Wall clock time and date at job start Tue Mar 31 2020 05:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00037 * 2 1 4 4 H 1.48502 * 109.46842 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47410 * 299.99480 * 3 2 1 6 6 H 1.48500 * 109.47116 * 60.00112 * 3 2 1 7 7 C 1.37878 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00247 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47231 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47191 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47312 * 179.97438 * 11 10 9 13 13 O 1.20823 * 120.00043 * 359.97438 * 12 11 10 14 14 O 1.34230 * 120.00466 * 180.02562 * 12 11 10 15 15 C 1.45194 * 117.00380 * 180.02562 * 14 12 11 16 16 H 1.08996 * 110.89830 * 32.08700 * 15 14 12 17 17 C 1.54999 * 110.83318 * 268.54253 * 15 14 12 18 18 C 1.54354 * 104.99625 * 263.91382 * 17 15 14 19 19 N 1.46930 * 106.65776 * 3.15953 * 18 17 15 20 20 C 1.33554 * 147.62593 * 148.35817 * 19 18 17 21 21 O 1.21505 * 123.51454 * 23.25950 * 20 19 18 22 22 O 1.34206 * 112.97696 * 203.23435 * 20 19 18 23 23 C 1.45983 * 109.21399 * 348.90547 * 22 20 19 24 24 C 1.48819 * 105.06460 * 331.42654 * 19 18 17 25 25 H 1.08997 * 113.11058 * 280.24206 * 24 19 18 26 26 H 0.97002 * 119.99518 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46668 * 59.99750 * 9 7 2 28 28 H 1.09002 * 109.47165 * 300.00731 * 9 7 2 29 29 H 1.08996 * 109.46953 * 59.99797 * 10 9 7 30 30 H 1.09003 * 109.46600 * 300.00052 * 10 9 7 31 31 H 1.09005 * 109.47191 * 59.99482 * 11 10 9 32 32 H 1.09002 * 109.46928 * 300.00166 * 11 10 9 33 33 H 1.09002 * 110.35419 * 145.00267 * 17 15 14 34 34 H 1.08997 * 110.35288 * 22.82324 * 17 15 14 35 35 H 1.08996 * 110.02100 * 122.46218 * 18 17 15 36 36 H 1.09000 * 110.02068 * 243.86029 * 18 17 15 37 37 H 1.08998 * 110.58878 * 238.97021 * 23 22 20 38 38 H 1.09002 * 110.59344 * 116.04629 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0027 11 6 1.4801 -4.9871 0.0033 12 6 2.4592 -6.1326 0.0037 13 8 3.6472 -5.9119 0.0031 14 8 2.0118 -7.3981 0.0037 15 6 3.0118 -8.4509 0.0046 16 1 3.9047 -8.1385 0.5461 17 6 3.3657 -8.8763 -1.4432 18 6 2.4850 -10.1127 -1.7228 19 7 1.6415 -10.3062 -0.5354 20 6 0.4731 -10.7185 -0.0368 21 8 -0.2505 -11.5180 -0.5967 22 8 0.1819 -10.1581 1.1473 23 6 1.3619 -9.4635 1.6533 24 6 2.4358 -9.7571 0.5970 25 1 3.2028 -10.4441 0.9544 26 1 -0.4849 0.8401 -0.0004 27 1 0.6239 -2.5574 -0.8880 28 1 0.6245 -2.5563 0.8919 29 1 2.8717 -3.6036 0.8926 30 1 2.8717 -3.6052 -0.8873 31 1 0.8536 -5.0454 -0.8869 32 1 0.8531 -5.0443 0.8931 33 1 4.4213 -9.1389 -1.5139 34 1 3.1274 -8.0751 -2.1427 35 1 1.8612 -9.9361 -2.5990 36 1 3.1126 -10.9897 -1.8817 37 1 1.6574 -9.8658 2.6223 38 1 1.1755 -8.3918 1.7228 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893623508.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:08 Heat of formation + Delta-G solvation = -147.382203 kcal Electronic energy + Delta-G solvation = -22224.151054 eV Core-core repulsion = 18646.541116 eV Total energy + Delta-G solvation = -3577.609938 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.22796 -40.44674 -38.05535 -37.18772 -36.09877 -34.40973 -32.23315 -31.60443 -30.81925 -28.30834 -26.67304 -24.38066 -23.67238 -22.24065 -21.37451 -20.61682 -19.96154 -18.23965 -17.52986 -17.25355 -17.05948 -16.36435 -16.30909 -15.70606 -15.37442 -15.22467 -14.48492 -14.40705 -14.02130 -13.86238 -13.52111 -13.26698 -12.76668 -12.55182 -12.35140 -12.02958 -11.81376 -11.58452 -11.51835 -11.03184 -10.90930 -10.90297 -10.78334 -10.76610 -10.61609 -10.37975 -9.82847 -9.48555 -9.38926 -9.13949 -8.39647 -6.04587 -4.06930 2.03228 2.25313 2.32461 2.43072 3.14874 3.29110 3.36834 3.41374 3.57907 3.79464 4.02257 4.34799 4.42265 4.46616 4.52987 4.67076 4.87000 5.02175 5.04662 5.16075 5.22847 5.31676 5.37550 5.47732 5.49051 5.58644 5.96916 6.03724 6.34135 6.51373 6.71493 6.97963 7.12140 7.60585 7.71211 7.72442 7.78827 7.94647 8.36656 9.00020 9.57650 11.06800 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.033185 B = 0.003001 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.556281 B = 9328.828266 C = 9696.347547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.020 3.980 10 C -0.099 4.099 11 C -0.112 4.112 12 C 0.462 3.538 13 O -0.502 6.502 14 O -0.350 6.350 15 C 0.079 3.921 16 H 0.112 0.888 17 C -0.151 4.151 18 C 0.159 3.841 19 N -0.643 5.643 20 C 0.681 3.319 21 O -0.514 6.514 22 O -0.322 6.322 23 C 0.045 3.955 24 C 0.055 3.945 25 H 0.131 0.869 26 H 0.260 0.740 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.289 -21.193 1.054 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.137 4.137 11 C -0.150 4.150 12 C 0.306 3.694 13 O -0.388 6.388 14 O -0.268 6.268 15 C 0.022 3.978 16 H 0.130 0.870 17 C -0.189 4.189 18 C 0.040 3.960 19 N -0.393 5.393 20 C 0.436 3.564 21 O -0.398 6.398 22 O -0.232 6.232 23 C -0.030 4.030 24 C -0.051 4.051 25 H 0.148 0.852 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.731 -21.558 0.753 22.597 hybrid contribution 0.714 1.008 -0.036 1.236 sum 7.445 -20.550 0.718 21.869 Atomic orbital electron populations 1.69971 1.06047 1.26593 1.50844 1.25025 0.94868 0.99329 0.95260 0.86523 0.80151 0.83674 0.77596 1.19693 1.20994 1.20991 1.21254 0.93179 0.90861 1.50598 0.92489 1.19133 0.93881 0.91170 0.97496 1.21585 0.98963 0.91133 1.01983 1.21748 0.97311 0.90473 1.05461 1.24546 0.90329 0.83107 0.71459 1.90651 1.18381 1.84764 1.44987 1.86635 1.39898 1.15932 1.84305 1.23452 0.91748 0.85376 0.97200 0.87001 1.23282 1.00941 0.98153 0.96539 1.21775 0.91042 0.97529 0.85682 1.48921 1.15813 1.65086 1.09475 1.17554 0.79268 0.79734 0.79814 1.91042 1.53776 1.33210 1.61768 1.87513 1.36416 1.65156 1.34077 1.24139 0.81538 1.00388 0.96963 1.23954 0.96680 0.94830 0.89613 0.85199 0.92997 0.96341 0.96324 0.92368 0.92419 0.87978 0.87933 0.88107 0.88898 0.89675 0.90274 0.87283 0.86485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.10 -1.94 4.44 -26.73 -0.12 -2.06 16 11 C -0.11 -1.68 5.81 -27.89 -0.16 -1.85 16 12 C 0.46 6.35 7.96 36.00 0.29 6.64 16 13 O -0.50 -8.04 15.28 -18.75 -0.29 -8.33 16 14 O -0.35 -3.93 8.17 -39.26 -0.32 -4.25 16 15 C 0.08 0.64 3.12 -24.86 -0.08 0.56 16 16 H 0.11 0.85 7.32 -51.93 -0.38 0.47 16 17 C -0.15 -1.01 6.73 -24.97 -0.17 -1.18 16 18 C 0.16 1.12 7.60 -3.10 -0.02 1.10 16 19 N -0.64 -6.34 3.99 -168.23 -0.67 -7.01 16 20 C 0.68 9.09 9.06 53.51 0.48 9.58 16 21 O -0.51 -8.81 18.04 -19.06 -0.34 -9.16 16 22 O -0.32 -3.88 11.14 -38.92 -0.43 -4.31 16 23 C 0.04 0.34 7.69 37.40 0.29 0.63 16 24 C 0.06 0.38 4.07 -65.59 -0.27 0.11 16 25 H 0.13 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 30 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 31 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.12 0.95 6.45 -51.93 -0.34 0.61 16 LS Contribution 324.17 15.07 4.89 4.89 Total: -1.00 -35.06 324.17 -7.08 -42.14 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -5.32 Total: -5.29 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -0.31 Total: 0.61 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.07 Total: -32.66 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -1.38 Total: -26.05 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.06 -7.08 -42.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893623508.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.242 kcal (2) G-P(sol) polarization free energy of solvation -35.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds