Wall clock time and date at job start Tue Mar 31 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 120.00155 * 2 1 4 4 N 1.46891 * 109.47630 * 124.20357 * 3 2 1 5 5 C 1.46900 * 111.00540 * 163.59419 * 4 3 2 6 6 C 1.50707 * 109.46872 * 293.95482 * 5 4 3 7 7 H 1.08002 * 119.99826 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99881 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00284 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99646 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47174 * 90.00356 * 10 8 6 12 12 H 1.48501 * 109.46890 * 209.99742 * 10 8 6 13 13 H 1.48495 * 109.47290 * 329.99737 * 10 8 6 14 14 C 1.46904 * 110.99891 * 287.54810 * 4 3 2 15 15 C 1.50700 * 109.47118 * 164.12326 * 14 4 3 16 16 C 1.35379 * 126.13350 * 277.09194 * 15 14 4 17 17 Cl 1.73602 * 126.04351 * 0.04416 * 16 15 14 18 18 C 1.39926 * 107.91067 * 180.02562 * 16 15 14 19 19 C 1.50693 * 125.89717 * 179.97438 * 18 16 15 20 20 N 1.30860 * 108.20792 * 0.02562 * 18 16 15 21 21 N 1.35043 * 126.14066 * 96.78668 * 15 14 4 22 22 C 1.46498 * 126.03497 * 359.96553 * 21 15 14 23 23 H 1.07999 * 120.00136 * 174.92629 * 1 2 3 24 24 H 1.07997 * 119.99911 * 354.92603 * 1 2 3 25 25 H 1.08002 * 119.99667 * 179.97438 * 2 1 3 26 26 H 1.09006 * 109.47435 * 4.19853 * 3 2 1 27 27 H 1.09001 * 109.47038 * 244.20755 * 3 2 1 28 28 H 1.09000 * 109.47178 * 53.95106 * 5 4 3 29 29 H 1.08993 * 109.47417 * 173.95174 * 5 4 3 30 30 H 0.97001 * 120.00442 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.46877 * 284.11893 * 14 4 3 32 32 H 1.08993 * 109.47516 * 44.11891 * 14 4 3 33 33 H 1.09003 * 109.47264 * 89.99754 * 19 18 16 34 34 H 1.08999 * 109.47343 * 210.00452 * 19 18 16 35 35 H 1.09002 * 109.47090 * 329.99858 * 19 18 16 36 36 H 1.09003 * 109.47630 * 89.99798 * 22 21 15 37 37 H 1.09005 * 109.47259 * 210.00169 * 22 21 15 38 38 H 1.09003 * 109.47130 * 329.99957 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9826 1.3399 1.1453 5 6 3.9961 2.3896 0.9754 6 6 4.8877 2.0432 -0.1892 7 1 4.7185 1.1340 -0.7470 8 6 5.9192 2.8870 -0.5426 9 7 6.1249 3.9944 0.1364 10 14 7.0247 2.4573 -1.9857 11 1 6.4580 3.0327 -3.2319 12 1 8.3807 3.0167 -1.7543 13 1 7.1143 0.9809 -2.1182 14 6 2.2476 1.5168 2.4049 15 6 3.1440 1.1631 3.5636 16 6 3.3807 -0.0823 4.0385 17 17 2.7056 -1.5570 3.4195 18 6 4.2661 0.0293 5.1163 19 6 4.7995 -1.1119 5.9434 20 7 4.5502 1.2958 5.2827 21 7 3.8597 2.0310 4.3107 22 6 3.9030 3.4851 4.1378 23 1 -0.5400 -0.9316 -0.0827 24 1 -0.5400 0.9316 0.0827 25 1 1.8500 -0.9354 0.0004 26 1 1.3577 2.1323 0.0752 27 1 2.6325 1.3961 -0.9253 28 1 3.5034 3.3430 0.7848 29 1 4.5961 2.4657 1.8822 30 1 6.8509 4.5879 -0.1120 31 1 1.9282 2.5550 2.4964 32 1 1.3734 0.8659 2.4100 33 1 5.7235 -1.4819 5.4991 34 1 4.9974 -0.7643 6.9573 35 1 4.0631 -1.9151 5.9720 36 1 3.1195 3.9461 4.7393 37 1 4.8751 3.8603 4.4580 38 1 3.7467 3.7310 3.0874 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894585268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:26 Heat of formation + Delta-G solvation = 93.238441 kcal Electronic energy + Delta-G solvation = -20630.343106 eV Core-core repulsion = 17536.169177 eV Total energy + Delta-G solvation = -3094.173928 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.04625 -37.24330 -35.94283 -33.82219 -33.15148 -32.36766 -30.47757 -29.21167 -27.31381 -26.12004 -25.05701 -23.79522 -21.24515 -19.91683 -19.29474 -19.08765 -16.75304 -16.34457 -15.57767 -15.05622 -14.81291 -14.41619 -14.18623 -13.70552 -13.44211 -13.25630 -13.15098 -12.73301 -12.42122 -12.21225 -12.09315 -11.91660 -11.72125 -11.49972 -11.15862 -11.03381 -10.87394 -10.80485 -10.72620 -10.34286 -10.04676 -9.96643 -9.35805 -9.01453 -8.77758 -8.50635 -7.89771 -7.42885 -6.11946 -4.12210 2.05841 2.41441 2.65658 2.90078 3.21682 3.27370 3.34349 3.39259 4.37105 4.76407 4.83764 4.97944 5.22617 5.25844 5.42646 5.46335 5.49638 5.51176 5.59762 5.76920 5.80471 5.90347 5.93478 5.99193 6.04181 6.30938 6.36580 6.46646 6.74943 6.92293 7.00031 7.11507 7.21648 7.24444 7.69876 7.92869 7.95330 8.05210 8.40148 8.94309 9.52375 10.99098 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.013041 B = 0.006831 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.593786 B = 4097.928156 C = 5064.565783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.119 4.119 3 C 0.085 3.915 4 N -0.521 5.521 5 C 0.188 3.812 6 C -0.507 4.507 7 H 0.065 0.935 8 C 0.058 3.942 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.272 1.272 14 C 0.112 3.888 15 C 0.132 3.868 16 C -0.173 4.173 17 Cl -0.047 7.047 18 C 0.081 3.919 19 C -0.070 4.070 20 N -0.291 5.291 21 N -0.356 5.356 22 C 0.098 3.902 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.110 0.890 26 H 0.027 0.973 27 H 0.101 0.899 28 H -0.009 1.009 29 H 0.035 0.965 30 H 0.262 0.738 31 H 0.037 0.963 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.492 -5.693 7.410 12.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.137 4.137 3 C -0.043 4.043 4 N -0.246 5.246 5 C 0.063 3.937 6 C -0.546 4.546 7 H 0.083 0.917 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.197 1.197 14 C -0.017 4.017 15 C 0.002 3.998 16 C -0.211 4.211 17 Cl -0.019 7.019 18 C -0.085 4.085 19 C -0.128 4.128 20 N -0.114 5.114 21 N -0.137 5.137 22 C -0.043 4.043 23 H 0.109 0.891 24 H 0.107 0.893 25 H 0.128 0.872 26 H 0.045 0.955 27 H 0.119 0.881 28 H 0.008 0.992 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.505 -5.062 8.054 12.117 hybrid contribution -0.137 0.099 -1.383 1.394 sum -7.642 -4.962 6.671 11.293 Atomic orbital electron populations 1.23696 0.95962 1.01076 1.04965 1.23138 0.95248 0.99495 0.95831 1.21231 0.93955 0.92800 0.96288 1.62033 1.13281 1.50832 0.98427 1.19907 0.88914 0.86684 0.98167 1.21114 1.13079 1.06853 1.13516 0.91667 1.24951 0.97449 0.94963 0.97031 1.69919 1.31584 1.11998 1.40296 0.86504 0.79842 0.78817 0.82349 1.20686 1.21264 1.19701 1.20641 0.93970 0.99470 0.87664 1.20638 0.95865 0.89016 0.94250 1.20109 1.10021 0.87570 1.03438 1.98272 1.84188 1.32323 1.87111 1.22130 0.96690 0.93512 0.96193 1.20153 1.01325 0.93251 0.98116 1.77325 1.18787 1.03061 1.12247 1.48088 1.34432 1.07034 1.24144 1.22049 1.04010 0.73803 1.04423 0.89087 0.89262 0.87153 0.95521 0.88076 0.99171 0.94695 0.92890 0.94452 0.88942 0.90345 0.90965 0.90433 0.91196 0.88939 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.90 14.32 29.01 0.42 -2.49 16 2 C -0.12 -1.84 8.79 -36.03 -0.32 -2.16 16 3 C 0.08 1.54 5.26 -4.98 -0.03 1.51 16 4 N -0.52 -10.60 4.38 -238.97 -1.05 -11.65 16 5 C 0.19 4.57 3.58 -4.97 -0.02 4.55 16 6 C -0.51 -13.70 8.28 -34.44 -0.29 -13.98 16 7 H 0.07 1.76 7.26 -52.49 -0.38 1.38 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -25.56 13.29 55.43 0.74 -24.82 16 10 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.11 1.99 4.75 -4.97 -0.02 1.96 16 15 C 0.13 2.46 5.64 -82.20 -0.46 1.99 16 16 C -0.17 -3.10 6.63 -39.97 -0.27 -3.36 16 17 Cl -0.05 -0.75 28.76 -51.86 -1.49 -2.24 16 18 C 0.08 1.40 7.22 -82.38 -0.59 0.80 16 19 C -0.07 -0.89 10.31 36.00 0.37 -0.52 16 20 N -0.29 -5.47 12.57 33.68 0.42 -5.04 16 21 N -0.36 -6.58 3.78 -63.84 -0.24 -6.82 16 22 C 0.10 1.55 10.45 59.85 0.63 2.17 16 23 H 0.09 1.06 8.06 -52.49 -0.42 0.64 16 24 H 0.09 1.12 7.84 -52.49 -0.41 0.71 16 25 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 26 H 0.03 0.46 7.70 -51.93 -0.40 0.06 16 27 H 0.10 2.04 6.59 -51.93 -0.34 1.70 16 28 H -0.01 -0.24 8.11 -51.93 -0.42 -0.66 16 29 H 0.04 0.91 5.46 -51.93 -0.28 0.63 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.04 0.63 7.33 -51.93 -0.38 0.25 16 32 H 0.09 1.51 7.17 -51.93 -0.37 1.13 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.10 1.76 5.46 -51.93 -0.28 1.48 16 LS Contribution 332.27 15.07 5.01 5.01 Total: -1.00 -29.96 332.27 -7.68 -37.63 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.36 Total: -0.34 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -0.68 Total: -8.04 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.13 Total: -48.34 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.49 Total: -2.24 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.96 -7.68 -37.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894585268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.873 kcal (2) G-P(sol) polarization free energy of solvation -29.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds