Wall clock time and date at job start Tue Mar 31 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47168 * 2 1 4 4 C 1.50711 * 109.46902 * 119.99629 * 2 1 3 5 5 N 1.29999 * 127.34024 * 300.02390 * 4 2 1 6 6 O 1.20653 * 112.32165 * 179.97438 * 5 4 2 7 7 C 1.33465 * 113.17772 * 0.02562 * 6 5 4 8 8 C 1.37444 * 106.32678 * 359.97438 * 7 6 5 9 9 C 1.47257 * 128.57495 * 179.97438 * 8 7 6 10 10 O 1.21531 * 120.00026 * 180.02562 * 9 8 7 11 11 O 1.34757 * 119.99571 * 0.02562 * 9 8 7 12 12 C 1.45205 * 116.99774 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47164 * 179.97438 * 12 11 9 14 14 O 1.42902 * 109.47078 * 65.00165 * 13 12 11 15 15 C 1.42900 * 113.99943 * 179.97438 * 14 13 12 16 16 C 1.50707 * 109.46757 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00435 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99583 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00240 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99825 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47164 * 60.00090 * 20 18 16 22 22 H 1.48501 * 109.47014 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46986 * 299.99878 * 20 18 16 24 24 H 1.08999 * 109.46954 * 60.00386 * 1 2 3 25 25 H 1.09001 * 109.46982 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46987 * 300.00223 * 1 2 3 27 27 H 1.08999 * 109.47251 * 239.99298 * 2 1 3 28 28 H 1.09005 * 109.47358 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46868 * 299.99666 * 3 2 1 30 30 H 1.09000 * 109.47348 * 59.99998 * 3 2 1 31 31 H 1.07994 * 126.83912 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.47380 * 300.00324 * 12 11 9 33 33 H 1.09002 * 109.46843 * 60.00461 * 12 11 9 34 34 H 1.08999 * 109.47319 * 185.00132 * 13 12 11 35 35 H 1.09000 * 109.47696 * 305.00205 * 13 12 11 36 36 H 1.09001 * 109.47655 * 300.00221 * 15 14 13 37 37 H 1.09004 * 109.47183 * 60.00588 * 15 14 13 38 38 H 0.96999 * 120.00088 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.8076 -0.3932 2.4711 6 8 2.3430 -1.1512 3.2422 7 6 3.0295 -2.1209 2.6341 8 6 2.8814 -1.9109 1.2839 9 6 3.4363 -2.6935 0.1667 10 8 3.2043 -2.3643 -0.9800 11 8 4.2013 -3.7745 0.4159 12 6 4.7139 -4.4984 -0.7338 13 6 5.5541 -5.6846 -0.2564 14 8 4.7165 -6.6147 0.4332 15 6 5.4066 -7.7664 0.9225 16 6 4.4319 -8.6739 1.6279 17 1 3.3897 -8.3989 1.6954 18 6 4.8708 -9.8553 2.1871 19 7 6.1400 -10.1900 2.1053 20 14 3.6626 -10.9806 3.0608 21 1 2.6047 -11.4054 2.1092 22 1 4.3800 -12.1768 3.5704 23 1 3.0428 -10.2540 4.1979 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.5898 -2.9129 3.1086 32 1 3.8808 -4.8615 -1.3356 33 1 5.3338 -3.8332 -1.3350 34 1 6.0113 -6.1752 -1.1156 35 1 6.3343 -5.3298 0.4170 36 1 5.8605 -8.3001 0.0875 37 1 6.1839 -7.4550 1.6203 38 1 6.4489 -11.0209 2.4990 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860230305.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:52 Heat of formation + Delta-G solvation = -86.603590 kcal Electronic energy + Delta-G solvation = -21689.437010 eV Core-core repulsion = 18114.462631 eV Total energy + Delta-G solvation = -3574.974380 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.15688 -40.22921 -37.23919 -36.58562 -35.94111 -33.03873 -32.76830 -31.88554 -30.14496 -27.43643 -27.04421 -25.49220 -23.87957 -22.57740 -22.22421 -21.14476 -20.22823 -18.34986 -17.90831 -17.26242 -16.63767 -16.52018 -16.24381 -15.35848 -15.08282 -14.86389 -14.62572 -14.35007 -13.86331 -13.58428 -13.53936 -13.02198 -12.67495 -12.49223 -12.08736 -11.97949 -11.63750 -11.59612 -11.49859 -11.19852 -11.00065 -10.87975 -10.81617 -10.52953 -10.46540 -10.21972 -10.09925 -9.98296 -9.19216 -8.92968 -8.26714 -6.16022 -4.18172 0.75904 1.52325 2.35931 2.79294 3.01299 3.29413 3.32379 3.36045 3.74400 3.96564 4.28048 4.59307 4.65677 4.79286 4.83743 4.86753 4.96075 5.13556 5.20585 5.30477 5.35929 5.37894 5.46821 5.54394 5.63667 5.76484 5.78805 5.86308 5.94044 5.98075 6.08458 6.43175 6.99563 7.34218 7.67539 7.73410 7.95906 8.07496 8.46357 8.93904 9.46860 10.95394 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.022921 B = 0.003210 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.293555 B = 8719.761379 C = 9329.236903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.027 4.027 3 C -0.142 4.142 4 C 0.083 3.917 5 N -0.354 5.354 6 O 0.095 5.905 7 C 0.035 3.965 8 C -0.249 4.249 9 C 0.546 3.454 10 O -0.505 6.505 11 O -0.336 6.336 12 C 0.077 3.923 13 C 0.061 3.939 14 O -0.391 6.391 15 C 0.195 3.805 16 C -0.517 4.517 17 H 0.066 0.934 18 C 0.057 3.943 19 N -0.899 5.899 20 Si 0.909 3.091 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.111 0.889 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.239 0.761 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.006 0.994 37 H 0.008 0.992 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.191 20.070 -2.836 20.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.046 4.046 3 C -0.200 4.200 4 C -0.081 4.081 5 N -0.062 5.062 6 O 0.038 5.962 7 C -0.047 4.047 8 C -0.255 4.255 9 C 0.391 3.609 10 O -0.395 6.395 11 O -0.252 6.252 12 C 0.004 3.996 13 C -0.017 4.017 14 O -0.311 6.311 15 C 0.121 3.879 16 C -0.555 4.555 17 H 0.084 0.916 18 C -0.144 4.144 19 N -0.538 5.538 20 Si 0.736 3.264 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.129 0.871 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.255 0.745 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.974 20.957 -2.459 21.930 hybrid contribution 0.322 -1.467 -0.197 1.514 sum -5.652 19.490 -2.656 20.466 Atomic orbital electron populations 1.21822 0.93215 1.02502 1.02537 1.19845 0.96466 0.95805 0.92517 1.21816 1.01338 0.94267 1.02559 1.24811 0.96015 0.93150 0.94079 1.73646 1.16988 1.14023 1.01505 1.84605 1.48175 1.29573 1.33838 1.26835 0.93207 0.92646 0.91980 1.21351 1.09757 1.01264 0.93124 1.19451 0.75927 0.78697 0.86864 1.90808 1.57530 1.68794 1.22361 1.86629 1.60854 1.38102 1.39596 1.23294 0.98656 0.91838 0.85834 1.22336 0.92965 0.89166 0.97200 1.87918 1.35696 1.33571 1.73950 1.20239 0.93116 0.81363 0.93199 1.21006 0.95652 1.03670 1.35210 0.91552 1.24947 0.95602 0.97631 0.96241 1.69946 1.14228 1.24262 1.45316 0.86383 0.80638 0.79544 0.79853 1.19990 1.21126 1.19950 0.91415 0.92294 0.92122 0.87058 0.92439 0.91424 0.92125 0.74476 0.90181 0.90129 0.91701 0.93096 0.97587 0.97466 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.18 37.16 0.34 -0.98 16 2 C -0.03 -0.29 3.33 -91.77 -0.31 -0.59 16 3 C -0.14 -1.25 9.17 37.15 0.34 -0.91 16 4 C 0.08 1.01 6.09 -79.75 -0.49 0.53 16 5 N -0.35 -4.35 12.01 34.79 0.42 -3.93 16 6 O 0.10 1.06 11.06 18.72 0.21 1.26 16 7 C 0.04 0.36 12.24 30.44 0.37 0.74 16 8 C -0.25 -3.19 6.47 -102.91 -0.67 -3.86 16 9 C 0.55 8.05 7.95 34.40 0.27 8.33 16 10 O -0.50 -8.07 15.05 -19.29 -0.29 -8.36 16 11 O -0.34 -5.25 10.10 -43.43 -0.44 -5.69 16 12 C 0.08 1.15 5.85 37.16 0.22 1.36 16 13 C 0.06 1.05 6.33 37.16 0.24 1.28 16 14 O -0.39 -9.10 10.30 -38.80 -0.40 -9.50 16 15 C 0.19 5.18 5.69 36.01 0.20 5.38 16 16 C -0.52 -14.93 9.43 -34.44 -0.32 -15.25 16 17 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 20 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.11 1.30 6.29 -51.93 -0.33 0.97 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.24 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -32.64 338.03 -4.96 -37.59 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -5.37 Total: -4.85 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 0.11 Total: -2.45 kcal Atomic # 7 Polarization: -30.71 SS G_CDS: 1.15 Total: -29.56 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.92 Total: -22.28 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.64 -4.96 -37.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860230305.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.009 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds