Wall clock time and date at job start Tue Mar 31 2020 06:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30842 * 125.89547 * 2 1 4 4 N 1.40087 * 108.22723 * 179.76492 * 3 2 1 5 5 C 1.46498 * 126.04185 * 180.30542 * 4 3 2 6 6 C 1.35049 * 107.92117 * 0.41957 * 4 3 2 7 7 C 1.50698 * 126.13505 * 179.84903 * 6 4 3 8 8 N 1.46904 * 109.47217 * 89.71202 * 7 6 4 9 9 C 1.46904 * 110.99787 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46936 * 184.37235 * 9 8 7 11 11 C 1.50702 * 115.54841 * 301.90436 * 10 9 8 12 12 H 1.08006 * 119.99589 * 95.21382 * 11 10 9 13 13 C 1.37870 * 120.00144 * 275.21363 * 11 10 9 14 14 N 1.31514 * 120.00201 * 7.19663 * 13 11 10 15 15 Si 1.86799 * 120.00259 * 187.20142 * 13 11 10 16 16 H 1.48500 * 109.47163 * 269.99741 * 15 13 11 17 17 H 1.48501 * 109.46945 * 29.99804 * 15 13 11 18 18 H 1.48502 * 109.47400 * 149.99795 * 15 13 11 19 19 C 1.53002 * 117.49994 * 87.57206 * 10 9 8 20 20 C 1.52996 * 117.49954 * 156.23249 * 10 9 8 21 21 C 1.35367 * 107.72745 * 359.58546 * 6 4 3 22 22 Cl 1.73602 * 126.04240 * 180.29643 * 21 6 4 23 23 H 1.08998 * 109.47658 * 269.97853 * 1 2 3 24 24 H 1.08999 * 109.46874 * 29.97777 * 1 2 3 25 25 H 1.09004 * 109.47286 * 149.97416 * 1 2 3 26 26 H 1.09006 * 109.47040 * 270.13548 * 5 4 3 27 27 H 1.09006 * 109.46907 * 30.13450 * 5 4 3 28 28 H 1.08994 * 109.47276 * 150.13464 * 5 4 3 29 29 H 1.09005 * 109.47183 * 329.71772 * 7 6 4 30 30 H 1.08995 * 109.47302 * 209.71494 * 7 6 4 31 31 H 1.00901 * 110.99574 * 56.05363 * 8 7 6 32 32 H 1.09002 * 109.47233 * 64.37379 * 9 8 7 33 33 H 1.08998 * 109.47093 * 304.36952 * 9 8 7 34 34 H 0.97002 * 119.99505 * 355.40597 * 14 13 11 35 35 H 1.08998 * 117.50270 * 215.00321 * 19 10 9 36 36 H 1.08997 * 117.49716 * 0.02605 * 19 10 9 37 37 H 1.08993 * 117.50080 * 359.97438 * 20 10 9 38 38 H 1.09002 * 117.49911 * 144.97448 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6089 0.6348 0.0055 5 6 4.7897 1.5019 0.0136 6 6 3.6149 -0.7157 -0.0007 7 6 4.8359 -1.5989 -0.0012 8 7 5.2327 -1.8866 1.3837 9 6 6.4229 -2.7469 1.4224 10 6 6.7406 -3.1130 2.8735 11 6 6.9830 -1.9490 3.7995 12 1 6.1746 -1.5600 4.4009 13 6 8.2366 -1.3806 3.8788 14 7 9.1834 -1.7579 3.0477 15 14 8.5903 -0.0747 5.1668 16 1 8.2896 1.2673 4.6066 17 1 7.7408 -0.3144 6.3610 18 1 10.0218 -0.1389 5.5567 19 6 6.0524 -4.3486 3.4573 20 6 7.5448 -4.3910 3.1198 21 6 2.3274 -1.1336 -0.0004 22 17 1.7892 -2.7841 0.0003 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8898 -0.5142 26 1 5.0862 1.7216 -1.0121 27 1 4.5539 2.4319 0.5309 28 1 5.6075 0.9973 0.5280 29 1 5.6520 -1.0905 -0.5147 30 1 4.6087 -2.5327 -0.5155 31 1 4.4705 -2.3000 1.8997 32 1 7.2697 -2.2153 0.9881 33 1 6.2330 -3.6558 0.8515 34 1 9.0204 -2.4822 2.4234 35 1 5.7749 -4.3196 4.5110 36 1 5.3737 -4.9008 2.8073 37 1 7.8473 -4.9712 2.2481 38 1 8.2496 -4.3898 3.9514 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922085138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:22 Heat of formation + Delta-G solvation = 86.680666 kcal Electronic energy + Delta-G solvation = -20191.435967 eV Core-core repulsion = 17096.977672 eV Total energy + Delta-G solvation = -3094.458295 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.33038 -37.40650 -36.34480 -35.01798 -33.60545 -31.80581 -30.54360 -29.43704 -26.55756 -25.32724 -24.76830 -23.30814 -21.25005 -20.40602 -19.77130 -19.20801 -16.99738 -16.40938 -15.79125 -15.18124 -14.57402 -14.17323 -14.08144 -13.70933 -13.61742 -13.59633 -13.28977 -12.85007 -12.49347 -12.41812 -12.31799 -12.17466 -11.59374 -11.50382 -11.47323 -11.13179 -10.83161 -10.75853 -10.44481 -10.39118 -10.10072 -9.57322 -9.15654 -8.52661 -8.43202 -8.29421 -8.24582 -7.77754 -6.27913 -3.97536 1.74082 2.06473 2.54048 2.86766 3.44964 3.48750 3.64240 4.42713 4.55105 4.55208 4.81933 4.91089 5.18587 5.22467 5.26386 5.33755 5.40137 5.53164 5.58021 5.61947 5.69783 5.77418 5.90870 6.04841 6.10412 6.26021 6.32801 6.43649 6.53261 6.61192 6.86388 6.89334 7.20910 7.25056 7.62937 7.67642 7.91413 8.34376 8.51577 8.95478 9.73752 11.11997 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.017931 B = 0.005195 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.177728 B = 5388.304213 C = 6287.933076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.086 3.914 3 N -0.289 5.289 4 N -0.349 5.349 5 C 0.099 3.901 6 C 0.126 3.874 7 C 0.113 3.887 8 N -0.656 5.656 9 C 0.104 3.896 10 C 0.025 3.975 11 C -0.545 4.545 12 H 0.051 0.949 13 C 0.026 3.974 14 N -0.913 5.913 15 Si 1.067 2.933 16 H -0.290 1.290 17 H -0.290 1.290 18 H -0.287 1.287 19 C -0.200 4.200 20 C -0.179 4.179 21 C -0.191 4.191 22 Cl -0.047 7.047 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.341 0.659 32 H 0.070 0.930 33 H 0.001 0.999 34 H 0.272 0.728 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.265 1.616 -8.263 14.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.080 4.080 3 N -0.113 5.113 4 N -0.130 5.130 5 C -0.042 4.042 6 C -0.004 4.004 7 C -0.018 4.018 8 N -0.287 5.287 9 C -0.025 4.025 10 C 0.024 3.976 11 C -0.583 4.583 12 H 0.069 0.931 13 C -0.179 4.179 14 N -0.549 5.549 15 Si 0.896 3.104 16 H -0.217 1.217 17 H -0.217 1.217 18 H -0.213 1.213 19 C -0.238 4.238 20 C -0.217 4.217 21 C -0.230 4.230 22 Cl -0.019 7.019 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.124 0.876 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.160 0.840 32 H 0.088 0.912 33 H 0.019 0.981 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.579 4.501 -7.647 13.808 hybrid contribution -1.512 -2.944 -0.821 3.410 sum -12.091 1.558 -8.468 14.843 Atomic orbital electron populations 1.20191 0.86230 1.03355 1.03303 1.22155 0.97145 0.88955 0.99735 1.77377 0.86368 1.21751 1.25760 1.48136 1.05574 1.03894 1.55411 1.22036 0.83941 0.94909 1.03271 1.20726 0.95635 0.85062 0.99019 1.20565 0.91707 0.95951 0.93576 1.60340 1.08345 1.51552 1.08485 1.21629 0.91525 0.91927 0.97410 1.19141 0.98026 0.88406 0.92035 1.21102 0.97342 1.15755 1.24129 0.93084 1.25640 0.92728 1.00474 0.99021 1.70717 1.36420 1.27885 1.19854 0.83571 0.75683 0.75581 0.75525 1.21677 1.21662 1.21269 1.22906 0.94668 1.05643 1.00539 1.22756 0.93286 1.03890 1.01744 1.20304 0.92150 0.86772 1.23792 1.98299 1.89776 1.15975 1.97895 0.90201 0.90708 0.90285 0.90807 0.89062 0.87619 0.89814 0.92960 0.84048 0.91214 0.98069 0.91664 0.90172 0.91822 0.91720 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.31 36.00 0.37 -0.38 16 2 C 0.09 1.25 7.22 -82.38 -0.59 0.65 16 3 N -0.29 -4.57 12.57 33.68 0.42 -4.15 16 4 N -0.35 -5.37 4.02 -63.85 -0.26 -5.63 16 5 C 0.10 1.24 11.10 59.85 0.66 1.90 16 6 C 0.13 1.98 6.45 -82.20 -0.53 1.45 16 7 C 0.11 1.76 5.52 -4.97 -0.03 1.74 16 8 N -0.66 -12.40 6.28 -115.05 -0.72 -13.12 16 9 C 0.10 2.16 5.50 -3.82 -0.02 2.14 16 10 C 0.02 0.58 1.06 -155.66 -0.16 0.41 16 11 C -0.55 -14.57 8.59 -34.44 -0.30 -14.86 16 12 H 0.05 1.42 7.82 -52.48 -0.41 1.01 16 13 C 0.03 0.70 5.39 -17.82 -0.10 0.61 16 14 N -0.91 -26.10 13.57 55.43 0.75 -25.35 16 15 Si 1.07 24.83 29.91 -169.99 -5.08 19.75 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 C -0.20 -4.24 9.94 -26.69 -0.27 -4.51 16 20 C -0.18 -4.00 8.76 -26.70 -0.23 -4.24 16 21 C -0.19 -2.88 6.63 -39.97 -0.27 -3.15 16 22 Cl -0.05 -0.64 28.59 -51.86 -1.48 -2.13 16 23 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.08 0.73 8.01 -51.93 -0.42 0.31 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.11 1.44 7.67 -51.93 -0.40 1.04 16 29 H 0.08 1.24 7.74 -51.93 -0.40 0.84 16 30 H 0.05 0.78 7.91 -51.93 -0.41 0.37 16 31 H 0.34 6.58 8.67 -39.29 -0.34 6.24 16 32 H 0.07 1.58 7.75 -51.93 -0.40 1.18 16 33 H 0.00 0.02 8.10 -51.93 -0.42 -0.40 16 34 H 0.27 7.68 6.14 -40.82 -0.25 7.43 16 35 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 LS Contribution 337.67 15.07 5.09 5.09 Total: -1.00 -29.81 337.67 -8.37 -38.18 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.63 Total: 5.59 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -1.46 Total: -18.24 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.20 Total: -48.24 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.08 Total: 19.75 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.48 Total: -2.13 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.81 -8.37 -38.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922085138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.862 kcal (2) G-P(sol) polarization free energy of solvation -29.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds