Wall clock time and date at job start Tue Mar 31 2020 05:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99767 * 2 1 4 4 H 1.48497 * 109.47031 * 240.00460 * 3 2 1 5 5 H 1.48497 * 109.47002 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46816 * 120.00341 * 3 2 1 7 7 C 1.37877 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99933 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.34783 * 119.99876 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99849 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99737 * 180.02562 * 11 10 9 14 14 C 1.53006 * 109.47079 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47294 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.47170 * 180.02562 * 15 14 13 17 17 C 1.38425 * 120.02136 * 90.00332 * 16 15 14 18 18 F 1.35101 * 120.01402 * 359.70506 * 17 16 15 19 19 C 1.38476 * 119.97328 * 179.97438 * 17 16 15 20 20 C 1.38207 * 120.02410 * 0.02562 * 19 17 16 21 21 C 1.38207 * 120.05360 * 359.97438 * 20 19 17 22 22 C 1.38412 * 120.02814 * 269.97965 * 16 15 14 23 23 F 1.35096 * 120.01191 * 0.02562 * 22 16 15 24 24 H 0.96993 * 119.99918 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.46687 * 60.00703 * 9 7 2 26 26 H 1.08996 * 109.47727 * 300.00679 * 9 7 2 27 27 H 0.96999 * 120.00365 * 0.02562 * 10 9 7 28 28 H 1.08999 * 109.47479 * 60.00288 * 13 11 10 29 29 H 1.08994 * 109.47373 * 299.99615 * 13 11 10 30 30 H 1.09008 * 109.46613 * 60.00213 * 14 13 11 31 31 H 1.08994 * 109.47241 * 300.00894 * 14 13 11 32 32 H 1.09008 * 109.46866 * 60.00674 * 15 14 13 33 33 H 1.09006 * 109.47655 * 300.00535 * 15 14 13 34 34 H 1.08001 * 119.98752 * 179.97438 * 19 17 16 35 35 H 1.08000 * 119.97200 * 180.02562 * 20 19 17 36 36 H 1.07995 * 119.99247 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8834 -0.0011 12 8 0.5617 -5.1050 -0.0020 13 6 2.7333 -6.0287 -0.0005 14 6 1.9684 -7.3538 -0.0006 15 6 2.9626 -8.5166 -0.0006 16 6 2.2092 -9.8218 -0.0014 17 6 1.8635 -10.4212 -1.2003 18 9 2.1961 -9.8334 -2.3704 19 6 1.1716 -11.6207 -1.1998 20 6 0.8259 -12.2192 -0.0030 21 6 1.1705 -11.6216 1.1946 22 6 1.8628 -10.4223 1.1966 23 9 2.1996 -9.8384 2.3674 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5572 0.8896 27 1 3.1569 -3.4354 -0.0002 28 1 3.3593 -5.9711 0.8900 29 1 3.3606 -5.9709 -0.8899 30 1 1.3421 -7.4117 -0.8909 31 1 1.3413 -7.4114 0.8890 32 1 3.5892 -8.4590 0.8895 33 1 3.5895 -8.4588 -0.8906 34 1 0.9014 -12.0884 -2.1351 35 1 0.2866 -13.1549 -0.0036 36 1 0.8995 -12.0899 2.1293 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847968037.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:38 Heat of formation + Delta-G solvation = -128.119216 kcal Electronic energy + Delta-G solvation = -20935.219539 eV Core-core repulsion = 17247.357391 eV Total energy + Delta-G solvation = -3687.862148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.21292 -49.21125 -39.27123 -38.75574 -35.15672 -34.09345 -32.31654 -31.38071 -30.58815 -27.97018 -26.46322 -23.46633 -23.15195 -22.15755 -21.09615 -19.54677 -18.40235 -17.61890 -17.10987 -16.29268 -16.14732 -15.83473 -15.50410 -15.49474 -15.37542 -15.11675 -14.65431 -14.33787 -13.78248 -13.77252 -13.04674 -13.03793 -12.52140 -12.48437 -12.10303 -11.97977 -11.96290 -11.60264 -11.42855 -11.16682 -10.94964 -10.85333 -10.62854 -10.29960 -9.39288 -9.15434 -9.05716 -8.95819 -8.71247 -7.84307 -6.14843 -4.21869 0.65974 0.67232 3.03687 3.26306 3.30915 3.32563 3.43691 3.61707 4.06760 4.11759 4.25853 4.36248 4.39660 4.52260 4.82149 5.05208 5.14703 5.19840 5.20951 5.42460 5.45410 5.62102 5.63336 5.68924 5.71995 5.76039 5.81868 5.94050 6.24166 6.38347 6.48096 7.33714 7.48142 7.54579 7.68965 7.99452 8.66818 8.80421 9.15239 9.44899 10.95420 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.035770 B = 0.002707 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.597261 B =10339.535926 C =10555.265970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.715 5.715 11 C 0.496 3.504 12 O -0.558 6.558 13 C -0.140 4.140 14 C -0.095 4.095 15 C -0.083 4.083 16 C -0.147 4.147 17 C 0.131 3.869 18 F -0.127 7.127 19 C -0.164 4.164 20 C -0.069 4.069 21 C -0.164 4.164 22 C 0.131 3.869 23 F -0.127 7.127 24 H 0.266 0.734 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.390 0.610 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.465 -25.211 -0.002 26.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.128 3.872 10 N -0.363 5.363 11 C 0.281 3.719 12 O -0.438 6.438 13 C -0.180 4.180 14 C -0.133 4.133 15 C -0.120 4.120 16 C -0.149 4.149 17 C 0.112 3.888 18 F -0.105 7.105 19 C -0.183 4.183 20 C -0.087 4.087 21 C -0.183 4.183 22 C 0.112 3.888 23 F -0.105 7.105 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.223 0.777 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.454 -25.147 -0.003 25.731 hybrid contribution 0.976 1.260 0.001 1.594 sum 6.430 -23.887 -0.002 24.737 Atomic orbital electron populations 1.69965 1.06122 1.27399 1.48864 1.24961 0.94918 0.99458 0.94716 0.86470 0.79410 0.82310 0.78685 1.20060 1.21066 1.20064 1.21203 0.93225 0.90516 1.53258 0.91956 1.19087 0.88372 0.82061 0.97661 1.46482 1.11058 1.06278 1.72450 1.20505 0.89546 0.84489 0.77365 1.90651 1.17097 1.85005 1.51029 1.21658 0.98705 0.93797 1.03888 1.21256 0.97078 0.90988 1.04003 1.20583 0.97636 0.89750 1.04034 1.19963 1.04216 0.99558 0.91153 1.17230 0.98392 0.92497 0.80718 1.91538 1.90264 1.83561 1.45178 1.21221 1.01428 0.95317 1.00303 1.20823 0.97683 0.99635 0.90547 1.21221 1.01455 0.95297 1.00294 1.17227 0.98367 0.92537 0.80703 1.91536 1.90151 1.83739 1.45116 0.92396 0.95615 0.95624 0.77719 0.89344 0.89339 0.90981 0.90974 0.89952 0.89956 0.84045 0.84000 0.84046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 9 C 0.25 6.76 5.43 -5.19 -0.03 6.73 16 10 N -0.71 -15.40 5.55 -61.47 -0.34 -15.74 16 11 C 0.50 10.12 7.83 -10.98 -0.09 10.03 16 12 O -0.56 -13.82 15.98 5.56 0.09 -13.73 16 13 C -0.14 -1.98 5.70 -27.88 -0.16 -2.14 16 14 C -0.10 -1.33 4.49 -26.73 -0.12 -1.45 16 15 C -0.08 -0.91 4.99 -27.89 -0.14 -1.05 16 16 C -0.15 -1.61 5.15 -104.49 -0.54 -2.15 16 17 C 0.13 1.37 7.24 -39.42 -0.29 1.08 16 18 F -0.13 -1.46 16.48 2.25 0.04 -1.43 16 19 C -0.16 -1.30 10.03 -39.50 -0.40 -1.70 16 20 C -0.07 -0.46 10.04 -39.60 -0.40 -0.86 16 21 C -0.16 -1.30 10.03 -39.50 -0.40 -1.70 16 22 C 0.13 1.37 7.24 -39.43 -0.29 1.08 16 23 F -0.13 -1.46 16.48 2.25 0.04 -1.43 16 24 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.39 7.14 8.32 -40.82 -0.34 6.80 16 28 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.11 8.10 -51.92 -0.42 0.69 16 31 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 32 H 0.08 0.83 7.64 -51.92 -0.40 0.43 16 33 H 0.08 0.83 7.64 -51.93 -0.40 0.43 16 34 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 323.97 15.07 4.88 4.88 Total: -1.00 -33.31 323.97 -7.30 -40.60 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.47 Total: 2.31 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -3.25 Total: -5.76 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.40 Total: -41.50 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.07 Total: -2.85 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.31 -7.30 -40.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847968037.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.517 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds