Wall clock time and date at job start Tue Mar 31 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37098 * 120.00061 * 2 1 4 4 H 1.07993 * 119.99690 * 183.33465 * 3 2 1 5 5 C 1.38945 * 119.99875 * 3.32138 * 3 2 1 6 6 N 1.31409 * 120.00276 * 5.54679 * 5 3 2 7 7 Si 1.86805 * 119.99901 * 185.54297 * 5 3 2 8 8 H 1.48497 * 109.47185 * 60.00333 * 7 5 3 9 9 H 1.48507 * 109.46932 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47083 * 300.00208 * 7 5 3 11 11 C 1.34782 * 119.99748 * 179.71067 * 2 1 3 12 12 O 1.21294 * 119.99565 * 175.81818 * 11 2 1 13 13 C 1.50697 * 120.00144 * 355.82474 * 11 2 1 14 14 C 1.52994 * 109.47480 * 66.73636 * 13 11 2 15 15 C 1.53002 * 109.46815 * 186.74156 * 13 11 2 16 16 C 1.50707 * 109.46724 * 306.73530 * 13 11 2 17 17 C 1.38225 * 119.98924 * 353.56525 * 16 13 11 18 18 C 1.38189 * 120.04964 * 179.72367 * 17 16 13 19 19 C 1.38492 * 120.02419 * 0.55154 * 18 17 16 20 20 F 1.35099 * 120.01465 * 179.74611 * 19 18 17 21 21 C 1.38404 * 119.97308 * 359.72111 * 19 18 17 22 22 C 1.38433 * 119.95006 * 0.02562 * 21 19 18 23 23 F 1.35102 * 120.01186 * 179.97438 * 22 21 19 24 24 H 1.08994 * 109.47020 * 176.00497 * 1 2 3 25 25 H 1.08993 * 109.47180 * 296.01106 * 1 2 3 26 26 H 1.09001 * 109.46276 * 56.01078 * 1 2 3 27 27 H 0.96998 * 120.00168 * 179.97438 * 6 5 3 28 28 H 1.08998 * 109.47132 * 68.62951 * 14 13 11 29 29 H 1.08993 * 109.47536 * 188.63196 * 14 13 11 30 30 H 1.09003 * 109.46945 * 308.63169 * 14 13 11 31 31 H 1.08996 * 109.47598 * 65.32291 * 15 13 11 32 32 H 1.08999 * 109.46531 * 185.32332 * 15 13 11 33 33 H 1.08998 * 109.46807 * 305.31487 * 15 13 11 34 34 H 1.08000 * 119.97654 * 359.97438 * 17 16 13 35 35 H 1.08004 * 119.98922 * 180.25275 * 18 17 16 36 36 H 1.08001 * 120.02016 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2291 1.1880 -0.0544 5 6 1.4575 2.3896 0.0697 6 7 0.1552 2.3881 0.2453 7 14 2.3772 4.0081 -0.0861 8 1 3.0610 4.0641 -1.4030 9 1 1.4167 5.1355 0.0218 10 1 3.3849 4.1113 0.9998 11 6 2.1389 -1.1673 0.0059 12 8 3.3494 -1.1690 -0.0707 13 6 1.3884 -2.4701 0.1075 14 6 0.5581 -2.6806 -1.1602 15 6 2.3841 -3.6214 0.2622 16 6 0.4750 -2.4315 1.3056 17 6 0.5279 -1.3626 2.1805 18 6 -0.3130 -1.3232 3.2764 19 6 -1.2018 -2.3602 3.5055 20 9 -2.0203 -2.3239 4.5798 21 6 -1.2517 -3.4336 2.6333 22 6 -0.4125 -3.4695 1.5329 23 9 -0.4597 -4.5170 0.6809 24 1 -0.3633 -1.0251 -0.0716 25 1 -0.3633 0.4506 0.9235 26 1 -0.3632 0.5745 -0.8521 27 1 -0.3285 3.2275 0.2943 28 1 1.2234 -2.8615 -2.0044 29 1 -0.0995 -3.5393 -1.0254 30 1 -0.0412 -1.7910 -1.3539 31 1 2.9096 -3.5223 1.2120 32 1 1.8483 -4.5704 0.2407 33 1 3.1036 -3.5919 -0.5560 34 1 1.2241 -0.5558 2.0053 35 1 -0.2737 -0.4856 3.9571 36 1 -1.9448 -4.2426 2.8110 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900452995.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:02 Heat of formation + Delta-G solvation = -81.540751 kcal Electronic energy + Delta-G solvation = -23538.527398 eV Core-core repulsion = 19852.685044 eV Total energy + Delta-G solvation = -3685.842354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.09120 -49.99079 -41.83093 -39.28921 -36.91994 -36.02694 -33.51590 -31.85806 -30.44426 -28.86277 -27.69899 -26.76657 -24.51529 -24.16006 -22.79286 -20.14170 -19.25866 -18.96259 -18.24791 -17.97694 -17.01094 -16.95237 -16.60255 -16.34300 -16.16999 -15.94452 -15.88388 -15.44257 -14.74552 -14.56411 -14.36185 -14.20577 -13.74902 -13.69237 -13.34135 -12.96764 -12.93452 -12.70427 -12.64146 -12.54268 -12.38260 -12.24764 -12.11478 -11.95921 -11.78123 -11.04870 -10.28161 -10.00025 -9.84484 -9.57799 -8.22870 -5.90720 -0.09757 0.02277 1.37161 1.41195 1.50584 1.95477 2.24265 2.33250 2.81181 2.98118 3.10147 3.35791 3.50097 3.59323 3.78316 3.95739 4.07119 4.17584 4.23888 4.58609 4.65923 4.72236 4.78614 4.81409 4.84773 4.93591 5.00547 5.09932 5.14805 5.19417 5.29521 5.34804 5.44867 5.54190 5.75557 6.02912 6.46365 7.15242 7.46158 7.99797 8.66172 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.017974 B = 0.007045 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.435089 B = 3973.559040 C = 4973.146603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.451 5.451 3 C -0.344 4.344 4 H 0.078 0.922 5 C 0.002 3.998 6 N -0.891 5.891 7 Si 0.987 3.013 8 H -0.276 1.276 9 H -0.269 1.269 10 H -0.273 1.273 11 C 0.441 3.559 12 O -0.631 6.631 13 C -0.027 4.027 14 C -0.155 4.155 15 C -0.114 4.114 16 C -0.118 4.118 17 C -0.064 4.064 18 C -0.157 4.157 19 C 0.125 3.875 20 F -0.132 7.132 21 C -0.179 4.179 22 C 0.137 3.863 23 F -0.120 7.120 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.272 0.728 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.126 0.874 35 H 0.148 0.852 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.060 -9.928 3.827 12.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.169 5.169 3 C -0.471 4.471 4 H 0.095 0.905 5 C -0.200 4.200 6 N -0.530 5.530 7 Si 0.811 3.189 8 H -0.201 1.201 9 H -0.194 1.194 10 H -0.199 1.199 11 C 0.231 3.769 12 O -0.519 6.519 13 C -0.031 4.031 14 C -0.212 4.212 15 C -0.172 4.172 16 C -0.120 4.120 17 C -0.083 4.083 18 C -0.176 4.176 19 C 0.106 3.894 20 F -0.110 7.110 21 C -0.198 4.198 22 C 0.118 3.882 23 F -0.099 7.099 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.144 0.856 35 H 0.165 0.835 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.706 -9.778 3.807 12.453 hybrid contribution 0.480 1.167 -0.125 1.268 sum -6.226 -8.611 3.682 11.246 Atomic orbital electron populations 1.22178 0.79069 0.98476 1.02891 1.43916 1.06802 1.04514 1.61645 1.19715 0.92619 0.83813 1.51001 0.90451 1.25944 0.96648 1.01853 0.95543 1.70232 1.07040 1.28184 1.47591 0.85081 0.77916 0.77115 0.78746 1.20119 1.19386 1.19870 1.20416 0.87528 0.85542 0.83425 1.90470 1.16003 1.87622 1.57823 1.19543 0.95040 0.94040 0.94449 1.22302 1.00118 1.03951 0.94859 1.21577 0.97591 0.95899 1.02088 1.19727 0.98811 0.95355 0.98081 1.21241 0.97823 0.96803 0.92413 1.21243 0.97025 0.99735 0.99598 1.17227 0.91297 0.95363 0.85532 1.91517 1.70339 1.96504 1.52666 1.21085 1.03101 1.00995 0.94609 1.16822 0.96949 0.84811 0.89664 1.91449 1.95413 1.54650 1.68358 0.91415 0.91400 0.93852 0.91770 0.91626 0.88513 0.91669 0.93451 0.89549 0.92324 0.85613 0.83463 0.80503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.14 5.71 127.77 0.73 5.87 16 2 N -0.45 -22.67 1.82 -658.90 -1.20 -23.88 16 3 C -0.34 -19.06 9.57 84.04 0.80 -18.25 16 4 H 0.08 4.61 7.17 -2.91 -0.02 4.59 16 5 C 0.00 0.09 5.43 84.93 0.46 0.55 16 6 N -0.89 -44.88 9.50 21.66 0.21 -44.67 16 7 Si 0.99 41.72 29.56 68.60 2.03 43.75 16 8 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 9 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 11 C 0.44 21.34 5.34 87.66 0.47 21.81 16 12 O -0.63 -35.43 15.46 -3.07 -0.05 -35.47 16 13 C -0.03 -1.00 0.49 -53.67 -0.03 -1.03 16 14 C -0.16 -4.94 7.96 71.98 0.57 -4.36 16 15 C -0.11 -3.81 7.67 71.98 0.55 -3.25 16 16 C -0.12 -3.92 3.17 -19.81 -0.06 -3.99 16 17 C -0.06 -2.31 6.34 22.25 0.14 -2.17 16 18 C -0.16 -4.73 10.03 22.32 0.22 -4.51 16 19 C 0.13 3.27 7.30 22.37 0.16 3.43 16 20 F -0.13 -3.30 17.27 44.97 0.78 -2.52 16 21 C -0.18 -4.17 10.01 22.36 0.22 -3.95 16 22 C 0.14 3.69 6.80 22.37 0.15 3.84 16 23 F -0.12 -2.96 13.41 44.97 0.60 -2.36 16 24 H 0.07 2.58 3.03 -2.39 -0.01 2.58 16 25 H 0.07 3.14 5.90 -2.39 -0.01 3.12 16 26 H 0.04 2.06 7.18 -2.39 -0.02 2.04 16 27 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 28 H 0.06 2.04 8.13 -2.39 -0.02 2.02 16 29 H 0.10 2.54 5.60 -2.39 -0.01 2.53 16 30 H 0.06 2.19 5.19 -2.39 -0.01 2.18 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.09 2.31 6.94 -2.39 -0.02 2.30 16 33 H 0.06 2.06 7.84 -2.39 -0.02 2.04 16 34 H 0.13 5.57 5.29 -2.91 -0.02 5.56 16 35 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 36 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -61.04 288.97 7.89 -53.15 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 1.13 Total: 18.02 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 4.40 Total: -6.01 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: -1.00 Total: -68.55 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -0.05 Total: -35.47 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 1.38 Total: -4.89 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -61.04 7.89 -53.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900452995.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.392 kcal (2) G-P(sol) polarization free energy of solvation -61.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds