Wall clock time and date at job start Tue Mar 31 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35444 * 126.78078 * 2 1 4 4 C 1.41385 * 103.98584 * 180.13620 * 3 2 1 5 5 C 1.50696 * 126.79826 * 179.89030 * 4 3 2 6 6 C 1.52998 * 109.46969 * 124.71497 * 5 4 3 7 7 C 1.50706 * 109.47348 * 179.97438 * 6 5 4 8 8 O 1.20830 * 119.99594 * 359.97438 * 7 6 5 9 9 O 1.34222 * 120.00024 * 179.72254 * 7 6 5 10 10 C 1.45201 * 116.99867 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47142 * 180.02562 * 10 9 7 12 12 O 1.42893 * 109.47686 * 64.99657 * 11 10 9 13 13 C 1.42895 * 114.00408 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47479 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99936 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00358 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00395 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99846 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47027 * 90.00037 * 18 16 14 20 20 H 1.48496 * 109.46864 * 209.99710 * 18 16 14 21 21 H 1.48499 * 109.47107 * 329.99781 * 18 16 14 22 22 N 1.30177 * 106.39418 * 359.63009 * 4 3 2 23 23 O 1.20919 * 111.60380 * 0.23643 * 22 4 3 24 24 H 1.09000 * 109.47590 * 180.29586 * 1 2 3 25 25 H 1.09003 * 109.47327 * 300.30134 * 1 2 3 26 26 H 1.09006 * 109.46903 * 60.29870 * 1 2 3 27 27 H 1.07997 * 128.00991 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.47664 * 4.71425 * 5 4 3 29 29 H 1.09002 * 109.46824 * 244.70896 * 5 4 3 30 30 H 1.09001 * 109.47671 * 59.99812 * 6 5 4 31 31 H 1.08998 * 109.47454 * 299.99809 * 6 5 4 32 32 H 1.09009 * 109.46864 * 300.00062 * 10 9 7 33 33 H 1.09001 * 109.47271 * 60.00074 * 10 9 7 34 34 H 1.09008 * 109.47089 * 185.00120 * 11 10 9 35 35 H 1.09000 * 109.47064 * 304.99700 * 11 10 9 36 36 H 1.08995 * 109.47592 * 300.00427 * 13 12 11 37 37 H 1.09002 * 109.47189 * 60.00528 * 13 12 11 38 38 H 0.96996 * 120.00137 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5370 -0.0033 5 6 4.9211 1.2998 -0.0070 6 6 5.7798 0.8498 1.1767 7 6 7.0799 1.6121 1.1727 8 8 7.2974 2.4309 0.3112 9 8 7.9939 1.3850 2.1290 10 6 9.2226 2.1559 2.0628 11 6 10.1350 1.7622 3.2261 12 8 10.5357 0.3987 3.0770 13 6 11.3954 -0.0716 4.1170 14 6 11.7536 -1.5126 3.8595 15 1 11.3641 -2.0185 2.9885 16 6 12.5787 -2.1851 4.7359 17 7 12.8909 -3.4428 4.5115 18 14 13.2519 -1.3102 6.2429 19 1 12.3129 -1.4885 7.3794 20 1 14.5744 -1.8841 6.5988 21 1 13.4035 0.1374 5.9484 22 7 3.4763 -0.7566 0.0032 23 8 2.3094 -1.0737 0.0052 24 1 -0.3634 -1.0276 0.0053 25 1 -0.3634 0.5185 0.8873 26 1 -0.3633 0.5092 -0.8927 27 1 2.0346 2.1270 0.0004 28 1 4.7164 2.3670 0.0777 29 1 5.4541 1.1047 -0.9375 30 1 5.9846 -0.2175 1.0921 31 1 5.2468 1.0448 2.1072 32 1 9.7290 1.9521 1.1192 33 1 8.9888 3.2186 2.1276 34 1 11.0175 2.4021 3.2285 35 1 9.5969 1.8819 4.1665 36 1 12.3039 0.5302 4.1374 37 1 10.8838 0.0101 5.0761 38 1 13.4710 -3.9160 5.1282 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923888012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:19 Heat of formation + Delta-G solvation = -82.685424 kcal Electronic energy + Delta-G solvation = -20903.700237 eV Core-core repulsion = 17328.895762 eV Total energy + Delta-G solvation = -3574.804475 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.20005 -40.41389 -37.34965 -36.31643 -35.50689 -33.88110 -32.70466 -31.94401 -30.27930 -28.18290 -27.65722 -26.00474 -23.34987 -22.49466 -21.87610 -20.98766 -19.90362 -17.97585 -17.81237 -17.35859 -16.98211 -16.72976 -16.18235 -15.62461 -14.91243 -14.88838 -14.55498 -14.33062 -13.97437 -13.71010 -13.57803 -13.11928 -12.94522 -12.83715 -12.60208 -12.47768 -12.23286 -11.84166 -11.71048 -11.19735 -11.16530 -10.88772 -10.68476 -10.51706 -10.46002 -10.23843 -9.87949 -9.62045 -9.21095 -8.91587 -8.51366 -6.12121 -4.11576 1.17441 1.90104 2.22564 2.71875 2.82849 3.23912 3.30684 3.31521 3.87576 4.10049 4.34183 4.45924 4.56561 4.65577 4.76156 4.83905 4.91384 4.93575 5.09177 5.14122 5.18717 5.24865 5.29205 5.36861 5.44427 5.61749 5.67911 5.69435 5.77583 5.81682 5.95807 6.54422 6.54602 6.95842 7.56805 7.78481 7.95266 8.01735 8.63008 8.99361 9.46361 11.00875 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.022701 B = 0.002572 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.148345 B =10883.744026 C =11743.083011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.034 4.034 3 C -0.232 4.232 4 C 0.020 3.980 5 C -0.028 4.028 6 C -0.112 4.112 7 C 0.465 3.535 8 O -0.518 6.518 9 O -0.340 6.340 10 C 0.074 3.926 11 C 0.057 3.943 12 O -0.375 6.375 13 C 0.168 3.832 14 C -0.520 4.520 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.894 5.894 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.267 1.267 22 N -0.358 5.358 23 O 0.102 5.898 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.171 0.829 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.004 0.996 37 H 0.001 0.999 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.370 13.002 -7.254 28.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 C -0.253 4.253 4 C -0.139 4.139 5 C -0.066 4.066 6 C -0.150 4.150 7 C 0.308 3.692 8 O -0.408 6.408 9 O -0.256 6.256 10 C 0.000 4.000 11 C -0.021 4.021 12 O -0.295 6.295 13 C 0.093 3.907 14 C -0.558 4.558 15 H 0.101 0.899 16 C -0.130 4.130 17 N -0.533 5.533 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.191 1.191 22 N -0.061 5.061 23 O 0.034 5.966 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.189 0.811 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.132 0.868 31 H 0.125 0.875 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.022 0.978 37 H 0.018 0.982 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.342 11.934 -7.563 27.285 hybrid contribution 0.315 1.404 1.026 1.768 sum -23.027 13.338 -6.537 27.402 Atomic orbital electron populations 1.20345 0.84022 1.04774 1.04078 1.24537 0.96459 0.86260 1.02533 1.22413 0.91216 1.01076 1.10617 1.23480 0.97157 0.90094 1.03149 1.19773 0.88628 0.99028 0.99172 1.21312 0.90425 1.02223 1.01019 1.23517 0.85851 0.80877 0.78914 1.90647 1.79004 1.33967 1.37177 1.86600 1.27566 1.61974 1.49443 1.23191 0.81761 0.94162 1.00860 1.22403 0.95852 0.87410 0.96391 1.87979 1.68285 1.23239 1.49959 1.20635 0.87953 0.96100 0.85993 1.20878 1.29760 0.93521 1.11610 0.89921 1.24777 0.95712 0.94783 0.97740 1.69875 1.36450 1.09449 1.37482 0.86837 0.78952 0.80323 0.83537 1.19889 1.20746 1.19134 1.73894 0.96826 1.16255 1.19147 1.84860 1.11287 1.33158 1.67253 0.89817 0.89130 0.89186 0.81101 0.88567 0.88711 0.86765 0.87471 0.90279 0.90256 0.91790 0.93051 0.97828 0.98168 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.24 10.45 36.01 0.38 0.14 16 2 C -0.03 -0.26 7.49 -35.31 -0.26 -0.52 16 3 C -0.23 -1.83 11.05 -39.38 -0.44 -2.26 16 4 C 0.02 0.21 6.59 -82.10 -0.54 -0.33 16 5 C -0.03 -0.28 5.10 -27.89 -0.14 -0.42 16 6 C -0.11 -1.26 5.78 -27.88 -0.16 -1.42 16 7 C 0.46 6.68 7.96 36.01 0.29 6.97 16 8 O -0.52 -8.21 15.73 -18.75 -0.30 -8.50 16 9 O -0.34 -5.62 10.19 -42.00 -0.43 -6.05 16 10 C 0.07 1.14 5.84 37.16 0.22 1.36 16 11 C 0.06 0.99 6.33 37.16 0.24 1.23 16 12 O -0.38 -8.90 10.30 -38.80 -0.40 -9.30 16 13 C 0.17 4.31 4.76 36.00 0.17 4.48 16 14 C -0.52 -15.68 9.99 -34.44 -0.34 -16.02 16 15 H 0.08 2.74 8.06 -52.48 -0.42 2.32 16 16 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.89 -27.84 13.96 55.43 0.77 -27.07 16 18 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 22 N -0.36 -4.42 12.06 33.42 0.40 -4.02 16 23 O 0.10 1.09 11.20 17.17 0.19 1.28 16 24 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 26 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 28 H 0.10 0.82 8.09 -51.93 -0.42 0.40 16 29 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 30 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 33 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 34 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.00 0.10 7.20 -51.93 -0.37 -0.27 16 37 H 0.00 0.02 7.57 -51.93 -0.39 -0.38 16 38 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 337.11 15.07 5.08 5.08 Total: -1.00 -35.76 337.11 -5.47 -41.23 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -5.42 Total: -4.65 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.70 Total: -4.78 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 1.18 Total: -31.08 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.93 Total: -22.57 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.76 -5.47 -41.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923888012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.455 kcal (2) G-P(sol) polarization free energy of solvation -35.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds