Wall clock time and date at job start Tue Mar 31 2020 06:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47128 * 2 1 4 4 C 1.53004 * 109.46789 * 240.00229 * 2 1 3 5 5 S 1.81394 * 109.47244 * 120.00337 * 2 1 3 6 6 C 1.76206 * 103.00239 * 54.82589 * 5 2 1 7 7 C 1.38838 * 120.01042 * 258.60069 * 6 5 2 8 8 C 1.38122 * 120.01743 * 180.27372 * 7 6 5 9 9 C 1.38871 * 120.04029 * 359.97438 * 8 7 6 10 10 N 1.39989 * 119.98812 * 180.02562 * 9 8 7 11 11 C 1.46500 * 119.99907 * 359.97438 * 10 9 8 12 12 C 1.50703 * 109.46733 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00516 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99875 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00065 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00246 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46943 * 90.00003 * 16 14 12 18 18 H 1.48497 * 109.47192 * 210.00059 * 16 14 12 19 19 H 1.48502 * 109.47012 * 330.00357 * 16 14 12 20 20 C 1.38869 * 120.02433 * 0.02562 * 9 8 7 21 21 C 1.38244 * 119.97996 * 359.97438 * 20 9 8 22 22 F 1.35106 * 120.02000 * 179.97438 * 21 20 9 23 23 H 1.08993 * 109.47122 * 302.21157 * 1 2 3 24 24 H 1.09000 * 109.47103 * 62.21874 * 1 2 3 25 25 H 1.09002 * 109.46958 * 182.21305 * 1 2 3 26 26 H 1.08996 * 109.47137 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.46934 * 300.00124 * 3 2 1 28 28 H 1.08996 * 109.46563 * 60.00157 * 3 2 1 29 29 H 1.09001 * 109.47493 * 305.96162 * 4 2 1 30 30 H 1.08998 * 109.47415 * 65.96694 * 4 2 1 31 31 H 1.09003 * 109.46650 * 185.96353 * 4 2 1 32 32 H 1.07998 * 119.99456 * 0.25397 * 7 6 5 33 33 H 1.07995 * 119.97775 * 180.02562 * 8 7 6 34 34 H 0.96998 * 119.99850 * 179.97438 * 10 9 8 35 35 H 1.08993 * 109.47431 * 299.99848 * 11 10 9 36 36 H 1.09002 * 109.46928 * 60.00645 * 11 10 9 37 37 H 0.97000 * 120.00727 * 179.97438 * 15 14 12 38 38 H 1.07999 * 120.01186 * 180.02562 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 16 2.1347 -0.8552 1.4810 6 6 1.3344 -2.4223 1.3885 7 6 0.2170 -2.6787 2.1716 8 6 -0.4071 -3.9090 2.1033 9 6 0.0821 -4.8903 1.2511 10 7 -0.5516 -6.1367 1.1824 11 6 -1.7302 -6.4058 2.0098 12 6 -2.2166 -7.8083 1.7501 13 1 -1.6994 -8.4365 1.0401 14 6 -3.3221 -8.2895 2.4189 15 7 -3.9524 -7.5243 3.2832 16 14 -3.9255 -10.0277 2.0965 17 1 -3.2583 -10.9653 3.0351 18 1 -5.3954 -10.0870 2.2991 19 1 -3.6025 -10.4126 0.6991 20 6 1.1996 -4.6357 0.4671 21 6 1.8250 -3.4046 0.5347 22 9 2.9126 -3.1562 -0.2274 23 1 -0.3633 0.5478 0.8694 24 1 -0.3633 0.4790 -0.9092 25 1 -0.3633 -1.0269 0.0397 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 1.5921 -1.7135 -1.3044 30 1 1.7665 -0.1494 -2.1361 31 1 3.1247 -0.8146 -1.1975 32 1 -0.1642 -1.9161 2.8345 33 1 -1.2765 -4.1076 2.7124 34 1 -0.2103 -6.8221 0.5869 35 1 -1.4667 -6.3021 3.0623 36 1 -2.5187 -5.6955 1.7609 37 1 -4.7304 -7.8626 3.7535 38 1 1.5796 -5.3989 -0.1959 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819488241.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:06 Heat of formation + Delta-G solvation = -38.710562 kcal Electronic energy + Delta-G solvation = -19699.880366 eV Core-core repulsion = 16582.108444 eV Total energy + Delta-G solvation = -3117.771922 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.68919 -38.84576 -36.22642 -35.07380 -32.75807 -30.46121 -29.27719 -27.42769 -27.35485 -26.46705 -23.30396 -22.50485 -21.02378 -20.52981 -17.87683 -17.05145 -16.49928 -16.04186 -15.87010 -15.16815 -14.88480 -14.80214 -14.25865 -14.06169 -13.63531 -13.61607 -13.38021 -13.03714 -12.51809 -12.43909 -12.32276 -12.17381 -11.90724 -11.68114 -11.28018 -11.13516 -11.05641 -11.04598 -11.00317 -10.83445 -10.32958 -10.18897 -9.54435 -9.30896 -8.69719 -8.49191 -7.57448 -6.89916 -6.32666 -4.39088 1.34183 1.58530 2.09559 2.82211 3.15940 3.22825 3.24958 3.99875 4.01538 4.27227 4.67663 4.70994 4.72613 5.05041 5.07365 5.07637 5.46778 5.51810 5.52688 5.63337 5.65730 5.73277 5.76587 5.79232 5.85588 5.96253 6.15432 6.16963 6.21287 6.33173 6.56822 6.62395 6.87560 7.13721 7.23207 7.47614 7.77851 7.99013 8.39922 8.71064 9.27971 10.77711 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.035331 B = 0.003436 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.316085 B = 8147.441476 C = 8451.981224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.052 4.052 3 C -0.125 4.125 4 C -0.140 4.140 5 S -0.141 6.141 6 C -0.231 4.231 7 C 0.004 3.996 8 C -0.217 4.217 9 C 0.279 3.721 10 N -0.714 5.714 11 C 0.246 3.754 12 C -0.544 4.544 13 H 0.063 0.937 14 C 0.066 3.934 15 N -0.887 5.887 16 Si 0.905 3.095 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.272 1.272 20 C -0.261 4.261 21 C 0.186 3.814 22 F -0.132 7.132 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.396 0.604 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.267 0.733 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.283 13.564 -5.887 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C -0.183 4.183 4 C -0.198 4.198 5 S 0.093 5.907 6 C -0.346 4.346 7 C -0.017 4.017 8 C -0.241 4.241 9 C 0.165 3.835 10 N -0.333 5.333 11 C 0.126 3.874 12 C -0.582 4.582 13 H 0.081 0.919 14 C -0.138 4.138 15 N -0.524 5.524 16 Si 0.732 3.268 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.197 1.197 20 C -0.287 4.287 21 C 0.163 3.837 22 F -0.111 7.111 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.150 0.850 33 H 0.154 0.846 34 H 0.230 0.770 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.666 13.903 -4.858 17.616 hybrid contribution -1.008 -1.848 -1.371 2.512 sum 8.658 12.055 -6.229 16.096 Atomic orbital electron populations 1.22097 0.92794 1.02984 1.02163 1.22880 0.98597 0.98032 0.96558 1.21617 1.01487 0.92833 1.02403 1.22178 1.01921 1.00209 0.95526 1.85135 1.62516 1.09300 1.33741 1.20963 1.05933 0.97904 1.09830 1.21019 0.90766 0.95881 0.94065 1.20848 1.04735 0.93605 1.04960 1.17907 0.88798 0.86681 0.90084 1.45849 1.31484 1.10674 1.45251 1.19263 0.81281 0.96859 0.90045 1.21152 1.13426 0.98073 1.25596 0.91861 1.24923 0.95987 0.98362 0.94565 1.69928 1.20087 1.36535 1.25867 0.86384 0.78049 0.83568 0.78797 1.20347 1.20879 1.19706 1.20349 1.01454 0.97719 1.09137 1.17326 0.83382 0.93137 0.89849 1.91480 1.51768 1.94537 1.73302 0.91681 0.92297 0.91909 0.91960 0.91499 0.91809 0.92295 0.92524 0.91482 0.85019 0.84608 0.77043 0.95575 0.95604 0.92282 0.85225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.31 37.16 0.31 -1.29 16 2 C -0.05 -0.60 0.95 -90.62 -0.09 -0.68 16 3 C -0.12 -1.17 8.48 37.16 0.32 -0.85 16 4 C -0.14 -1.63 7.12 37.16 0.26 -1.37 16 5 S -0.14 -1.96 20.24 -107.50 -2.18 -4.14 16 6 C -0.23 -3.59 4.36 -39.04 -0.17 -3.76 16 7 C 0.00 0.07 9.41 -39.40 -0.37 -0.30 16 8 C -0.22 -3.76 9.31 -39.39 -0.37 -4.12 16 9 C 0.28 5.01 6.66 -83.66 -0.56 4.46 16 10 N -0.71 -14.04 5.74 -59.74 -0.34 -14.38 16 11 C 0.25 5.85 4.67 -5.19 -0.02 5.82 16 12 C -0.54 -14.05 9.28 -34.44 -0.32 -14.37 16 13 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 14 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -24.52 13.29 55.43 0.74 -23.78 16 16 Si 0.91 20.19 29.54 -169.99 -5.02 15.17 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 20 C -0.26 -4.26 9.87 -39.35 -0.39 -4.65 16 21 C 0.19 2.99 6.14 -39.26 -0.24 2.75 16 22 F -0.13 -2.07 14.46 2.25 0.03 -2.04 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.82 6.80 -51.93 -0.35 0.47 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.79 5.94 -51.93 -0.31 0.48 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.80 7.96 -51.93 -0.41 0.38 16 32 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.14 2.46 6.72 -52.49 -0.35 2.11 16 34 H 0.40 7.21 8.33 -40.82 -0.34 6.87 16 35 H 0.03 0.67 7.95 -51.93 -0.41 0.26 16 36 H 0.03 0.66 7.95 -51.93 -0.41 0.25 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 327.12 15.07 4.93 4.93 Total: -1.00 -26.65 327.12 -9.08 -35.73 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.51 Total: 5.25 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -1.73 Total: -16.73 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.39 Total: -38.17 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.03 Total: -2.04 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: -1.96 SS G_CDS: -2.18 Total: -4.14 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.65 -9.08 -35.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819488241.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.982 kcal (2) G-P(sol) polarization free energy of solvation -26.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds