Wall clock time and date at job start Tue Mar 31 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37098 * 120.00061 * 2 1 4 4 H 1.07993 * 119.99690 * 183.33465 * 3 2 1 5 5 C 1.38945 * 119.99875 * 3.32138 * 3 2 1 6 6 N 1.31409 * 120.00276 * 5.54679 * 5 3 2 7 7 Si 1.86805 * 119.99901 * 185.54297 * 5 3 2 8 8 H 1.48497 * 109.47185 * 60.00333 * 7 5 3 9 9 H 1.48507 * 109.46932 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47083 * 300.00208 * 7 5 3 11 11 C 1.34782 * 119.99748 * 179.71067 * 2 1 3 12 12 O 1.21294 * 119.99565 * 175.81818 * 11 2 1 13 13 C 1.50697 * 120.00144 * 355.82474 * 11 2 1 14 14 C 1.52994 * 109.47480 * 66.73636 * 13 11 2 15 15 C 1.53002 * 109.46815 * 186.74156 * 13 11 2 16 16 C 1.50707 * 109.46724 * 306.73530 * 13 11 2 17 17 C 1.38225 * 119.98924 * 353.56525 * 16 13 11 18 18 C 1.38189 * 120.04964 * 179.72367 * 17 16 13 19 19 C 1.38492 * 120.02419 * 0.55154 * 18 17 16 20 20 F 1.35099 * 120.01465 * 179.74611 * 19 18 17 21 21 C 1.38404 * 119.97308 * 359.72111 * 19 18 17 22 22 C 1.38433 * 119.95006 * 0.02562 * 21 19 18 23 23 F 1.35102 * 120.01186 * 179.97438 * 22 21 19 24 24 H 1.08994 * 109.47020 * 176.00497 * 1 2 3 25 25 H 1.08993 * 109.47180 * 296.01106 * 1 2 3 26 26 H 1.09001 * 109.46276 * 56.01078 * 1 2 3 27 27 H 0.96998 * 120.00168 * 179.97438 * 6 5 3 28 28 H 1.08998 * 109.47132 * 68.62951 * 14 13 11 29 29 H 1.08993 * 109.47536 * 188.63196 * 14 13 11 30 30 H 1.09003 * 109.46945 * 308.63169 * 14 13 11 31 31 H 1.08996 * 109.47598 * 65.32291 * 15 13 11 32 32 H 1.08999 * 109.46531 * 185.32332 * 15 13 11 33 33 H 1.08998 * 109.46807 * 305.31487 * 15 13 11 34 34 H 1.08000 * 119.97654 * 359.97438 * 17 16 13 35 35 H 1.08004 * 119.98922 * 180.25275 * 18 17 16 36 36 H 1.08001 * 120.02016 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2291 1.1880 -0.0544 5 6 1.4575 2.3896 0.0697 6 7 0.1552 2.3881 0.2453 7 14 2.3772 4.0081 -0.0861 8 1 3.0610 4.0641 -1.4030 9 1 1.4167 5.1355 0.0218 10 1 3.3849 4.1113 0.9998 11 6 2.1389 -1.1673 0.0059 12 8 3.3494 -1.1690 -0.0707 13 6 1.3884 -2.4701 0.1075 14 6 0.5581 -2.6806 -1.1602 15 6 2.3841 -3.6214 0.2622 16 6 0.4750 -2.4315 1.3056 17 6 0.5279 -1.3626 2.1805 18 6 -0.3130 -1.3232 3.2764 19 6 -1.2018 -2.3602 3.5055 20 9 -2.0203 -2.3239 4.5798 21 6 -1.2517 -3.4336 2.6333 22 6 -0.4125 -3.4695 1.5329 23 9 -0.4597 -4.5170 0.6809 24 1 -0.3633 -1.0251 -0.0716 25 1 -0.3633 0.4506 0.9235 26 1 -0.3632 0.5745 -0.8521 27 1 -0.3285 3.2275 0.2943 28 1 1.2234 -2.8615 -2.0044 29 1 -0.0995 -3.5393 -1.0254 30 1 -0.0412 -1.7910 -1.3539 31 1 2.9096 -3.5223 1.2120 32 1 1.8483 -4.5704 0.2407 33 1 3.1036 -3.5919 -0.5560 34 1 1.2241 -0.5558 2.0053 35 1 -0.2737 -0.4856 3.9571 36 1 -1.9448 -4.2426 2.8110 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900452995.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:02 Heat of formation + Delta-G solvation = -67.728630 kcal Electronic energy + Delta-G solvation = -23537.928459 eV Core-core repulsion = 19852.685044 eV Total energy + Delta-G solvation = -3685.243416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.91705 -48.84003 -40.25679 -37.79054 -35.07078 -34.43659 -31.61840 -30.58232 -29.16401 -27.25458 -26.04969 -24.96046 -23.06483 -22.89215 -21.29581 -18.50117 -18.01580 -17.07143 -16.86155 -16.48444 -15.82784 -15.50652 -15.20284 -15.08257 -14.57815 -14.36451 -14.26600 -14.11324 -13.19391 -13.13797 -12.74311 -12.67070 -12.48918 -11.96683 -11.66771 -11.61134 -11.44696 -11.22040 -11.04628 -10.92856 -10.86330 -10.57889 -10.48098 -10.40181 -10.09957 -9.15501 -8.72800 -8.41682 -8.29316 -7.92446 -6.29454 -3.88673 1.15013 1.24624 3.13109 3.20429 3.24113 3.58390 3.74538 4.01986 4.05906 4.57040 4.68207 4.79583 4.90168 5.10055 5.11895 5.29785 5.46278 5.56257 5.70814 5.90646 6.01507 6.04411 6.08804 6.16553 6.21129 6.33628 6.39322 6.46020 6.52248 6.65829 6.68134 6.98022 7.03964 7.35744 7.50129 7.98275 8.40533 9.10776 9.35565 9.88667 10.62710 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.017974 B = 0.007045 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.435089 B = 3973.559040 C = 4973.146603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.444 5.444 3 C -0.306 4.306 4 H 0.105 0.895 5 C 0.029 3.971 6 N -0.885 5.885 7 Si 0.930 3.070 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.448 3.552 12 O -0.587 6.587 13 C -0.031 4.031 14 C -0.160 4.160 15 C -0.119 4.119 16 C -0.106 4.106 17 C -0.046 4.046 18 C -0.158 4.158 19 C 0.118 3.882 20 F -0.138 7.138 21 C -0.199 4.199 22 C 0.129 3.871 23 F -0.129 7.129 24 H 0.040 0.960 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.267 0.733 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.165 0.835 35 H 0.141 0.859 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.106 -8.626 3.320 10.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.162 5.162 3 C -0.434 4.434 4 H 0.123 0.877 5 C -0.173 4.173 6 N -0.526 5.526 7 Si 0.757 3.243 8 H -0.199 1.199 9 H -0.209 1.209 10 H -0.198 1.198 11 C 0.236 3.764 12 O -0.472 6.472 13 C -0.035 4.035 14 C -0.217 4.217 15 C -0.177 4.177 16 C -0.108 4.108 17 C -0.064 4.064 18 C -0.177 4.177 19 C 0.099 3.901 20 F -0.117 7.117 21 C -0.219 4.219 22 C 0.109 3.891 23 F -0.108 7.108 24 H 0.058 0.942 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.182 0.818 35 H 0.159 0.841 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.715 -8.472 3.296 10.240 hybrid contribution -0.111 0.788 -0.027 0.796 sum -4.825 -7.684 3.269 9.645 Atomic orbital electron populations 1.22354 0.80432 0.97209 1.04531 1.43797 1.05978 1.04718 1.61754 1.19790 0.93307 0.81954 1.48337 0.87737 1.25292 0.95781 0.99664 0.96551 1.70145 1.06513 1.27302 1.48596 0.85931 0.78800 0.80425 0.79164 1.19916 1.20912 1.19833 1.19522 0.87692 0.84136 0.85093 1.90515 1.13870 1.86665 1.56119 1.19579 0.94577 0.96697 0.92604 1.22319 1.00141 1.03362 0.95847 1.21595 0.97866 0.95146 1.03060 1.19880 0.97992 0.94378 0.98531 1.21634 0.97104 0.97010 0.90660 1.21227 0.97278 0.98924 1.00277 1.17302 0.91823 0.95649 0.85368 1.91492 1.70674 1.96557 1.52934 1.20822 1.03895 1.00869 0.96264 1.16992 0.97466 0.85399 0.89221 1.91429 1.95512 1.55261 1.68559 0.94215 0.90301 0.91810 0.92217 0.91855 0.91219 0.90686 0.92428 0.92609 0.91259 0.81814 0.84138 0.83937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.12 5.71 59.85 0.34 2.46 16 2 N -0.44 -10.73 1.82 -122.20 -0.22 -10.95 16 3 C -0.31 -8.11 9.57 -14.94 -0.14 -8.25 16 4 H 0.10 2.92 7.17 -52.49 -0.38 2.54 16 5 C 0.03 0.74 5.43 -17.47 -0.09 0.64 16 6 N -0.88 -22.09 9.50 55.50 0.53 -21.56 16 7 Si 0.93 20.12 29.56 -169.99 -5.02 15.09 16 8 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 11 C 0.45 10.44 5.34 -10.98 -0.06 10.38 16 12 O -0.59 -15.66 15.46 5.55 0.09 -15.57 16 13 C -0.03 -0.58 0.49 -156.81 -0.08 -0.65 16 14 C -0.16 -2.66 7.96 37.15 0.30 -2.36 16 15 C -0.12 -2.04 7.67 37.16 0.29 -1.75 16 16 C -0.11 -1.83 3.17 -104.54 -0.33 -2.16 16 17 C -0.05 -0.82 6.34 -39.60 -0.25 -1.07 16 18 C -0.16 -2.47 10.03 -39.51 -0.40 -2.86 16 19 C 0.12 1.72 7.30 -39.43 -0.29 1.43 16 20 F -0.14 -1.96 17.27 2.25 0.04 -1.92 16 21 C -0.20 -2.74 10.01 -39.45 -0.39 -3.14 16 22 C 0.13 1.95 6.80 -39.43 -0.27 1.68 16 23 F -0.13 -1.87 13.41 2.25 0.03 -1.84 16 24 H 0.04 0.76 3.03 -51.93 -0.16 0.61 16 25 H 0.08 1.79 5.90 -51.93 -0.31 1.48 16 26 H 0.06 1.49 7.18 -51.93 -0.37 1.12 16 27 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 28 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 29 H 0.07 1.03 5.60 -51.93 -0.29 0.74 16 30 H 0.07 1.30 5.19 -51.93 -0.27 1.03 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.82 6.94 -51.93 -0.36 0.46 16 33 H 0.07 1.22 7.84 -51.93 -0.41 0.81 16 34 H 0.16 3.45 5.29 -52.49 -0.28 3.17 16 35 H 0.14 2.00 8.06 -52.48 -0.42 1.58 16 36 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 288.97 15.07 4.35 4.35 Total: -1.00 -27.52 288.97 -5.23 -32.75 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -3.64 Total: 5.31 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -1.38 Total: -5.66 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.30 Total: -32.51 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.09 Total: -15.57 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.07 Total: -3.76 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.52 -5.23 -32.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900452995.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.977 kcal (2) G-P(sol) polarization free energy of solvation -27.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds