Wall clock time and date at job start Tue Mar 31 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35444 * 126.78078 * 2 1 4 4 C 1.41385 * 103.98584 * 180.13620 * 3 2 1 5 5 C 1.50696 * 126.79826 * 179.89030 * 4 3 2 6 6 C 1.52998 * 109.46969 * 124.71497 * 5 4 3 7 7 C 1.50706 * 109.47348 * 179.97438 * 6 5 4 8 8 O 1.20830 * 119.99594 * 359.97438 * 7 6 5 9 9 O 1.34222 * 120.00024 * 179.72254 * 7 6 5 10 10 C 1.45201 * 116.99867 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47142 * 180.02562 * 10 9 7 12 12 O 1.42893 * 109.47686 * 64.99657 * 11 10 9 13 13 C 1.42895 * 114.00408 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47479 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99936 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00358 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00395 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99846 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47027 * 90.00037 * 18 16 14 20 20 H 1.48496 * 109.46864 * 209.99710 * 18 16 14 21 21 H 1.48499 * 109.47107 * 329.99781 * 18 16 14 22 22 N 1.30177 * 106.39418 * 359.63009 * 4 3 2 23 23 O 1.20919 * 111.60380 * 0.23643 * 22 4 3 24 24 H 1.09000 * 109.47590 * 180.29586 * 1 2 3 25 25 H 1.09003 * 109.47327 * 300.30134 * 1 2 3 26 26 H 1.09006 * 109.46903 * 60.29870 * 1 2 3 27 27 H 1.07997 * 128.00991 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.47664 * 4.71425 * 5 4 3 29 29 H 1.09002 * 109.46824 * 244.70896 * 5 4 3 30 30 H 1.09001 * 109.47671 * 59.99812 * 6 5 4 31 31 H 1.08998 * 109.47454 * 299.99809 * 6 5 4 32 32 H 1.09009 * 109.46864 * 300.00062 * 10 9 7 33 33 H 1.09001 * 109.47271 * 60.00074 * 10 9 7 34 34 H 1.09008 * 109.47089 * 185.00120 * 11 10 9 35 35 H 1.09000 * 109.47064 * 304.99700 * 11 10 9 36 36 H 1.08995 * 109.47592 * 300.00427 * 13 12 11 37 37 H 1.09002 * 109.47189 * 60.00528 * 13 12 11 38 38 H 0.96996 * 120.00137 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5370 -0.0033 5 6 4.9211 1.2998 -0.0070 6 6 5.7798 0.8498 1.1767 7 6 7.0799 1.6121 1.1727 8 8 7.2974 2.4309 0.3112 9 8 7.9939 1.3850 2.1290 10 6 9.2226 2.1559 2.0628 11 6 10.1350 1.7622 3.2261 12 8 10.5357 0.3987 3.0770 13 6 11.3954 -0.0716 4.1170 14 6 11.7536 -1.5126 3.8595 15 1 11.3641 -2.0185 2.9885 16 6 12.5787 -2.1851 4.7359 17 7 12.8909 -3.4428 4.5115 18 14 13.2519 -1.3102 6.2429 19 1 12.3129 -1.4885 7.3794 20 1 14.5744 -1.8841 6.5988 21 1 13.4035 0.1374 5.9484 22 7 3.4763 -0.7566 0.0032 23 8 2.3094 -1.0737 0.0052 24 1 -0.3634 -1.0276 0.0053 25 1 -0.3634 0.5185 0.8873 26 1 -0.3633 0.5092 -0.8927 27 1 2.0346 2.1270 0.0004 28 1 4.7164 2.3670 0.0777 29 1 5.4541 1.1047 -0.9375 30 1 5.9846 -0.2175 1.0921 31 1 5.2468 1.0448 2.1072 32 1 9.7290 1.9521 1.1192 33 1 8.9888 3.2186 2.1276 34 1 11.0175 2.4021 3.2285 35 1 9.5969 1.8819 4.1665 36 1 12.3039 0.5302 4.1374 37 1 10.8838 0.0101 5.0761 38 1 13.4710 -3.9160 5.1282 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923888012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:19 Heat of formation + Delta-G solvation = -106.616910 kcal Electronic energy + Delta-G solvation = -20904.737984 eV Core-core repulsion = 17328.895762 eV Total energy + Delta-G solvation = -3575.842222 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.92813 -41.59923 -38.89924 -37.66021 -36.37278 -34.91134 -34.42581 -32.84800 -31.74892 -29.63111 -28.64722 -26.94855 -24.13966 -24.02586 -23.65556 -22.08303 -20.65068 -19.12833 -18.95653 -18.64500 -18.17739 -18.00752 -17.41508 -17.20377 -16.53292 -16.27612 -15.64052 -15.38278 -14.95262 -14.64591 -14.52795 -14.16130 -14.05245 -13.89217 -13.77814 -13.40794 -13.28573 -13.09336 -13.01892 -12.64985 -12.64142 -12.31215 -11.92807 -11.86657 -11.74222 -11.63426 -11.37209 -11.03213 -10.94673 -10.42811 -10.23736 -8.38600 -6.47572 0.53791 1.07856 1.18904 1.33121 1.37131 1.47812 1.66006 2.28110 2.28859 2.93385 2.94351 3.14177 3.44650 3.60424 3.90420 3.93754 3.98637 4.10625 4.16195 4.31149 4.37615 4.42508 4.47973 4.53995 4.56772 4.69432 4.77144 4.77703 4.86630 4.94873 4.98119 5.07923 5.29745 5.38512 5.40819 5.89279 6.56242 6.61948 6.69973 7.16683 7.33207 8.78792 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.022701 B = 0.002572 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.148345 B =10883.744026 C =11743.083011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.030 4.030 3 C -0.235 4.235 4 C 0.009 3.991 5 C -0.021 4.021 6 C -0.105 4.105 7 C 0.466 3.534 8 O -0.534 6.534 9 O -0.361 6.361 10 C 0.073 3.927 11 C 0.049 3.951 12 O -0.409 6.409 13 C 0.178 3.822 14 C -0.550 4.550 15 H 0.025 0.975 16 C 0.009 3.991 17 N -0.943 5.943 18 Si 0.961 3.039 19 H -0.259 1.259 20 H -0.274 1.274 21 H -0.240 1.240 22 N -0.400 5.400 23 O 0.083 5.917 24 H 0.089 0.911 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.201 0.799 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.127 0.873 32 H 0.067 0.933 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.020 0.980 37 H 0.015 0.985 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.510 15.818 -5.652 30.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.093 4.093 3 C -0.257 4.257 4 C -0.149 4.149 5 C -0.059 4.059 6 C -0.143 4.143 7 C 0.311 3.689 8 O -0.424 6.424 9 O -0.278 6.278 10 C -0.001 4.001 11 C -0.028 4.028 12 O -0.329 6.329 13 C 0.103 3.897 14 C -0.588 4.588 15 H 0.043 0.957 16 C -0.188 4.188 17 N -0.583 5.583 18 Si 0.781 3.219 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.164 1.164 22 N -0.107 5.107 23 O 0.018 5.982 24 H 0.108 0.892 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.218 0.782 28 H 0.133 0.867 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.145 0.855 32 H 0.085 0.915 33 H 0.133 0.867 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.038 0.962 37 H 0.033 0.967 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.516 14.761 -5.984 29.236 hybrid contribution 0.562 0.496 0.405 0.852 sum -23.953 15.258 -5.579 28.943 Atomic orbital electron populations 1.20589 0.80864 1.05787 1.05832 1.25367 0.98084 0.85303 1.00566 1.22775 0.89870 1.02558 1.10459 1.23703 0.98224 0.89921 1.03089 1.19732 0.88278 1.00008 0.97899 1.21350 0.89287 1.00940 1.02687 1.24004 0.86103 0.80664 0.78126 1.90630 1.79359 1.34861 1.37560 1.86597 1.28178 1.62682 1.50322 1.23275 0.81317 0.95881 0.99583 1.22785 0.97487 0.84560 0.97944 1.87922 1.68165 1.27124 1.49703 1.20365 0.89091 0.93326 0.86926 1.21179 1.30761 0.96406 1.10410 0.95659 1.25931 0.95520 0.95563 1.01824 1.70045 1.37242 1.11637 1.39338 0.85538 0.78336 0.80035 0.77976 1.18348 1.19875 1.16366 1.73892 0.97971 1.17552 1.21255 1.84805 1.11213 1.34487 1.67665 0.89246 0.87248 0.87245 0.78236 0.86715 0.89941 0.88011 0.85487 0.91458 0.86710 0.88981 0.91492 0.96236 0.96697 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.45 71.24 0.74 0.46 16 2 C -0.03 -0.41 7.49 25.04 0.19 -0.22 16 3 C -0.24 -3.32 11.05 22.40 0.25 -3.07 16 4 C 0.01 0.18 6.59 43.58 0.29 0.46 16 5 C -0.02 -0.42 5.10 29.85 0.15 -0.27 16 6 C -0.10 -2.35 5.78 29.85 0.17 -2.18 16 7 C 0.47 13.27 7.96 71.24 0.57 13.84 16 8 O -0.53 -16.59 15.73 21.95 0.35 -16.24 16 9 O -0.36 -11.80 10.19 -48.69 -0.50 -12.30 16 10 C 0.07 2.15 5.84 71.98 0.42 2.57 16 11 C 0.05 1.59 6.33 71.98 0.46 2.05 16 12 O -0.41 -19.39 10.30 -145.57 -1.50 -20.88 16 13 C 0.18 8.98 4.76 71.23 0.34 9.32 16 14 C -0.55 -34.20 9.99 25.60 0.26 -33.95 16 15 H 0.02 1.78 8.06 -2.91 -0.02 1.76 16 16 C 0.01 0.56 5.47 84.65 0.46 1.03 16 17 N -0.94 -60.32 13.96 21.45 0.30 -60.02 16 18 Si 0.96 43.31 27.47 68.60 1.88 45.19 16 19 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.24 -9.78 6.54 99.48 0.65 -9.13 16 22 N -0.40 -10.17 12.06 -49.56 -0.60 -10.77 16 23 O 0.08 1.80 11.20 71.60 0.80 2.60 16 24 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 25 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.11 0.06 8.14 -2.38 -0.02 0.04 16 27 H 0.20 1.45 8.06 -2.91 -0.02 1.43 16 28 H 0.11 1.79 8.09 -2.39 -0.02 1.77 16 29 H 0.08 1.81 8.10 -2.39 -0.02 1.79 16 30 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.12 2.57 8.13 -2.39 -0.02 2.55 16 34 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 37 H 0.02 0.72 7.57 -2.39 -0.02 0.70 16 38 H 0.27 15.98 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -81.19 337.11 6.03 -75.16 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 1.00 Total: 7.23 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 4.29 Total: -9.97 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -0.30 Total: -70.79 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -0.85 Total: -46.82 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Total: -81.19 6.03 -75.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923888012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.461 kcal (2) G-P(sol) polarization free energy of solvation -81.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds