Wall clock time and date at job start Tue Mar 31 2020 05:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 O 1.42899 * 110.27406 * 59.29762 * 9 7 2 11 11 C 1.54601 * 110.30664 * 297.21135 * 9 7 2 12 12 C 1.55103 * 102.84538 * 219.18372 * 11 9 7 13 13 N 1.48535 * 103.28125 * 37.30582 * 12 11 9 14 14 C 1.46899 * 111.00098 * 200.33413 * 13 12 11 15 15 C 1.53004 * 109.46867 * 287.39520 * 14 13 12 16 16 C 1.53004 * 109.47240 * 179.97438 * 15 14 13 17 17 O 1.42889 * 109.47263 * 180.02562 * 16 15 14 18 18 C 1.42908 * 113.99981 * 180.02562 * 17 16 15 19 19 F 1.39896 * 109.46978 * 60.00038 * 18 17 16 20 20 F 1.39899 * 109.47177 * 180.02562 * 18 17 16 21 21 F 1.39897 * 109.46887 * 299.99961 * 18 17 16 22 22 C 1.47908 * 105.82202 * 320.84797 * 13 12 11 23 23 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 24 24 H 0.96699 * 114.00025 * 300.70280 * 10 9 7 25 25 H 1.09003 * 110.72458 * 337.48004 * 11 9 7 26 26 H 1.09005 * 110.72391 * 100.76907 * 11 9 7 27 27 H 1.08996 * 110.59657 * 278.87550 * 12 11 9 28 28 H 1.08994 * 110.83258 * 155.84556 * 12 11 9 29 29 H 1.08997 * 109.47414 * 47.39601 * 14 13 12 30 30 H 1.08999 * 109.47616 * 167.39850 * 14 13 12 31 31 H 1.08997 * 109.47384 * 299.99722 * 15 14 13 32 32 H 1.09001 * 109.47057 * 60.00496 * 15 14 13 33 33 H 1.09003 * 109.46946 * 300.00762 * 16 15 14 34 34 H 1.09005 * 109.46404 * 59.99941 * 16 15 14 35 35 H 1.09001 * 109.91016 * 265.97584 * 22 13 12 36 36 H 1.08993 * 109.91789 * 144.68733 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 8 0.4059 -2.5830 -1.1551 11 6 0.4140 -2.6355 1.2868 12 6 0.5749 -4.1360 1.6452 13 7 1.9845 -4.4254 1.2775 14 6 2.1938 -5.8670 1.0879 15 6 2.1728 -6.5684 2.4475 16 6 2.3902 -8.0700 2.2501 17 8 2.3700 -8.7252 3.5198 18 6 2.5656 -10.1390 3.4475 19 9 3.8079 -10.4086 2.8636 20 9 2.5280 -10.6815 4.7365 21 9 1.5516 -10.7109 2.6717 22 6 2.2342 -3.6840 0.0222 23 1 -0.4849 0.8401 0.0041 24 1 -0.2488 -1.8738 -1.2144 25 1 0.8200 -2.0047 2.0776 26 1 -0.6316 -2.3927 1.0967 27 1 -0.1095 -4.7464 1.0561 28 1 0.4140 -4.2994 2.7108 29 1 1.4000 -6.2698 0.4590 30 1 3.1580 -6.0342 0.6077 31 1 2.9667 -6.1657 3.0765 32 1 1.2087 -6.4013 2.9277 33 1 1.5960 -8.4725 1.6212 34 1 3.3542 -8.2375 1.7697 35 1 2.0568 -4.3342 -0.8345 36 1 3.2600 -3.3159 0.0061 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878762275.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:16 Heat of formation + Delta-G solvation = -262.789335 kcal Electronic energy + Delta-G solvation = -22573.774521 eV Core-core repulsion = 18449.303414 eV Total energy + Delta-G solvation = -4124.471107 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.118 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.43392 -48.18418 -48.12271 -38.82963 -38.22964 -35.27950 -32.70200 -32.09779 -29.25842 -28.07611 -26.13118 -24.87150 -23.72008 -21.87913 -20.26861 -19.53173 -19.43313 -19.23239 -18.92338 -17.09988 -16.17771 -15.77130 -15.03641 -14.96874 -14.85418 -14.78201 -14.55520 -14.49115 -14.31229 -14.27145 -14.11783 -13.83813 -13.68508 -12.82073 -12.46103 -12.18102 -11.96055 -11.64822 -11.41484 -11.25512 -10.96576 -10.93071 -10.67772 -10.49801 -10.42337 -10.31262 -9.94879 -9.17714 -8.59118 -8.13058 -7.87227 -6.20423 -4.26558 1.63424 2.83104 3.23934 3.31051 3.34947 3.77457 3.87438 4.31469 4.41464 4.66321 4.76689 5.02142 5.08460 5.15921 5.37030 5.63556 5.68125 5.80249 5.94371 6.03536 6.12792 6.21162 6.23351 6.40699 6.46710 6.90372 7.02512 7.25424 7.50150 7.61240 7.66133 7.83083 8.15342 8.75087 9.39890 9.49818 10.87275 Molecular weight = 283.12amu Principal moments of inertia in cm(-1) A = 0.044679 B = 0.002880 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.545640 B = 9720.493158 C = 9832.869331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.242 3.758 10 O -0.595 6.595 11 C -0.117 4.117 12 C 0.029 3.971 13 N -0.513 5.513 14 C 0.050 3.950 15 C -0.109 4.109 16 C 0.055 3.945 17 O -0.371 6.371 18 C 0.594 3.406 19 F -0.177 7.177 20 F -0.145 7.145 21 F -0.177 7.177 22 C 0.055 3.945 23 H 0.266 0.734 24 H 0.383 0.617 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.035 0.965 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.945 -17.002 5.321 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.080 0.920 9 C 0.202 3.798 10 O -0.405 6.405 11 C -0.156 4.156 12 C -0.098 4.098 13 N -0.238 5.238 14 C -0.079 4.079 15 C -0.147 4.147 16 C -0.020 4.020 17 O -0.295 6.295 18 C 0.502 3.498 19 F -0.159 7.159 20 F -0.126 7.126 21 F -0.160 7.160 22 C -0.072 4.072 23 H 0.076 0.924 24 H 0.234 0.766 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.501 -17.187 5.768 18.464 hybrid contribution -0.425 0.774 -0.593 1.064 sum 3.076 -16.413 5.175 17.482 Atomic orbital electron populations 1.69654 1.05950 1.27399 1.50967 1.25019 0.95011 0.99486 0.93876 0.86455 0.79887 0.82680 0.78163 1.20576 1.21149 1.19742 1.21695 0.93534 0.90600 1.50863 0.91970 1.19358 0.86450 0.91537 0.82423 1.86085 1.51900 1.54935 1.47584 1.23007 1.00794 0.91442 1.00373 1.23387 0.88051 0.99136 0.99266 1.64728 1.22886 1.05096 1.31069 1.22090 1.01145 0.90030 0.94597 1.21481 1.04514 0.89271 0.99426 1.23016 1.02638 0.94618 0.81712 1.88338 1.91981 1.14656 1.34505 1.19549 0.74317 0.81740 0.74156 1.93257 1.43918 1.94088 1.84674 1.93261 1.96266 1.84951 1.38130 1.93258 1.61137 1.85743 1.75825 1.22850 1.00630 0.95107 0.88629 0.92370 0.76604 0.91329 0.91631 0.94811 0.91602 0.94645 0.90898 0.89562 0.90471 0.90927 0.90722 0.94549 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.85 10.88 55.43 0.60 -23.24 16 2 C 0.07 1.78 5.26 -17.82 -0.09 1.69 16 3 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.53 -14.09 8.11 -34.44 -0.28 -14.37 16 8 H 0.06 1.65 7.34 -52.49 -0.39 1.27 16 9 C 0.24 5.94 0.99 -90.42 -0.09 5.85 16 10 O -0.60 -15.34 12.92 -35.23 -0.46 -15.79 16 11 C -0.12 -2.68 5.42 -24.78 -0.13 -2.81 16 12 C 0.03 0.55 5.92 -1.81 -0.01 0.54 16 13 N -0.51 -9.45 5.25 -230.35 -1.21 -10.66 16 14 C 0.05 0.71 4.71 -3.82 -0.02 0.70 16 15 C -0.11 -1.30 5.67 -26.73 -0.15 -1.45 16 16 C 0.06 0.55 5.66 37.16 0.21 0.76 16 17 O -0.37 -4.11 10.58 -35.23 -0.37 -4.48 16 18 C 0.59 5.96 3.75 101.05 0.38 6.34 16 19 F -0.18 -1.74 16.86 2.25 0.04 -1.71 16 20 F -0.14 -1.48 17.53 2.25 0.04 -1.44 16 21 F -0.18 -1.77 16.86 2.25 0.04 -1.73 16 22 C 0.06 1.17 6.13 -2.76 -0.02 1.15 16 23 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 24 H 0.38 10.02 7.18 45.56 0.33 10.35 16 25 H 0.07 1.66 7.86 -51.93 -0.41 1.26 16 26 H 0.07 1.55 8.02 -51.93 -0.42 1.14 16 27 H 0.03 0.62 7.81 -51.93 -0.41 0.22 16 28 H 0.07 1.12 7.80 -51.93 -0.40 0.71 16 29 H 0.04 0.50 7.83 -51.93 -0.41 0.09 16 30 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 0.96 7.37 -51.93 -0.38 0.58 16 33 H 0.07 0.66 7.73 -51.93 -0.40 0.26 16 34 H 0.07 0.65 7.73 -51.93 -0.40 0.25 16 35 H 0.04 0.76 7.59 -51.93 -0.39 0.36 16 36 H 0.08 1.71 7.39 -51.93 -0.38 1.32 16 LS Contribution 309.52 15.07 4.66 4.66 Total: -1.00 -26.97 309.52 -5.92 -32.89 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.04 Total: 7.51 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -0.20 Total: -1.60 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: -0.61 Total: -33.90 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.83 Total: -20.28 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.12 Total: -4.87 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -26.97 -5.92 -32.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878762275.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -229.901 kcal (2) G-P(sol) polarization free energy of solvation -26.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -256.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds