Wall clock time and date at job start Tue Mar 31 2020 06:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 120.00090 * 2 1 4 4 N 1.46904 * 109.47348 * 124.16169 * 3 2 1 5 5 C 1.46898 * 110.99687 * 301.54252 * 4 3 2 6 6 C 1.50707 * 109.46913 * 288.96515 * 5 4 3 7 7 H 1.07995 * 119.99621 * 354.86844 * 6 5 4 8 8 C 1.37876 * 120.00208 * 174.87409 * 6 5 4 9 9 N 1.31523 * 119.99542 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00251 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46798 * 89.99797 * 10 8 6 12 12 H 1.48497 * 109.47126 * 209.99772 * 10 8 6 13 13 H 1.48493 * 109.46995 * 329.99700 * 10 8 6 14 14 C 1.46901 * 110.99678 * 65.49114 * 4 3 2 15 15 C 1.50692 * 109.47206 * 66.04951 * 14 4 3 16 16 C 1.38232 * 120.00471 * 260.02085 * 15 14 4 17 17 C 1.38420 * 120.06935 * 179.97438 * 16 15 14 18 18 F 1.35092 * 119.95983 * 179.97438 * 17 16 15 19 19 C 1.38481 * 120.07180 * 359.97438 * 17 16 15 20 20 C 1.38291 * 120.00968 * 359.74998 * 19 17 16 21 21 F 1.35097 * 120.03517 * 180.25270 * 20 19 17 22 22 C 1.38600 * 120.00222 * 79.99661 * 15 14 4 23 23 O 1.35997 * 120.03480 * 0.02562 * 22 15 14 24 24 H 1.07995 * 120.00230 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.99783 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.00016 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47342 * 4.15894 * 3 2 1 28 28 H 1.09004 * 109.47599 * 244.16114 * 3 2 1 29 29 H 1.09007 * 109.47526 * 48.96005 * 5 4 3 30 30 H 1.08994 * 109.47376 * 168.96425 * 5 4 3 31 31 H 0.97000 * 119.99278 * 180.02562 * 9 8 6 32 32 H 1.09005 * 109.46965 * 306.04799 * 14 4 3 33 33 H 1.08998 * 109.46739 * 186.04975 * 14 4 3 34 34 H 1.07991 * 119.96467 * 359.95590 * 16 15 14 35 35 H 1.08000 * 119.99577 * 179.97438 * 19 17 16 36 36 H 0.96693 * 114.00289 * 89.99858 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9819 1.3403 1.1460 5 6 2.2515 1.1836 2.4109 6 6 1.4549 2.4323 2.6890 7 1 1.5517 3.2902 2.0401 8 6 0.6025 2.4795 3.7717 9 7 0.4844 1.4346 4.5615 10 14 -0.3843 4.0276 4.1168 11 1 -1.6877 3.9516 3.4092 12 1 -0.6206 4.1486 5.5778 13 1 0.3708 5.2130 3.6376 14 6 4.0292 0.3189 1.0129 15 6 4.9103 0.6532 -0.1630 16 6 4.7249 0.0079 -1.3713 17 6 5.5331 0.3143 -2.4524 18 9 5.3503 -0.3181 -3.6321 19 6 6.5289 1.2683 -2.3260 20 6 6.7135 1.9199 -1.1203 21 9 7.6814 2.8544 -0.9979 22 6 5.9065 1.6081 -0.0332 23 8 6.0897 2.2435 1.1552 24 1 -0.5400 -0.9352 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3576 2.1322 0.0745 28 1 2.6331 1.3959 -0.9249 29 1 1.5764 0.3309 2.3375 30 1 2.9606 1.0169 3.2217 31 1 -0.1155 1.4677 5.3230 32 1 3.5679 -0.6562 0.8557 33 1 4.6302 0.2942 1.9219 34 1 3.9488 -0.7363 -1.4718 35 1 7.1591 1.5062 -3.1702 36 1 6.7123 1.7993 1.7468 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894837135.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:45 Heat of formation + Delta-G solvation = -77.683538 kcal Electronic energy + Delta-G solvation = -22258.647774 eV Core-core repulsion = 18572.972681 eV Total energy + Delta-G solvation = -3685.675093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.06426 -48.99739 -39.82257 -37.22140 -36.44953 -32.80914 -32.66183 -30.98123 -29.32572 -27.28914 -26.36665 -24.09034 -22.82001 -21.85636 -20.88754 -18.97920 -18.48859 -17.63971 -17.48381 -16.26029 -16.18531 -15.91493 -15.48895 -15.22140 -14.99113 -14.72991 -14.42311 -14.30357 -13.85116 -13.63777 -13.44435 -12.76212 -12.38070 -12.16268 -11.93803 -11.69243 -11.40588 -11.12304 -10.96496 -10.74959 -10.64876 -10.54269 -10.43690 -9.93785 -9.27076 -9.02223 -8.70786 -8.52855 -8.39804 -7.27175 -6.00376 -4.00529 0.83706 0.87907 2.86716 3.17288 3.32977 3.39547 3.44805 3.71652 4.05947 4.34012 4.44895 4.51955 4.76084 4.99589 5.12664 5.35531 5.48815 5.50417 5.55585 5.66581 5.77248 5.81308 5.88551 6.00198 6.12115 6.29739 6.40836 6.58781 6.65238 7.12806 7.21503 7.30989 7.41130 7.67922 7.82247 8.06043 8.16405 8.53203 9.07098 9.63175 11.10210 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.019773 B = 0.004963 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.732166 B = 5640.202561 C = 6518.872161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.184 4.184 3 C 0.087 3.913 4 N -0.515 5.515 5 C 0.192 3.808 6 C -0.499 4.499 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.894 3.106 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.092 3.908 15 C -0.035 4.035 16 C -0.144 4.144 17 C 0.116 3.884 18 F -0.134 7.134 19 C -0.187 4.187 20 C 0.098 3.902 21 F -0.128 7.128 22 C 0.092 3.908 23 O -0.464 6.464 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.007 0.993 30 H 0.024 0.976 31 H 0.260 0.740 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.654 -4.629 -11.744 16.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.203 4.203 3 C -0.041 4.041 4 N -0.238 5.238 5 C 0.068 3.932 6 C -0.538 4.538 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.036 4.036 15 C -0.036 4.036 16 C -0.164 4.164 17 C 0.097 3.903 18 F -0.113 7.113 19 C -0.206 4.206 20 C 0.078 3.922 21 F -0.106 7.106 22 C 0.045 3.955 23 O -0.273 6.273 24 H 0.103 0.897 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.025 0.975 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 10.430 -3.783 -11.792 16.191 hybrid contribution -0.531 -0.322 0.298 0.689 sum 9.899 -4.105 -11.494 15.715 Atomic orbital electron populations 1.23702 0.96038 1.01187 1.00265 1.23495 0.96757 0.99580 1.00507 1.21291 0.94717 0.94529 0.93536 1.62468 1.12632 1.44369 1.04291 1.19790 0.92262 0.97190 0.83980 1.21099 1.22648 0.99320 1.10739 0.92000 1.24941 0.97031 0.96305 0.96171 1.69957 1.38228 1.29317 1.16442 0.86552 0.80288 0.83667 0.77266 1.20828 1.21343 1.19781 1.20942 0.93715 0.94598 0.94342 1.20118 0.94961 0.92744 0.95797 1.21076 1.00881 1.03021 0.91413 1.17174 0.96932 0.94352 0.81878 1.91513 1.94603 1.80460 1.44676 1.20842 1.01783 0.99737 0.98281 1.17707 0.88975 0.90989 0.94504 1.91512 1.60248 1.62400 1.96444 1.18222 0.95609 0.94841 0.86859 1.85051 1.67050 1.50136 1.25053 0.89664 0.88437 0.88747 0.89680 0.92182 0.97529 0.95813 0.93056 0.94047 0.89824 0.83900 0.83489 0.75682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 14.32 29.01 0.42 -2.59 16 2 C -0.18 -3.19 7.39 -36.03 -0.27 -3.46 16 3 C 0.09 1.63 5.43 -4.97 -0.03 1.61 16 4 N -0.52 -10.49 4.66 -238.96 -1.11 -11.61 16 5 C 0.19 4.78 4.57 -4.97 -0.02 4.75 16 6 C -0.50 -13.74 8.53 -34.44 -0.29 -14.03 16 7 H 0.06 1.73 7.61 -52.49 -0.40 1.33 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 10 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.09 1.50 4.60 -4.98 -0.02 1.48 16 15 C -0.03 -0.49 4.59 -104.49 -0.48 -0.97 16 16 C -0.14 -1.81 8.55 -39.52 -0.34 -2.14 16 17 C 0.12 1.40 7.30 -39.43 -0.29 1.11 16 18 F -0.13 -1.61 17.26 2.25 0.04 -1.57 16 19 C -0.19 -2.16 10.00 -39.47 -0.39 -2.56 16 20 C 0.10 1.29 7.31 -39.31 -0.29 1.00 16 21 F -0.13 -1.73 17.11 2.25 0.04 -1.69 16 22 C 0.09 1.30 6.68 -39.19 -0.26 1.04 16 23 O -0.46 -6.81 12.60 -19.73 -0.25 -7.06 16 24 H 0.08 1.31 8.06 -52.49 -0.42 0.89 16 25 H 0.10 1.74 7.84 -52.49 -0.41 1.33 16 26 H 0.09 1.50 6.84 -52.49 -0.36 1.14 16 27 H 0.08 1.76 7.01 -51.93 -0.36 1.40 16 28 H 0.06 1.02 6.33 -51.93 -0.33 0.69 16 29 H 0.01 0.18 6.68 -51.93 -0.35 -0.16 16 30 H 0.02 0.63 7.83 -51.93 -0.41 0.22 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 32 H 0.04 0.64 6.27 -51.93 -0.33 0.31 16 33 H 0.08 1.34 7.58 -51.93 -0.39 0.94 16 34 H 0.14 1.63 8.04 -52.49 -0.42 1.21 16 35 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.39 3.70 9.06 45.56 0.41 4.11 16 LS Contribution 316.02 15.07 4.76 4.76 Total: -1.00 -30.62 316.02 -6.49 -37.11 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -3.32 Total: 2.28 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -2.36 Total: -13.28 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: -0.38 Total: -37.13 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.25 Total: -7.06 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.08 Total: -3.26 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.62 -6.49 -37.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894837135.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.573 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds