Wall clock time and date at job start Tue Mar 31 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35368 * 126.13680 * 2 1 4 4 Cl 1.73603 * 126.04543 * 359.94513 * 3 2 1 5 5 C 1.39924 * 107.90848 * 179.97438 * 3 2 1 6 6 N 1.30857 * 108.21480 * 359.76084 * 5 3 2 7 7 N 1.35051 * 126.13324 * 179.97438 * 2 1 3 8 8 C 1.46499 * 126.03758 * 359.97438 * 7 2 1 9 9 N 1.46899 * 109.47035 * 90.00113 * 8 7 2 10 10 C 1.46843 * 111.00049 * 294.21123 * 9 8 7 11 11 C 1.53043 * 109.52446 * 174.16274 * 10 9 8 12 12 C 1.53115 * 109.28035 * 59.17281 * 11 10 9 13 13 C 1.53119 * 109.16391 * 302.35079 * 12 11 10 14 14 H 1.09002 * 109.50021 * 297.71564 * 13 12 11 15 15 C 1.50700 * 109.50789 * 177.59456 * 13 12 11 16 16 H 1.07998 * 120.00243 * 240.19782 * 15 13 12 17 17 C 1.37882 * 119.99823 * 60.19159 * 15 13 12 18 18 N 1.31509 * 119.99730 * 0.02562 * 17 15 13 19 19 Si 1.86791 * 119.99835 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47325 * 60.00188 * 19 17 15 21 21 H 1.48500 * 109.47515 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47461 * 300.00402 * 19 17 15 23 23 C 1.46842 * 111.00041 * 169.99480 * 9 8 7 24 24 H 1.09003 * 109.46862 * 270.02053 * 1 2 3 25 25 H 1.08999 * 109.47061 * 30.02513 * 1 2 3 26 26 H 1.08999 * 109.47181 * 150.02536 * 1 2 3 27 27 H 1.08001 * 125.89591 * 179.97438 * 5 3 2 28 28 H 1.09002 * 109.47391 * 330.00098 * 8 7 2 29 29 H 1.09001 * 109.46813 * 210.00155 * 8 7 2 30 30 H 1.09004 * 109.46019 * 294.17499 * 10 9 8 31 31 H 1.08999 * 109.46883 * 54.14319 * 10 9 8 32 32 H 1.09007 * 109.49669 * 299.23395 * 11 10 9 33 33 H 1.09001 * 109.53519 * 179.13897 * 11 10 9 34 34 H 1.08996 * 109.52692 * 182.44132 * 12 11 10 35 35 H 1.09007 * 109.57302 * 62.28363 * 12 11 10 36 36 H 0.97006 * 119.99707 * 180.02562 * 18 17 15 37 37 H 1.08998 * 109.46877 * 305.85973 * 23 9 8 38 38 H 1.09002 * 109.46302 * 65.82604 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3053 1.0932 0.0000 4 17 1.7741 2.7460 -0.0013 5 6 3.6344 0.6556 0.0006 6 7 3.6341 -0.6530 0.0061 7 7 2.3034 -1.0907 0.0005 8 6 1.8549 -2.4854 0.0016 9 7 1.7045 -2.9525 -1.3830 10 6 0.6225 -2.2325 -2.0667 11 6 0.5901 -2.6390 -3.5418 12 6 0.3677 -4.1503 -3.6450 13 6 1.4811 -4.8754 -2.8840 14 1 2.4431 -4.6493 -3.3440 15 6 1.2372 -6.3618 -2.9307 16 1 1.1003 -6.9156 -2.0137 17 6 1.1885 -7.0146 -4.1442 18 7 1.3555 -6.3402 -5.2608 19 14 0.8854 -8.8569 -4.2020 20 1 -0.4267 -9.1626 -3.5774 21 1 0.8798 -9.3136 -5.6151 22 1 1.9626 -9.5594 -3.4596 23 6 1.4878 -4.4041 -1.4280 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 4.5095 1.2885 0.0004 28 1 0.8965 -2.5584 0.5159 29 1 2.5911 -3.1033 0.5157 30 1 -0.3307 -2.4815 -1.6003 31 1 0.7950 -1.1591 -1.9894 32 1 1.5381 -2.3776 -4.0121 33 1 -0.2227 -2.1162 -4.0461 34 1 0.3871 -4.4507 -4.6926 35 1 -0.5981 -4.4079 -3.2101 36 1 1.3209 -6.7995 -6.1145 37 1 2.2886 -4.9080 -0.8869 38 1 0.5305 -4.6430 -0.9647 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853524810.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:41 Heat of formation + Delta-G solvation = 71.592375 kcal Electronic energy + Delta-G solvation = -20486.730279 eV Core-core repulsion = 17391.617707 eV Total energy + Delta-G solvation = -3095.112572 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.41141 -38.34889 -36.43035 -34.37539 -32.66136 -32.24621 -30.56982 -29.88974 -27.07500 -25.72478 -25.04306 -22.40707 -21.85199 -20.93143 -19.75430 -18.81147 -17.04997 -16.56641 -15.94150 -15.02388 -14.89104 -14.42680 -14.31487 -13.90580 -13.69926 -13.38291 -13.16041 -12.83260 -12.57652 -12.39258 -12.33422 -11.98250 -11.81537 -11.52763 -11.30398 -10.98816 -10.79573 -10.74063 -10.46936 -10.23982 -9.93040 -9.60449 -9.51703 -9.19418 -8.81952 -8.39795 -8.37584 -7.96187 -6.03544 -4.10702 1.67202 1.97924 2.59296 2.78492 3.28420 3.33876 3.35557 4.17004 4.41664 4.45890 4.59555 4.80864 5.10761 5.24126 5.26188 5.27910 5.43821 5.50654 5.57083 5.65796 5.79017 5.90140 6.05511 6.17519 6.33070 6.35652 6.56236 6.59124 6.76717 6.80254 7.09616 7.19572 7.41274 7.52040 7.63192 7.69009 7.97798 8.08282 8.37658 8.92678 9.54091 11.02466 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.039219 B = 0.003691 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.772871 B = 7583.671070 C = 7794.675704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.105 3.895 3 C -0.193 4.193 4 Cl -0.052 7.052 5 C 0.058 3.942 6 N -0.265 5.265 7 N -0.346 5.346 8 C 0.297 3.703 9 N -0.548 5.548 10 C 0.055 3.945 11 C -0.116 4.116 12 C -0.111 4.111 13 C 0.057 3.943 14 H 0.036 0.964 15 C -0.519 4.519 16 H 0.054 0.946 17 C 0.065 3.935 18 N -0.887 5.887 19 Si 0.892 3.108 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.073 3.927 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.188 0.812 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.029 0.971 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.092 0.908 35 H 0.031 0.969 36 H 0.261 0.739 37 H 0.065 0.935 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 13.951 10.468 17.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.025 4.025 3 C -0.232 4.232 4 Cl -0.024 7.024 5 C -0.129 4.129 6 N -0.086 5.086 7 N -0.129 5.129 8 C 0.087 3.913 9 N -0.275 5.275 10 C -0.073 4.073 11 C -0.154 4.154 12 C -0.149 4.149 13 C 0.038 3.962 14 H 0.054 0.946 15 C -0.557 4.557 16 H 0.072 0.928 17 C -0.137 4.137 18 N -0.525 5.525 19 Si 0.720 3.280 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.053 4.053 24 H 0.101 0.899 25 H 0.108 0.892 26 H 0.102 0.898 27 H 0.205 0.795 28 H 0.083 0.917 29 H 0.128 0.872 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.081 12.913 10.028 16.385 hybrid contribution -1.363 -0.218 0.269 1.406 sum -2.444 12.694 10.297 16.527 Atomic orbital electron populations 1.20795 0.86925 1.05065 1.03802 1.20712 0.94793 0.86732 1.00255 1.20417 0.93281 0.85866 1.23638 1.98296 1.90311 1.15850 1.97909 1.23797 0.96466 0.92219 1.00449 1.77558 0.97145 1.11354 1.22504 1.48593 1.03389 1.05751 1.55190 1.22155 0.99365 0.77197 0.92573 1.61878 1.45825 1.07603 1.12167 1.22330 0.90952 0.97235 0.96759 1.21665 1.00869 0.99646 0.93198 1.21675 0.98277 0.90228 1.04730 1.18662 0.95866 0.94017 0.87648 0.94586 1.21056 1.49775 0.92435 0.92468 0.92775 1.24929 0.95021 0.98082 0.95700 1.69877 1.49611 1.35536 0.97480 0.86662 0.78739 0.85625 0.76976 1.20351 1.21280 1.20257 1.22332 0.98534 0.82072 1.02383 0.89893 0.89200 0.89803 0.79526 0.91692 0.87238 0.95343 0.91952 0.92041 0.93240 0.88919 0.94985 0.92888 0.91604 0.95549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.09 36.01 0.33 -0.75 16 2 C 0.10 1.36 5.67 -82.20 -0.47 0.90 16 3 C -0.19 -2.49 6.64 -39.97 -0.27 -2.75 16 4 Cl -0.05 -0.57 28.88 -51.86 -1.50 -2.07 16 5 C 0.06 0.77 12.02 -17.34 -0.21 0.56 16 6 N -0.27 -4.18 12.58 30.64 0.39 -3.79 16 7 N -0.35 -5.09 3.57 -60.09 -0.21 -5.31 16 8 C 0.30 4.28 5.91 -63.32 -0.37 3.90 16 9 N -0.55 -9.62 4.79 -238.58 -1.14 -10.76 16 10 C 0.05 0.91 3.94 -3.83 -0.02 0.89 16 11 C -0.12 -2.21 6.09 -26.65 -0.16 -2.37 16 12 C -0.11 -2.52 5.03 -26.61 -0.13 -2.66 16 13 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 14 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 15 C -0.52 -13.70 8.56 -34.44 -0.29 -13.99 16 16 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 18 N -0.89 -24.81 11.36 55.43 0.63 -24.18 16 19 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.07 1.43 4.68 -3.84 -0.02 1.42 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.09 0.82 7.91 -51.93 -0.41 0.41 16 26 H 0.08 0.87 4.65 -51.93 -0.24 0.63 16 27 H 0.19 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.07 0.79 7.64 -51.93 -0.40 0.39 16 29 H 0.11 1.52 7.99 -51.93 -0.41 1.11 16 30 H 0.03 0.44 7.32 -51.93 -0.38 0.06 16 31 H 0.06 0.98 5.19 -51.93 -0.27 0.71 16 32 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 2.39 6.17 -51.93 -0.32 2.07 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.07 1.27 8.02 -51.93 -0.42 0.85 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 315.09 15.07 4.75 4.75 Total: -1.00 -28.75 315.09 -9.38 -38.13 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -5.35 Total: -0.45 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -1.91 Total: -12.05 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.34 Total: -44.04 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.75 -9.38 -38.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853524810.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.721 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds