Wall clock time and date at job start Tue Mar 31 2020 05:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00181 * 2 1 4 4 H 1.48501 * 109.47233 * 239.99942 * 3 2 1 5 5 H 1.48500 * 109.47018 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47329 * 119.99862 * 3 2 1 7 7 C 1.38811 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99999 * 158.60070 * 7 2 1 9 9 N 1.36930 * 120.00174 * 338.32212 * 7 2 1 10 10 C 1.46935 * 120.63096 * 153.97610 * 9 7 2 11 11 C 1.53626 * 108.54181 * 126.36777 * 10 9 7 12 12 C 1.53037 * 109.24238 * 54.86178 * 11 10 9 13 13 O 1.45192 * 109.44928 * 178.49661 * 12 11 10 14 14 C 1.34233 * 116.99827 * 270.05649 * 13 12 11 15 15 O 1.20821 * 119.99964 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00121 * 180.02562 * 14 13 12 17 17 H 1.09006 * 115.55078 * 298.83631 * 16 14 13 18 18 C 1.53002 * 117.49984 * 153.12335 * 16 14 13 19 19 C 1.52996 * 59.99915 * 252.50948 * 18 16 14 20 20 H 1.09004 * 117.50228 * 252.50671 * 19 18 16 21 21 C 1.50701 * 117.49724 * 107.49117 * 19 18 16 22 22 O 1.20826 * 119.99906 * 27.38978 * 21 19 18 23 23 O 1.34235 * 119.99882 * 207.38792 * 21 19 18 24 24 C 1.53041 * 109.53421 * 298.50538 * 12 11 10 25 25 C 1.46923 * 120.63391 * 334.25445 * 9 7 2 26 26 H 0.97003 * 120.00122 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.58721 * 246.20244 * 10 9 7 28 28 H 1.09004 * 109.58437 * 6.62558 * 10 9 7 29 29 H 1.08995 * 109.63691 * 294.86128 * 11 10 9 30 30 H 1.09008 * 109.45359 * 174.74207 * 11 10 9 31 31 H 1.08997 * 109.46380 * 58.52324 * 12 11 10 32 32 H 1.08990 * 117.49695 * 0.02562 * 18 16 14 33 33 H 1.09008 * 117.49618 * 145.02349 * 18 16 14 34 34 H 0.96698 * 116.99587 * 179.97438 * 23 21 19 35 35 H 1.09000 * 109.50438 * 301.41801 * 24 12 11 36 36 H 1.09000 * 109.52431 * 181.33313 * 24 12 11 37 37 H 1.09002 * 109.58344 * 353.37494 * 25 9 7 38 38 H 1.09005 * 109.58793 * 113.65142 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0343 -1.2346 -0.3407 9 7 1.3981 -2.3459 0.4391 10 6 1.8351 -3.6621 -0.0462 11 6 2.1467 -4.5514 1.1672 12 6 0.9247 -4.5953 2.0874 13 8 1.2017 -5.4631 3.2179 14 6 0.8915 -6.7618 3.0797 15 8 0.4051 -7.1601 2.0479 16 6 1.1500 -7.7229 4.2112 17 1 2.1922 -7.8225 4.5146 18 6 0.2670 -8.9696 4.2949 19 6 0.0831 -7.8329 5.3023 20 1 0.4233 -8.0054 6.3234 21 6 -1.1459 -6.9720 5.1631 22 8 -2.1484 -7.4261 4.6645 23 8 -1.1268 -5.7005 5.5931 24 6 0.6131 -3.1844 2.5920 25 6 0.2879 -2.2800 1.3992 26 1 -0.4850 0.8401 -0.0004 27 1 1.0411 -4.1147 -0.6401 28 1 2.7308 -3.5475 -0.6567 29 1 2.9978 -4.1428 1.7118 30 1 2.3825 -5.5599 0.8272 31 1 0.0677 -4.9807 1.5350 32 1 -0.5004 -9.0948 3.5312 33 1 0.7284 -9.8899 4.6532 34 1 -1.9389 -5.1874 5.4822 35 1 1.4787 -2.7885 3.1233 36 1 -0.2427 -3.2193 3.2661 37 1 0.1624 -1.2531 1.7426 38 1 -0.6304 -2.6197 0.9199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833067795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:34 Heat of formation + Delta-G solvation = -128.688890 kcal Electronic energy + Delta-G solvation = -22878.598226 eV Core-core repulsion = 19301.798891 eV Total energy + Delta-G solvation = -3576.799335 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.08054 -40.05837 -37.90151 -36.78082 -36.11685 -35.75660 -32.71003 -30.41797 -29.68503 -26.48381 -25.58870 -24.50650 -22.35517 -21.97111 -21.15995 -20.23389 -19.34507 -18.51937 -17.76910 -17.09507 -16.89698 -16.51069 -15.68428 -15.19642 -14.84240 -14.68353 -14.09818 -13.61860 -13.59061 -13.19890 -13.03601 -12.73680 -12.53823 -12.33470 -11.76350 -11.55523 -11.37734 -11.28521 -11.23030 -11.10849 -10.78223 -10.75273 -10.73248 -10.51113 -10.32458 -10.22438 -9.90643 -9.69385 -9.49276 -8.49487 -6.79751 -5.85197 -3.23515 1.80929 2.11288 2.49500 2.73256 3.29260 3.37358 3.43465 3.45122 4.10278 4.17891 4.46913 4.55231 4.84682 4.95407 5.20638 5.25166 5.29005 5.32457 5.37212 5.49974 5.63758 5.68676 5.95948 6.18071 6.27640 6.30067 6.37123 6.46272 6.53716 6.68678 6.79226 6.91021 7.23159 7.51190 7.65858 7.75986 7.85320 8.37054 9.13978 9.78210 10.34215 11.24222 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.030633 B = 0.004024 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.828308 B = 6956.202348 C = 7404.184512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.901 3.099 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.258 4.258 8 H 0.068 0.932 9 N -0.592 5.592 10 C 0.149 3.851 11 C -0.146 4.146 12 C 0.097 3.903 13 O -0.345 6.345 14 C 0.477 3.523 15 O -0.497 6.497 16 C -0.137 4.137 17 H 0.154 0.846 18 C -0.115 4.115 19 C -0.142 4.142 20 H 0.155 0.845 21 C 0.501 3.499 22 O -0.504 6.504 23 O -0.501 6.501 24 C -0.132 4.132 25 C 0.173 3.827 26 H 0.256 0.744 27 H 0.022 0.978 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.415 0.585 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.494 -14.988 12.675 19.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.387 4.387 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.022 3.978 11 C -0.186 4.186 12 C 0.044 3.956 13 O -0.261 6.261 14 C 0.319 3.681 15 O -0.385 6.385 16 C -0.156 4.156 17 H 0.172 0.828 18 C -0.151 4.151 19 C -0.161 4.161 20 H 0.172 0.828 21 C 0.343 3.657 22 O -0.392 6.392 23 O -0.313 6.313 24 C -0.172 4.172 25 C 0.047 3.953 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.274 0.726 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.310 -15.237 12.217 19.574 hybrid contribution -0.106 1.208 -0.083 1.216 sum 1.204 -14.029 12.134 18.587 Atomic orbital electron populations 1.70065 1.05342 1.25857 1.53129 1.24978 0.95182 0.98528 1.00794 0.86383 0.79045 0.83274 0.78217 1.20835 1.21614 1.20958 1.19150 0.94467 0.85531 1.39528 0.91430 1.44151 1.38940 1.00840 1.47505 1.20949 0.98120 0.86460 0.92286 1.22548 0.97408 1.00094 0.98520 1.23006 0.98913 0.89058 0.84641 1.86578 1.75879 1.18257 1.45410 1.22380 0.75111 0.83079 0.87577 1.90688 1.39970 1.78393 1.29436 1.21939 0.99536 0.98588 0.95488 0.82828 1.23268 1.00768 0.91747 0.99337 1.21822 0.93949 1.01064 0.99218 0.82761 1.22234 0.88643 0.80828 0.74031 1.90758 1.34155 1.73772 1.40467 1.84533 1.45715 1.24503 1.76546 1.22428 1.01425 0.92224 1.01104 1.20808 0.89254 0.98834 0.86439 0.93458 0.95998 0.91967 0.91193 0.92690 0.90504 0.86243 0.85489 0.72573 0.91296 0.92408 0.88636 0.96020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.86 11.33 55.49 0.63 -25.23 16 2 C 0.00 0.11 4.81 -17.43 -0.08 0.03 16 3 Si 0.90 21.41 29.60 -169.99 -5.03 16.37 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.26 -7.02 9.58 -15.06 -0.14 -7.17 16 8 H 0.07 1.80 7.91 -52.48 -0.42 1.39 16 9 N -0.59 -14.85 2.99 -172.04 -0.52 -15.37 16 10 C 0.15 3.20 6.54 -3.48 -0.02 3.18 16 11 C -0.15 -2.74 5.73 -26.39 -0.15 -2.89 16 12 C 0.10 1.82 2.41 -26.69 -0.06 1.76 16 13 O -0.35 -5.75 9.88 -39.26 -0.39 -6.14 16 14 C 0.48 7.29 6.62 36.00 0.24 7.53 16 15 O -0.50 -9.11 15.81 -18.75 -0.30 -9.41 16 16 C -0.14 -1.36 6.29 -91.77 -0.58 -1.93 16 17 H 0.15 1.03 8.14 -51.93 -0.42 0.60 16 18 C -0.11 -0.96 9.56 -26.73 -0.26 -1.21 16 19 C -0.14 -1.25 6.29 -91.78 -0.58 -1.83 16 20 H 0.15 0.79 8.14 -51.93 -0.42 0.37 16 21 C 0.50 6.07 7.02 36.01 0.25 6.32 16 22 O -0.50 -7.67 17.36 -18.75 -0.33 -8.00 16 23 O -0.50 -5.37 13.42 -39.27 -0.53 -5.90 16 24 C -0.13 -2.58 5.74 -26.61 -0.15 -2.73 16 25 C 0.17 4.10 5.35 -3.71 -0.02 4.08 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 1.29 7.93 -51.93 -0.41 0.87 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.05 0.96 8.14 -51.92 -0.42 0.53 16 31 H 0.08 1.56 7.16 -51.93 -0.37 1.19 16 32 H 0.12 1.31 7.71 -51.93 -0.40 0.91 16 33 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.41 2.98 9.10 45.56 0.41 3.40 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.10 2.49 6.03 -51.93 -0.31 2.18 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 325.10 15.07 4.90 4.90 Total: -1.00 -34.16 325.10 -7.55 -41.71 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -4.44 Total: 1.93 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -1.56 Total: 5.13 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.11 Total: -40.60 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -1.54 Total: -29.44 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.16 -7.55 -41.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.975 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds