 34 34 H 1.09001 * 109.47094 * 185.00650 * 13 12 11 35 35 H 1.09002 * 109.47283 * 305.00558 * 13 12 11 36 36 H 1.08992 * 109.47429 * 300.00489 * 15 14 13 37 37 H 1.09001 * 109.46591 * 60.00303 * 15 14 13 38 38 H 0.97004 * 120.00063 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2923 2.1652 -1.0337 5 8 2.6877 3.2614 -0.7211 6 6 2.7531 3.4393 0.6001 7 6 3.2015 4.6831 1.3232 8 6 2.3302 2.2622 1.1698 9 6 2.2099 1.9246 2.5981 10 8 1.1696 2.1411 3.1881 11 8 3.2513 1.3705 3.2496 12 6 3.0594 1.0586 4.6546 13 6 4.3404 0.4418 5.2197 14 8 5.3901 1.4111 5.1876 15 6 6.6372 0.9342 5.6969 16 6 7.6661 2.0323 5.6151 17 1 7.3946 2.9979 5.2146 18 6 8.9536 1.8046 6.0523 19 7 9.8513 2.7631 5.9813 20 14 9.4230 0.1348 6.7456 21 1 9.9067 -0.7393 5.6469 22 1 10.4994 0.3027 7.7549 23 1 8.2362 -0.4865 7.3865 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 4.2765 4.6349 1.4968 30 1 2.9704 5.5590 0.7171 31 1 2.6820 4.7551 2.2787 32 1 2.8247 1.9721 5.2009 33 1 2.2374 0.3505 4.7606 34 1 4.1685 0.1263 6.2487 35 1 4.6244 -0.4213 4.6176 36 1 6.5127 0.6292 6.7358 37 1 6.9690 0.0812 5.1050 38 1 10.7573 2.6028 6.2887 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815181408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:19 Heat of formation + Delta-G solvation = -80.427393 kcal Electronic energy + Delta-G solvation = -21959.740567 eV Core-core repulsion = 18385.034008 eV Total energy + Delta-G solvation = -3574.706560 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.08701 -40.31359 -37.31581 -36.20948 -35.57609 -33.87956 -32.73921 -31.63151 -30.44607 -28.34617 -27.63156 -25.55824 -24.32289 -22.46644 -21.92099 -21.14986 -20.10207 -18.35439 -17.87118 -17.27198 -16.96519 -16.48186 -16.22921 -15.42248 -14.98290 -14.72434 -14.63838 -14.39218 -13.71976 -13.57877 -13.45339 -13.05642 -13.02454 -12.79230 -12.61344 -12.51313 -11.90287 -11.80376 -11.78691 -11.27876 -11.15081 -10.99066 -10.79148 -10.65178 -10.59609 -10.19477 -9.91870 -9.60548 -9.25979 -8.96718 -8.55924 -6.16383 -4.16005 1.06661 1.65004 1.85297 2.41062 2.94354 3.21106 3.28241 3.28573 3.80394 3.98769 4.30662 4.38476 4.60413 4.65870 4.81757 4.92360 5.01468 5.03656 5.11031 5.14844 5.24468 5.27471 5.32327 5.52933 5.57584 5.60409 5.68439 5.72482 5.74430 5.86231 5.89813 6.31119 6.50210 6.91431 7.52368 7.59656 7.89336 7.99433 8.57981 8.94169 9.42235 10.96547 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.003644 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.455329 B = 7682.767849 C = 8168.133251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.049 4.049 3 C 0.067 3.933 4 N -0.352 5.352 5 O 0.099 5.901 6 C 0.042 3.958 7 C -0.086 4.086 8 C -0.239 4.239 9 C 0.553 3.447 10 O -0.495 6.495 11 O -0.329 6.329 12 C 0.072 3.928 13 C 0.057 3.943 14 O -0.376 6.376 15 C 0.168 3.832 16 C -0.521 4.521 17 H 0.083 0.917 18 C 0.073 3.927 19 N -0.894 5.894 20 Si 0.876 3.124 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.266 1.266 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.005 0.995 37 H 0.001 0.999 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.532 -3.638 -9.693 20.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.095 4.095 4 N -0.059 5.059 5 O 0.038 5.962 6 C -0.021 4.021 7 C -0.143 4.143 8 C -0.244 4.244 9 C 0.395 3.605 10 O -0.383 6.383 11 O -0.244 6.244 12 C -0.001 4.001 13 C -0.020 4.020 14 O -0.295 6.295 15 C 0.093 3.907 16 C -0.559 4.559 17 H 0.101 0.899 18 C -0.129 4.129 19 N -0.532 5.532 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.191 1.191 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.022 0.978 37 H 0.018 0.982 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.700 -3.506 -10.818 21.038 hybrid contribution 0.393 -1.231 1.419 1.919 sum -17.307 -4.737 -9.399 20.256 Atomic orbital electron populations 1.21748 0.93401 1.02650 1.02802 1.20045 0.96810 0.87343 1.04532 1.24679 1.00265 0.98545 0.86030 1.73594 1.16558 0.92639 1.23096 1.84543 1.62396 1.26913 1.22313 1.24698 0.96178 0.97624 0.83642 1.20609 1.04035 0.90398 0.99239 1.20868 1.15120 0.96038 0.92409 1.19546 0.81504 0.74082 0.85372 1.90868 1.29443 1.49884 1.68130 1.86760 1.39870 1.71641 1.26167 1.23297 0.98022 1.01661 0.77128 1.22406 0.87919 0.92810 0.98914 1.87971 1.19718 1.36758 1.85062 1.20641 0.81469 0.96146 0.92408 1.20862 0.92917 0.99557 1.42522 0.89916 1.24761 0.95903 0.96979 0.95261 1.69870 1.03779 1.32489 1.47085 0.86851 0.78783 0.84590 0.79525 1.19873 1.20720 1.19109 0.91263 0.91959 0.92195 0.89108 0.89271 0.87442 0.88759 0.88611 0.89978 0.89976 0.91540 0.92953 0.97782 0.98164 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.89 37.16 0.37 -0.91 16 2 C -0.05 -0.49 6.55 -27.88 -0.18 -0.67 16 3 C 0.07 0.87 6.84 -79.75 -0.55 0.32 16 4 N -0.35 -4.73 12.01 34.79 0.42 -4.32 16 5 O 0.10 1.25 11.06 18.72 0.21 1.45 16 6 C 0.04 0.51 7.55 -34.60 -0.26 0.25 16 7 C -0.09 -0.78 10.33 36.01 0.37 -0.41 16 8 C -0.24 -3.31 6.37 -102.91 -0.66 -3.97 16 9 C 0.55 8.36 7.74 34.39 0.27 8.62 16 10 O -0.50 -8.06 16.90 -19.29 -0.33 -8.38 16 11 O -0.33 -5.32 10.20 -43.45 -0.44 -5.76 16 12 C 0.07 1.05 5.85 37.15 0.22 1.26 16 13 C 0.06 0.94 6.33 37.15 0.24 1.17 16 14 O -0.38 -8.50 10.30 -38.80 -0.40 -8.90 16 15 C 0.17 4.17 4.76 36.00 0.17 4.34 16 16 C -0.52 -15.23 9.99 -34.44 -0.34 -15.57 16 17 H 0.08 2.64 8.06 -52.48 -0.42 2.22 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 19 N -0.89 -27.18 13.96 55.43 0.77 -26.41 16 20 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.89 8.11 -51.93 -0.42 0.47 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.08 0.95 8.14 -51.92 -0.42 0.52 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.00 0.11 7.20 -51.93 -0.37 -0.27 16 37 H 0.00 0.02 7.57 -51.93 -0.39 -0.38 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 339.12 15.07 5.11 5.11 Total: -1.00 -33.88 339.12 -5.21 -39.09 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -5.43 Total: -4.62 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -0.46 Total: -3.55 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 1.19 Total: -30.72 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.96 Total: -21.59 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.88 -5.21 -39.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815181408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.336 kcal (2) G-P(sol) polarization free energy of solvation -33.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds