Wall clock time and date at job start Tue Mar 31 2020 05:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00345 * 2 1 4 4 H 1.48504 * 109.46901 * 239.99772 * 3 2 1 5 5 H 1.48501 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47596 * 119.99603 * 3 2 1 7 7 C 1.37883 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99811 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.28620 * 299.32730 * 9 7 2 11 11 C 1.54257 * 110.32628 * 61.45328 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.84329 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.52999 * 109.46697 * 74.48907 * 14 13 12 16 16 C 1.53004 * 109.47231 * 180.02562 * 15 14 13 17 17 O 1.42893 * 109.47438 * 180.02562 * 16 15 14 18 18 C 1.42904 * 114.00267 * 179.97438 * 17 16 15 19 19 F 1.39906 * 109.46929 * 59.99814 * 18 17 16 20 20 F 1.39893 * 109.47238 * 179.97438 * 18 17 16 21 21 F 1.39895 * 109.46971 * 300.00188 * 18 17 16 22 22 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 23 23 H 0.97002 * 119.99478 * 0.02562 * 1 2 3 24 24 H 0.96695 * 113.99929 * 60.67881 * 10 9 7 25 25 H 1.09002 * 110.32715 * 237.79384 * 11 9 7 26 26 H 1.08998 * 110.32251 * 359.89910 * 11 9 7 27 27 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 28 28 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 29 29 H 1.08997 * 109.47620 * 194.49319 * 14 13 12 30 30 H 1.08999 * 109.47148 * 314.49752 * 14 13 12 31 31 H 1.09001 * 109.47808 * 300.00257 * 15 14 13 32 32 H 1.08997 * 109.47144 * 60.00574 * 15 14 13 33 33 H 1.09001 * 109.46812 * 300.00718 * 16 15 14 34 34 H 1.09002 * 109.47047 * 59.99836 * 16 15 14 35 35 H 1.08999 * 110.41133 * 201.79165 * 22 13 12 36 36 H 1.09001 * 110.41003 * 79.35561 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4342 -2.5997 1.1689 11 6 0.3849 -2.6178 -1.2704 12 6 0.9178 -3.8657 -2.0067 13 7 2.3140 -4.0191 -1.5179 14 6 2.7937 -5.3933 -1.7165 15 6 3.0992 -5.6176 -3.1988 16 6 3.5983 -7.0491 -3.4057 17 8 3.8842 -7.2584 -4.7901 18 6 4.3604 -8.5712 -5.0932 19 9 3.3951 -9.5142 -4.7238 20 9 4.6084 -8.6718 -6.4663 21 9 5.5431 -8.8131 -4.3863 22 6 2.2350 -3.6865 -0.0722 23 1 -0.4849 0.8401 -0.0004 24 1 -0.2327 -1.9035 1.2436 25 1 -0.6629 -2.7545 -1.0032 26 1 0.5035 -1.7313 -1.8934 27 1 0.3255 -4.7428 -1.7457 28 1 0.9060 -3.7050 -3.0847 29 1 3.6996 -5.5501 -1.1310 30 1 2.0260 -6.0964 -1.3934 31 1 2.1933 -5.4609 -3.7843 32 1 3.8669 -4.9146 -3.5219 33 1 4.5041 -7.2062 -2.8201 34 1 2.8303 -7.7519 -3.0826 35 1 3.2146 -3.3920 0.3043 36 1 1.8492 -4.5352 0.4926 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878762274.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:12 Heat of formation + Delta-G solvation = -261.279482 kcal Electronic energy + Delta-G solvation = -22607.693791 eV Core-core repulsion = 18483.288156 eV Total energy + Delta-G solvation = -4124.405635 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.118 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.43193 -48.18193 -48.12089 -38.81457 -38.21523 -35.29621 -32.73824 -32.09178 -29.25171 -27.97367 -26.09500 -24.87218 -23.76739 -21.87470 -20.27674 -19.54606 -19.40942 -19.23038 -18.91641 -17.02673 -16.17773 -15.79509 -15.07286 -14.95334 -14.82363 -14.78642 -14.55493 -14.47373 -14.30472 -14.26363 -14.12744 -13.73651 -13.66377 -12.92311 -12.51519 -12.14028 -11.99450 -11.62055 -11.43403 -11.20122 -10.99733 -10.91408 -10.62144 -10.53022 -10.40761 -10.31335 -9.92547 -9.05206 -8.55835 -8.13865 -7.90824 -6.15964 -4.21650 1.63776 2.83226 3.28736 3.32811 3.36580 3.77722 3.87604 4.35516 4.39105 4.66635 4.76050 5.02392 5.12077 5.16066 5.36359 5.64236 5.66718 5.79905 5.91525 6.00894 6.13251 6.18068 6.22847 6.37601 6.48532 6.84913 7.02896 7.19256 7.52214 7.63777 7.66471 7.85754 8.21708 8.80524 9.42387 9.51344 10.91536 Molecular weight = 283.12amu Principal moments of inertia in cm(-1) A = 0.033808 B = 0.003062 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.006568 B = 9141.069581 C = 9436.314783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.066 3.934 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.249 3.751 10 O -0.595 6.595 11 C -0.121 4.121 12 C 0.031 3.969 13 N -0.500 5.500 14 C 0.048 3.952 15 C -0.109 4.109 16 C 0.055 3.945 17 O -0.371 6.371 18 C 0.594 3.406 19 F -0.178 7.178 20 F -0.144 7.144 21 F -0.177 7.177 22 C 0.054 3.946 23 H 0.266 0.734 24 H 0.383 0.617 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.029 0.971 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.592 -15.195 -8.071 18.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.080 0.920 9 C 0.209 3.791 10 O -0.404 6.404 11 C -0.160 4.160 12 C -0.097 4.097 13 N -0.224 5.224 14 C -0.081 4.081 15 C -0.147 4.147 16 C -0.020 4.020 17 O -0.294 6.294 18 C 0.502 3.498 19 F -0.160 7.160 20 F -0.126 7.126 21 F -0.159 7.159 22 C -0.074 4.074 23 H 0.076 0.924 24 H 0.233 0.767 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.175 -15.142 -8.381 18.375 hybrid contribution -0.378 0.486 0.223 0.655 sum 5.797 -14.656 -8.158 17.747 Atomic orbital electron populations 1.69686 1.05909 1.27408 1.51119 1.25007 0.94991 0.99416 0.94130 0.86528 0.79547 0.82421 0.78746 1.20115 1.21314 1.20197 1.21608 0.93529 0.90385 1.50299 0.92011 1.19246 0.86437 0.91517 0.81897 1.86079 1.52123 1.55781 1.46449 1.22859 0.98285 0.95579 0.99282 1.23235 0.88287 0.98509 0.99670 1.65275 1.21664 1.20239 1.15248 1.22089 1.00280 0.91250 0.94475 1.21466 1.03103 0.92399 0.97713 1.23014 1.01280 1.00413 0.77251 1.88342 1.84204 1.25861 1.31041 1.19550 0.75113 0.79822 0.75280 1.93258 1.64260 1.66884 1.91596 1.93260 1.94003 1.95618 1.29715 1.93257 1.49075 1.94450 1.79150 1.22987 1.00494 0.97401 0.86498 0.92412 0.76696 0.93067 0.90566 0.95264 0.91456 0.90812 0.94767 0.90472 0.89452 0.90728 0.90971 0.90405 0.95050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.02 10.81 55.43 0.60 -23.42 16 2 C 0.07 1.74 5.02 -17.82 -0.09 1.65 16 3 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.52 -13.92 8.10 -34.44 -0.28 -14.20 16 8 H 0.06 1.66 7.53 -52.49 -0.40 1.27 16 9 C 0.25 6.12 1.05 -90.39 -0.10 6.02 16 10 O -0.60 -15.36 12.94 -35.23 -0.46 -15.82 16 11 C -0.12 -2.78 5.55 -25.35 -0.14 -2.92 16 12 C 0.03 0.58 5.93 -2.09 -0.01 0.56 16 13 N -0.50 -9.28 5.34 -229.83 -1.23 -10.51 16 14 C 0.05 0.67 4.83 -3.82 -0.02 0.66 16 15 C -0.11 -1.31 5.70 -26.73 -0.15 -1.47 16 16 C 0.06 0.56 5.66 37.16 0.21 0.77 16 17 O -0.37 -4.14 10.58 -35.23 -0.37 -4.51 16 18 C 0.59 5.98 3.75 101.05 0.38 6.36 16 19 F -0.18 -1.76 16.86 2.25 0.04 -1.72 16 20 F -0.14 -1.49 17.53 2.25 0.04 -1.45 16 21 F -0.18 -1.75 16.86 2.25 0.04 -1.72 16 22 C 0.05 1.13 5.74 -2.18 -0.01 1.12 16 23 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 24 H 0.38 9.99 7.32 45.56 0.33 10.32 16 25 H 0.05 1.18 7.98 -51.93 -0.41 0.76 16 26 H 0.08 1.91 7.23 -51.93 -0.38 1.54 16 27 H 0.03 0.51 7.75 -51.93 -0.40 0.11 16 28 H 0.07 1.17 7.86 -51.93 -0.41 0.76 16 29 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 30 H 0.03 0.46 7.77 -51.93 -0.40 0.05 16 31 H 0.08 0.97 7.47 -51.93 -0.39 0.58 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 0.66 7.73 -51.93 -0.40 0.25 16 34 H 0.07 0.64 7.73 -51.93 -0.40 0.24 16 35 H 0.08 1.65 7.67 -51.93 -0.40 1.25 16 36 H 0.03 0.64 7.94 -51.93 -0.41 0.23 16 LS Contribution 309.63 15.07 4.67 4.67 Total: -1.00 -27.22 309.63 -5.95 -33.17 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.04 Total: 6.96 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -0.21 Total: -1.43 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: -0.63 Total: -33.93 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.83 Total: -20.33 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.12 Total: -4.89 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.22 -5.95 -33.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878762274.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -228.108 kcal (2) G-P(sol) polarization free energy of solvation -27.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -261.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds