Wall clock time and date at job start Tue Mar 31 2020 06:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00007 * 2 1 4 4 C 1.50705 * 109.46903 * 269.99588 * 3 2 1 5 5 H 1.08004 * 119.99589 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99994 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00144 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99812 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47380 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47243 * 120.00221 * 8 6 4 11 11 H 1.48499 * 109.46993 * 239.99800 * 8 6 4 12 12 C 1.38530 * 120.00028 * 179.97438 * 2 1 3 13 13 C 1.39670 * 120.52597 * 185.00203 * 12 2 1 14 14 C 1.38073 * 118.36270 * 180.02562 * 13 12 2 15 15 C 1.50706 * 120.38636 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47010 * 74.99935 * 15 14 13 17 17 C 1.52999 * 109.46887 * 194.99680 * 15 14 13 18 18 C 1.52998 * 109.47419 * 314.99685 * 15 14 13 19 19 N 1.32566 * 119.22161 * 0.27412 * 14 13 12 20 20 C 1.31895 * 120.99447 * 359.44060 * 19 14 13 21 21 Cl 1.73600 * 119.10320 * 180.29260 * 20 19 14 22 22 N 1.31901 * 121.79568 * 0.57803 * 20 19 14 23 23 H 1.08993 * 109.47290 * 270.00914 * 1 2 3 24 24 H 1.09006 * 109.46964 * 30.00701 * 1 2 3 25 25 H 1.08993 * 109.47140 * 150.00238 * 1 2 3 26 26 H 1.08998 * 109.47224 * 29.99150 * 3 2 1 27 27 H 1.09003 * 109.47655 * 149.99666 * 3 2 1 28 28 H 0.97004 * 120.00318 * 179.97438 * 7 6 4 29 29 H 1.07998 * 120.81720 * 0.04871 * 13 12 2 30 30 H 1.09003 * 109.47073 * 59.99910 * 16 15 14 31 31 H 1.09002 * 109.46988 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.47317 * 299.99934 * 16 15 14 33 33 H 1.09004 * 109.47289 * 60.00138 * 17 15 14 34 34 H 1.09002 * 109.47021 * 180.02562 * 17 15 14 35 35 H 1.09003 * 109.47398 * 300.00214 * 17 15 14 36 36 H 1.09000 * 109.46725 * 60.00177 * 18 15 14 37 37 H 1.08992 * 109.47315 * 180.02562 * 18 15 14 38 38 H 1.09005 * 109.47176 * 300.00774 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4209 5 1 2.0975 1.0960 -2.2417 6 6 3.1261 2.8778 -1.6729 7 7 3.5525 3.6185 -0.6733 8 14 3.4381 3.4166 -3.4341 9 1 2.8611 2.4160 -4.3675 10 1 2.8001 4.7369 -3.6683 11 1 4.9007 3.5255 -3.6667 12 6 2.1577 -1.1997 0.0005 13 6 3.5504 -1.2148 0.1054 14 6 4.1953 -2.4356 0.1009 15 6 5.6966 -2.5050 0.2123 16 6 6.1148 -2.2169 1.6555 17 6 6.1735 -3.9027 -0.1876 18 6 6.3257 -1.4660 -0.7181 19 7 3.4788 -3.5456 -0.0075 20 6 2.1639 -3.4990 -0.0996 21 17 1.2736 -4.9835 -0.2320 22 7 1.5073 -2.3551 -0.0994 23 1 -0.3633 0.0002 1.0276 24 1 -0.3633 0.8900 -0.5140 25 1 -0.3633 -0.8899 -0.5138 26 1 1.6084 2.0284 0.5137 27 1 3.1500 1.1385 0.5139 28 1 4.0293 4.4445 -0.8506 29 1 4.1089 -0.2942 0.1884 30 1 5.6667 -2.9572 2.3183 31 1 7.2007 -2.2676 1.7361 32 1 5.7750 -1.2212 1.9404 33 1 5.8756 -4.1080 -1.2158 34 1 7.2594 -3.9531 -0.1066 35 1 5.7254 -4.6430 0.4752 36 1 5.9859 -0.4703 -0.4332 37 1 7.4115 -1.5165 -0.6379 38 1 6.0277 -1.6712 -1.7463 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872386294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:09 Heat of formation + Delta-G solvation = 32.772944 kcal Electronic energy + Delta-G solvation = -20567.277615 eV Core-core repulsion = 17470.481706 eV Total energy + Delta-G solvation = -3096.795909 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.66127 -37.26395 -36.78605 -35.79124 -32.99883 -31.89724 -30.56686 -28.07449 -27.13665 -27.10132 -25.72587 -23.79218 -23.34040 -21.40750 -19.12413 -17.21575 -16.83395 -16.58532 -15.25086 -15.03961 -14.95379 -14.40174 -14.28250 -13.89946 -13.62530 -13.44071 -13.25423 -12.28938 -12.19976 -11.96204 -11.69593 -11.51339 -11.50021 -11.43673 -11.22166 -11.11014 -10.99987 -10.92853 -10.90083 -10.73858 -10.39348 -10.31594 -9.99123 -9.70740 -9.02821 -8.76629 -8.65575 -7.20472 -6.25416 -4.34860 1.42133 1.79427 1.84622 3.16559 3.25515 3.29946 3.63616 4.21854 4.28559 4.37859 4.94011 5.05392 5.11566 5.17303 5.33419 5.48037 5.77482 5.80293 5.85356 5.88801 5.94608 6.00148 6.02447 6.05899 6.09098 6.23662 6.32420 6.34013 6.48908 6.57572 6.69862 6.79567 7.00724 7.28432 7.66114 7.91877 7.95210 8.02893 8.55600 8.74852 9.33081 10.79499 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.006233 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.511555 B = 4491.345355 C = 5659.392446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.571 5.571 3 C 0.247 3.753 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.459 3.541 13 C -0.268 4.268 14 C 0.212 3.788 15 C -0.015 4.015 16 C -0.136 4.136 17 C -0.124 4.124 18 C -0.142 4.142 19 N -0.559 5.559 20 C 0.403 3.597 21 Cl -0.004 7.004 22 N -0.584 5.584 23 H 0.042 0.958 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.266 0.734 29 H 0.156 0.844 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.256 -10.666 3.020 11.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.279 5.279 3 C 0.128 3.872 4 C -0.577 4.577 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.215 3.785 13 C -0.297 4.297 14 C 0.073 3.927 15 C -0.016 4.016 16 C -0.194 4.194 17 C -0.182 4.182 18 C -0.200 4.200 19 N -0.283 5.283 20 C 0.106 3.894 21 Cl 0.024 6.976 22 N -0.314 5.314 23 H 0.061 0.939 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.174 0.826 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.660 -11.164 2.978 11.673 hybrid contribution 0.310 1.098 -0.982 1.506 sum 1.970 -10.066 1.996 10.449 Atomic orbital electron populations 1.21552 0.79790 1.02872 1.00499 1.47140 1.05963 1.03374 1.71394 1.19541 0.92256 0.77558 0.97842 1.21512 1.37169 1.06901 0.92101 0.92037 1.24920 0.95079 0.96029 0.97639 1.69921 1.37871 1.14297 1.30816 0.86444 0.78183 0.78623 0.84307 1.19680 1.20741 1.20645 1.18364 0.88307 0.85485 0.86359 1.22155 0.94218 1.00804 1.12492 1.20991 0.95510 0.86861 0.89336 1.19486 0.87709 0.97557 0.96891 1.21857 1.01265 1.02141 0.94103 1.21660 0.99468 0.94978 1.02081 1.21949 1.00174 0.98776 0.99067 1.67534 1.05589 1.32478 1.22729 1.22209 0.86234 0.87030 0.93900 1.98375 1.73900 1.29442 1.95892 1.67182 1.41468 0.96903 1.25806 0.93927 0.91085 0.91096 0.93973 0.94184 0.92429 0.82642 0.92537 0.91801 0.91992 0.92604 0.93049 0.91696 0.91243 0.91974 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 10.51 59.85 0.63 2.35 16 2 N -0.57 -11.97 2.96 -182.92 -0.54 -12.51 16 3 C 0.25 5.78 5.03 -5.19 -0.03 5.76 16 4 C -0.54 -13.87 9.39 -34.44 -0.32 -14.20 16 5 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 6 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -24.00 13.29 55.43 0.74 -23.26 16 8 Si 0.90 20.39 29.54 -169.99 -5.02 15.36 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 C 0.46 9.50 7.39 -154.80 -1.14 8.36 16 13 C -0.27 -5.22 8.36 -39.11 -0.33 -5.54 16 14 C 0.21 3.72 5.56 -82.33 -0.46 3.26 16 15 C -0.02 -0.22 0.88 -155.66 -0.14 -0.35 16 16 C -0.14 -1.69 8.41 37.16 0.31 -1.38 16 17 C -0.12 -1.59 7.83 37.16 0.29 -1.30 16 18 C -0.14 -1.97 8.10 37.16 0.30 -1.67 16 19 N -0.56 -10.12 9.15 -7.97 -0.07 -10.20 16 20 C 0.40 7.49 8.18 -91.98 -0.75 6.74 16 21 Cl 0.00 -0.06 29.27 -51.86 -1.52 -1.57 16 22 N -0.58 -11.63 9.20 -10.87 -0.10 -11.73 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 25 H 0.07 1.24 7.33 -51.93 -0.38 0.86 16 26 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 27 H 0.04 0.97 6.05 -51.93 -0.31 0.65 16 28 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.16 3.11 4.93 -52.49 -0.26 2.85 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.86 7.89 -51.93 -0.41 0.45 16 36 H 0.07 1.06 6.78 -51.93 -0.35 0.71 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 330.17 15.07 4.98 4.98 Total: -1.00 -27.23 330.17 -8.75 -35.98 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.48 Total: -0.70 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -1.73 Total: 3.65 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.02 Total: -57.70 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.52 Total: -1.57 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.23 -8.75 -35.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872386294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.756 kcal (2) G-P(sol) polarization free energy of solvation -27.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds