Wall clock time and date at job start Tue Mar 31 2020 06:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47255 * 2 1 4 4 H 1.08994 * 109.47378 * 174.06802 * 3 2 1 5 5 C 1.50700 * 109.47305 * 54.06544 * 3 2 1 6 6 H 1.08002 * 119.99999 * 240.00827 * 5 3 2 7 7 C 1.37871 * 120.00065 * 60.00014 * 5 3 2 8 8 N 1.31515 * 120.00035 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00121 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47445 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47269 * 120.00301 * 9 7 5 12 12 H 1.48502 * 109.47172 * 240.00543 * 9 7 5 13 13 N 1.46904 * 109.46728 * 294.06540 * 3 2 1 14 14 C 1.46895 * 111.00011 * 275.33820 * 13 3 2 15 15 C 1.50706 * 109.47003 * 176.50788 * 14 13 3 16 16 C 1.39970 * 126.04629 * 90.02046 * 15 14 13 17 17 Cl 1.73593 * 125.91490 * 359.94345 * 16 15 14 18 18 N 1.30899 * 108.16985 * 179.97438 * 16 15 14 19 19 N 1.40078 * 108.20506 * 359.97438 * 18 16 15 20 20 H 0.97005 * 126.02458 * 179.97438 * 19 18 16 21 21 C 1.34948 * 107.95065 * 359.77482 * 19 18 16 22 22 C 1.50693 * 126.12103 * 180.23165 * 21 19 18 23 23 C 1.53008 * 117.49632 * 8.78054 * 22 21 19 24 24 C 1.53001 * 59.99927 * 252.51286 * 23 22 21 25 25 H 1.08997 * 109.47352 * 298.55748 * 1 2 3 26 26 H 1.09002 * 109.47205 * 178.55105 * 1 2 3 27 27 H 1.09008 * 109.46763 * 58.55635 * 1 2 3 28 28 H 1.09000 * 109.46765 * 119.99077 * 2 1 3 29 29 H 1.08992 * 109.47799 * 239.99321 * 2 1 3 30 30 H 0.96996 * 120.00047 * 179.97438 * 8 7 5 31 31 H 1.00911 * 110.99988 * 39.29068 * 13 3 2 32 32 H 1.09005 * 109.47061 * 296.50059 * 14 13 3 33 33 H 1.08997 * 109.47274 * 56.50574 * 14 13 3 34 34 H 1.09000 * 115.55105 * 154.48670 * 22 21 19 35 35 H 1.08999 * 117.49898 * 359.97438 * 23 22 21 36 36 H 1.08996 * 117.49521 * 145.02589 * 23 22 21 37 37 H 1.09004 * 117.50219 * 252.51636 * 24 23 22 38 38 H 1.08999 * 117.51937 * 107.47964 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4444 0.1062 5 6 1.4214 2.1941 1.1504 6 1 0.8145 3.0672 0.9610 7 6 1.6300 1.7671 2.4446 8 7 2.3693 0.7042 2.6753 9 14 0.8626 2.6983 3.8705 10 1 0.0820 3.8484 3.3479 11 1 -0.0385 1.7916 4.6262 12 1 1.9338 3.1950 4.7711 13 7 1.6708 2.0924 -1.2647 14 6 2.6574 1.8020 -2.3135 15 6 2.2022 2.4121 -3.6142 16 6 2.5055 3.7001 -4.0705 17 17 3.4719 4.8752 -3.2347 18 7 1.9336 3.8653 -5.2363 19 7 1.2487 2.6868 -5.5587 20 1 0.7348 2.5282 -6.3661 21 6 1.4334 1.8092 -4.5503 22 6 0.8794 0.4097 -4.4779 23 6 0.2025 -0.1478 -5.7318 24 6 -0.6416 0.2491 -4.5190 25 1 -0.3634 0.4912 0.9026 26 1 -0.3634 -1.0273 -0.0260 27 1 -0.3633 0.5361 -0.8768 28 1 1.8933 -0.5137 0.8901 29 1 1.8934 -0.5139 -0.8898 30 1 2.5164 0.4040 3.5858 31 1 0.7437 1.8189 -1.5546 32 1 3.6220 2.2246 -2.0320 33 1 2.7542 0.7229 -2.4325 34 1 1.4426 -0.2874 -3.8574 35 1 0.1576 0.4978 -6.6088 36 1 0.3204 -1.2119 -5.9363 37 1 -1.0791 -0.5539 -3.9256 38 1 -1.2415 1.1557 -4.5979 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893606119.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:19 Heat of formation + Delta-G solvation = 88.350248 kcal Electronic energy + Delta-G solvation = -20418.489003 eV Core-core repulsion = 17324.103106 eV Total energy + Delta-G solvation = -3094.385896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.43985 -37.28094 -36.53293 -36.33758 -33.07867 -31.30797 -30.80215 -29.39417 -26.42048 -24.41068 -23.30072 -22.98843 -22.66912 -21.27011 -19.44807 -19.15289 -17.53542 -15.99109 -15.97745 -15.11470 -14.92648 -14.67244 -14.46417 -13.91774 -13.64082 -13.08790 -12.67194 -12.48131 -12.08632 -11.95182 -11.83775 -11.79699 -11.38713 -11.30423 -10.97774 -10.89961 -10.79863 -10.64096 -10.47350 -10.31041 -9.90682 -9.79406 -9.51168 -9.13708 -8.91387 -8.34726 -8.28676 -7.07450 -5.91614 -3.92010 1.66214 1.77575 2.59401 3.09751 3.35408 3.43814 3.49470 3.63911 4.27743 4.50644 4.52977 4.70443 4.93671 5.03706 5.32040 5.39824 5.40552 5.59931 5.64602 5.73884 5.81136 5.97569 6.16958 6.34620 6.37035 6.44332 6.51040 6.62178 6.92324 7.12714 7.32633 7.35842 7.48639 7.55440 7.75684 7.97114 8.36004 8.65761 8.71411 9.14627 9.71576 11.15550 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016264 B = 0.005592 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.185435 B = 5005.618984 C = 6249.939144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.144 4.144 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.483 4.483 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.674 5.674 14 C 0.133 3.867 15 C -0.192 4.192 16 C 0.146 3.854 17 Cl 0.014 6.986 18 N -0.286 5.286 19 N -0.466 5.466 20 H 0.438 0.562 21 C 0.127 3.873 22 C -0.094 4.094 23 C -0.177 4.177 24 C -0.159 4.159 25 H 0.065 0.935 26 H 0.020 0.980 27 H 0.030 0.970 28 H 0.091 0.909 29 H 0.009 0.991 30 H 0.257 0.743 31 H 0.325 0.675 32 H 0.074 0.926 33 H 0.027 0.973 34 H 0.134 0.866 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.790 -1.792 -16.229 16.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.183 4.183 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.522 4.522 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.305 5.305 14 C 0.003 3.997 15 C -0.204 4.204 16 C -0.046 4.046 17 Cl 0.042 6.958 18 N -0.113 5.113 19 N -0.177 5.177 20 H 0.283 0.717 21 C -0.002 4.002 22 C -0.114 4.114 23 C -0.215 4.215 24 C -0.197 4.197 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.109 0.891 29 H 0.028 0.972 30 H 0.067 0.933 31 H 0.144 0.856 32 H 0.093 0.907 33 H 0.045 0.955 34 H 0.152 0.848 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.504 -0.349 -16.755 16.944 hybrid contribution -0.628 -0.964 0.928 1.478 sum -3.132 -1.313 -15.827 16.187 Atomic orbital electron populations 1.21556 0.97761 0.97764 1.01288 1.22092 0.94935 1.01263 1.00045 1.19208 0.96111 0.88489 0.85451 0.94878 1.21109 1.30044 1.11323 0.89682 0.92023 1.24889 0.95664 0.95187 0.98629 1.69891 1.39521 1.24290 1.20061 0.86562 0.79031 0.79955 0.82603 1.19784 1.21368 1.21258 1.60889 1.03573 1.63132 1.02945 1.20198 0.97144 0.95886 0.86474 1.19748 1.07183 0.93593 0.99910 1.22520 0.97761 0.91655 0.92656 1.98399 1.66971 1.55965 1.74482 1.77301 1.14094 1.04216 1.15648 1.45869 1.43214 1.09814 1.18814 0.71707 1.19846 0.98824 0.92066 0.89416 1.20636 0.96191 0.91534 1.03051 1.23014 1.04392 1.02236 0.91831 1.23079 0.91965 1.03900 1.00743 0.91618 0.96114 0.95134 0.89071 0.97184 0.93300 0.85646 0.90748 0.95535 0.84837 0.89228 0.87593 0.87372 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.39 37.16 0.35 -2.23 16 2 C -0.14 -3.22 5.50 -26.73 -0.15 -3.37 16 3 C 0.22 5.17 2.33 -68.86 -0.16 5.01 16 4 H 0.03 0.89 7.85 -51.93 -0.41 0.48 16 5 C -0.48 -12.91 7.35 -34.44 -0.25 -13.16 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.53 5.22 -17.82 -0.09 1.43 16 8 N -0.90 -25.07 11.39 55.43 0.63 -24.44 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 13 N -0.67 -13.98 6.24 -109.22 -0.68 -14.66 16 14 C 0.13 2.39 5.61 -4.98 -0.03 2.37 16 15 C -0.19 -3.10 5.58 -105.01 -0.59 -3.69 16 16 C 0.15 2.41 7.84 -17.30 -0.14 2.28 16 17 Cl 0.01 0.23 29.04 -51.86 -1.51 -1.28 16 18 N -0.29 -4.43 12.70 32.94 0.42 -4.01 16 19 N -0.47 -5.73 7.23 33.47 0.24 -5.49 16 20 H 0.44 3.83 7.96 -182.61 -1.45 2.37 16 21 C 0.13 1.68 6.71 -82.27 -0.55 1.13 16 22 C -0.09 -1.01 5.95 -91.77 -0.55 -1.55 16 23 C -0.18 -1.36 10.14 -26.73 -0.27 -1.63 16 24 C -0.16 -1.46 10.23 -26.73 -0.27 -1.73 16 25 H 0.06 1.50 7.04 -51.93 -0.37 1.14 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.56 6.42 -51.92 -0.33 0.23 16 28 H 0.09 2.33 6.25 -51.93 -0.32 2.00 16 29 H 0.01 0.20 7.27 -51.93 -0.38 -0.18 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.33 6.52 6.55 -39.29 -0.26 6.26 16 32 H 0.07 1.40 7.99 -51.93 -0.42 0.99 16 33 H 0.03 0.46 6.44 -51.93 -0.33 0.13 16 34 H 0.13 1.50 7.41 -51.93 -0.38 1.12 16 35 H 0.09 0.57 7.16 -51.93 -0.37 0.20 16 36 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 326.37 15.07 4.92 4.92 Total: -1.00 -29.09 326.37 -9.96 -39.04 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.26 Total: 4.73 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -2.70 Total: -15.15 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.61 Total: -48.61 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -1.51 Total: -1.28 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.09 -9.96 -39.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893606119.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.395 kcal (2) G-P(sol) polarization free energy of solvation -29.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds