Wall clock time and date at job start Tue Mar 31 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50690 * 109.47020 * 2 1 4 4 N 1.30639 * 125.41391 * 90.00044 * 3 2 1 5 5 C 1.33654 * 109.01094 * 179.97438 * 4 3 2 6 6 C 1.50696 * 126.27850 * 180.02562 * 5 4 3 7 7 C 1.36437 * 107.44125 * 0.02562 * 5 4 3 8 8 C 1.46538 * 126.64990 * 179.97438 * 7 5 4 9 9 O 1.21609 * 120.00020 * 0.02562 * 8 7 5 10 10 O 1.34890 * 119.99494 * 179.97438 * 8 7 5 11 11 C 1.45196 * 116.99402 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47027 * 180.02562 * 11 10 8 13 13 O 1.42898 * 109.47212 * 64.99646 * 12 11 10 14 14 C 1.42902 * 114.00080 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47338 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99726 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00035 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00171 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99699 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47084 * 60.00151 * 19 17 15 21 21 H 1.48504 * 109.47052 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47223 * 299.99681 * 19 17 15 23 23 O 1.33651 * 125.42025 * 270.00176 * 3 2 1 24 24 H 1.08994 * 109.47063 * 60.00302 * 1 2 3 25 25 H 1.09002 * 109.46915 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47016 * 299.99483 * 1 2 3 27 27 H 1.09007 * 109.46603 * 240.00150 * 2 1 3 28 28 H 1.08997 * 109.47301 * 120.00614 * 2 1 3 29 29 H 1.09002 * 109.47057 * 89.98060 * 6 5 4 30 30 H 1.08998 * 109.47333 * 209.97836 * 6 5 4 31 31 H 1.08999 * 109.47412 * 329.97945 * 6 5 4 32 32 H 1.08996 * 109.47510 * 300.00075 * 11 10 8 33 33 H 1.09000 * 109.47695 * 60.00437 * 11 10 8 34 34 H 1.08999 * 109.47632 * 185.00154 * 12 11 10 35 35 H 1.09003 * 109.46860 * 305.00094 * 12 11 10 36 36 H 1.09003 * 109.47325 * 300.00597 * 14 13 12 37 37 H 1.09002 * 109.46926 * 60.00110 * 14 13 12 38 38 H 0.96992 * 120.00245 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2847 2.1345 1.0647 5 6 2.7126 3.3431 0.6873 6 6 3.1127 4.4728 1.6008 7 6 2.7206 3.3665 -0.6769 8 6 3.1176 4.4897 -1.5302 9 8 3.4873 5.5338 -1.0280 10 8 3.0739 4.3652 -2.8726 11 6 3.4820 5.5181 -3.6551 12 6 3.3657 5.1903 -5.1450 13 8 1.9934 4.9730 -5.4793 14 6 1.7733 4.6576 -6.8556 15 6 0.2998 4.4504 -7.0941 16 1 -0.3986 4.5494 -6.2763 17 6 -0.1565 4.1336 -8.3560 18 7 0.6942 4.0127 -9.3517 19 14 -1.9829 3.8762 -8.6514 20 1 -2.7202 5.1177 -8.3045 21 1 -2.2116 3.5485 -10.0816 22 1 -2.4688 2.7584 -7.8031 23 8 2.2905 2.1510 -1.0892 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 4.1779 4.4019 1.8212 30 1 2.9052 5.4253 1.1133 31 1 2.5447 4.4082 2.5289 32 1 2.8374 6.3646 -3.4183 33 1 4.5154 5.7709 -3.4180 34 1 3.7552 6.0223 -5.7317 35 1 3.9401 4.2904 -5.3649 36 1 2.1300 5.4783 -7.4780 37 1 2.3146 3.7465 -7.1105 38 1 0.3732 3.7902 -10.2395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815251222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:55 Heat of formation + Delta-G solvation = -121.627617 kcal Electronic energy + Delta-G solvation = -21681.166834 eV Core-core repulsion = 18104.673698 eV Total energy + Delta-G solvation = -3576.493136 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.68946 -40.24052 -37.20321 -36.24927 -35.43529 -34.53074 -32.79134 -31.17735 -30.23594 -28.18386 -26.92555 -25.31890 -23.14567 -22.38236 -21.80025 -21.71577 -20.85058 -18.40200 -17.34342 -17.04243 -16.42753 -16.36084 -16.04166 -15.33425 -15.05376 -14.67256 -14.39629 -14.31678 -13.77055 -13.56476 -13.34950 -13.10461 -12.88216 -12.77040 -12.51363 -12.05767 -11.99484 -11.57342 -11.47808 -11.22374 -11.16986 -10.99762 -10.88236 -10.80563 -10.58495 -10.47461 -10.07577 -9.16341 -9.10536 -8.89793 -8.23478 -6.13292 -4.15131 0.46618 2.00349 2.07655 2.67371 2.78248 3.31125 3.33584 3.37674 3.55573 4.30442 4.37185 4.49721 4.68359 4.73172 4.76133 4.93030 5.12858 5.22623 5.23222 5.28127 5.39132 5.40466 5.43913 5.51147 5.64658 5.67911 5.80596 5.84761 5.87704 5.98308 6.04963 6.35400 7.02822 7.27772 7.37694 7.60759 7.76304 8.10592 8.49924 8.96927 9.49589 10.98272 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015078 B = 0.003811 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.562336 B = 7345.808634 C = 8745.983093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.032 4.032 3 C 0.234 3.766 4 N -0.491 5.491 5 C 0.094 3.906 6 C -0.083 4.083 7 C -0.101 4.101 8 C 0.558 3.442 9 O -0.489 6.489 10 O -0.328 6.328 11 C 0.075 3.925 12 C 0.061 3.939 13 O -0.391 6.391 14 C 0.195 3.805 15 C -0.516 4.516 16 H 0.066 0.934 17 C 0.057 3.943 18 N -0.899 5.899 19 Si 0.909 3.091 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 O -0.168 6.168 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.506 -4.883 19.741 21.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.070 4.070 3 C 0.029 3.971 4 N -0.221 5.221 5 C -0.031 4.031 6 C -0.140 4.140 7 C -0.155 4.155 8 C 0.402 3.598 9 O -0.380 6.380 10 O -0.243 6.243 11 C 0.001 3.999 12 C -0.017 4.017 13 O -0.311 6.311 14 C 0.121 3.879 15 C -0.554 4.554 16 H 0.084 0.916 17 C -0.144 4.144 18 N -0.538 5.538 19 Si 0.736 3.264 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 O -0.053 6.053 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.119 0.881 28 H 0.129 0.871 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.388 -4.835 20.293 21.546 hybrid contribution -0.511 0.157 -1.321 1.425 sum 4.877 -4.679 18.972 20.140 Atomic orbital electron populations 1.21810 0.92381 1.03463 1.03440 1.20263 0.97431 0.83515 1.05817 1.26729 0.95182 0.96677 0.78551 1.70393 1.18524 1.03355 1.29843 1.22114 0.96248 0.94121 0.90592 1.20441 1.02227 0.93732 0.97592 1.21612 1.14460 0.86029 0.93383 1.18888 0.74792 0.84317 0.81790 1.90893 1.44586 1.27065 1.75435 1.86767 1.77880 1.42981 1.16714 1.23360 1.00276 0.86362 0.89878 1.22332 0.87901 1.00431 0.91005 1.87923 1.20860 1.91127 1.31214 1.20241 0.97406 0.94507 0.75786 1.21009 0.91669 1.47831 0.94932 0.91580 1.24939 0.98748 0.95198 0.95520 1.69945 1.34484 1.48382 1.00994 0.86384 0.84104 0.78893 0.77037 1.19986 1.21102 1.19978 1.84590 1.62497 1.21552 1.36681 0.91518 0.90442 0.91662 0.88065 0.87132 0.89686 0.88585 0.90056 0.90009 0.89932 0.91585 0.93092 0.97543 0.97470 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.90 37.16 0.37 -0.75 16 2 C -0.03 -0.25 6.56 -27.88 -0.18 -0.43 16 3 C 0.23 2.85 7.57 -12.79 -0.10 2.75 16 4 N -0.49 -6.42 11.25 -7.06 -0.08 -6.50 16 5 C 0.09 1.26 7.16 -82.45 -0.59 0.67 16 6 C -0.08 -0.86 9.87 36.00 0.36 -0.51 16 7 C -0.10 -1.55 7.25 -36.89 -0.27 -1.82 16 8 C 0.56 9.06 7.93 34.08 0.27 9.33 16 9 O -0.49 -7.86 14.59 -19.35 -0.28 -8.14 16 10 O -0.33 -5.85 10.20 -44.53 -0.45 -6.31 16 11 C 0.07 1.18 5.86 37.16 0.22 1.40 16 12 C 0.06 1.12 6.33 37.16 0.24 1.35 16 13 O -0.39 -9.60 10.30 -38.80 -0.40 -10.00 16 14 C 0.19 5.36 5.69 36.01 0.20 5.57 16 15 C -0.52 -15.34 9.43 -34.44 -0.32 -15.67 16 16 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 19 Si 0.91 21.89 29.54 -169.99 -5.02 16.87 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 O -0.17 -2.53 10.79 4.39 0.05 -2.48 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.10 0.65 8.14 -51.92 -0.42 0.22 16 28 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.10 1.06 6.47 -51.93 -0.34 0.72 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 338.72 15.07 5.10 5.10 Total: -1.00 -34.17 338.72 -5.63 -39.81 By element: Atomic # 1 Polarization: -0.30 SS G_CDS: -5.38 Total: -5.67 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 0.09 Total: 3.46 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.66 Total: -32.63 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -1.09 Total: -26.93 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.17 -5.63 -39.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815251222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.822 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds