Wall clock time and date at job start Tue Mar 31 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38263 * 119.99996 * 2 1 4 4 C 1.38204 * 120.00224 * 180.27367 * 3 2 1 5 5 C 1.38266 * 119.99959 * 359.74593 * 4 3 2 6 6 C 1.38212 * 119.99813 * 359.97438 * 5 4 3 7 7 C 1.38211 * 120.00427 * 179.74738 * 2 1 3 8 8 C 1.50699 * 119.99900 * 359.97438 * 7 2 1 9 9 F 1.39896 * 109.47258 * 177.01821 * 8 7 2 10 10 F 1.39897 * 109.47382 * 57.01635 * 8 7 2 11 11 C 1.50703 * 109.47156 * 297.01501 * 8 7 2 12 12 O 1.21283 * 120.00169 * 334.56262 * 11 8 7 13 13 N 1.34777 * 119.99782 * 154.27610 * 11 8 7 14 14 C 1.46508 * 119.99885 * 180.02562 * 13 11 8 15 15 C 1.52992 * 109.46909 * 180.02562 * 14 13 11 16 16 C 1.50702 * 109.47159 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99683 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00455 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99608 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00052 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46821 * 90.00211 * 20 18 16 22 22 H 1.48504 * 109.47166 * 209.99971 * 20 18 16 23 23 H 1.48496 * 109.47342 * 330.00196 * 20 18 16 24 24 H 1.08998 * 109.47096 * 270.25023 * 1 2 3 25 25 H 1.08994 * 109.47188 * 30.25838 * 1 2 3 26 26 H 1.09010 * 109.46701 * 150.25088 * 1 2 3 27 27 H 1.08000 * 119.99488 * 0.04156 * 3 2 1 28 28 H 1.07999 * 120.00122 * 179.76936 * 4 3 2 29 29 H 1.07994 * 119.99820 * 179.97438 * 5 4 3 30 30 H 1.08001 * 119.99887 * 179.97438 * 6 5 4 31 31 H 0.96996 * 120.00502 * 0.02562 * 13 11 8 32 32 H 1.09004 * 109.46936 * 300.00247 * 14 13 11 33 33 H 1.08991 * 109.46763 * 60.00288 * 14 13 11 34 34 H 1.09010 * 109.47305 * 299.99640 * 15 14 13 35 35 H 1.08995 * 109.48259 * 59.99963 * 15 14 13 36 36 H 0.97006 * 119.99623 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 -0.0057 5 6 4.2717 0.0001 -0.0061 6 6 3.5807 -1.1969 -0.0003 7 6 2.1981 -1.1969 0.0053 8 6 1.4447 -2.5020 0.0116 9 9 2.3523 -3.5647 -0.0524 10 9 0.5893 -2.5521 -1.0942 11 6 0.6351 -2.6085 1.2782 12 8 0.9803 -2.0038 2.2713 13 7 -0.4757 -3.3712 1.3058 14 6 -1.2631 -3.4744 2.5370 15 6 -2.4621 -4.3947 2.2999 16 6 -3.2724 -4.5004 3.5662 17 1 -2.9628 -3.9649 4.4516 18 6 -4.4089 -5.2805 3.5944 19 7 -4.7855 -5.9329 2.5163 20 14 -5.4128 -5.4119 5.1642 21 1 -6.4452 -4.3447 5.1822 22 1 -6.0735 -6.7408 5.2195 23 1 -4.5179 -5.2548 6.3387 24 1 -0.3633 0.0045 1.0276 25 1 -0.3633 0.8876 -0.5178 26 1 -0.3633 -0.8923 -0.5100 27 1 1.6582 2.1327 0.0007 28 1 4.1203 2.1328 -0.0095 29 1 5.3516 0.0001 -0.0110 30 1 4.1207 -2.1322 -0.0010 31 1 -0.7540 -3.8519 0.5106 32 1 -0.6415 -3.8856 3.3324 33 1 -1.6160 -2.4847 2.8265 34 1 -3.0838 -3.9839 1.5044 35 1 -2.1090 -5.3845 2.0106 36 1 -5.5853 -6.4815 2.5361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116572761.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:28 Heat of formation + Delta-G solvation = -116.509669 kcal Electronic energy + Delta-G solvation = -22149.535812 eV Core-core repulsion = 18462.177092 eV Total energy + Delta-G solvation = -3687.358720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.37439 -47.36385 -39.91654 -38.96419 -35.16767 -33.12749 -32.95125 -31.94508 -29.99202 -27.80180 -26.67098 -24.70389 -22.46652 -21.85694 -21.05578 -20.51274 -18.34291 -17.85393 -17.70565 -16.49890 -15.92231 -15.40670 -15.21038 -14.96063 -14.74422 -14.64887 -14.25683 -14.03683 -14.02995 -13.56556 -13.28630 -13.11424 -13.04609 -12.58369 -12.36461 -12.22983 -12.14245 -11.31569 -11.29643 -11.19863 -11.09298 -10.70541 -10.44838 -10.04349 -9.62197 -9.33347 -9.16104 -8.85580 -8.78093 -8.45745 -6.13656 -4.17320 0.94874 1.18431 2.33839 2.79841 3.26901 3.33413 3.37293 3.41029 3.67911 3.97188 4.36868 4.41574 4.68177 4.72038 4.75331 4.86573 5.10667 5.23493 5.30747 5.46919 5.58543 5.60442 5.75388 6.05943 6.13017 6.15379 6.19140 6.25234 6.32289 6.51687 6.63034 6.71854 7.40367 7.52704 7.61541 7.83108 8.08643 8.24676 8.88099 9.47887 10.97814 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.032090 B = 0.003632 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.331016 B = 7708.309254 C = 7955.591152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.032 4.032 3 C -0.125 4.125 4 C -0.096 4.096 5 C -0.131 4.131 6 C -0.077 4.077 7 C -0.142 4.142 8 C 0.331 3.669 9 F -0.177 7.177 10 F -0.180 7.180 11 C 0.482 3.518 12 O -0.503 6.503 13 N -0.700 5.700 14 C 0.119 3.881 15 C 0.012 3.988 16 C -0.524 4.524 17 H 0.060 0.940 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.898 3.102 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.405 0.595 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.986 11.679 -8.509 20.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 C -0.143 4.143 4 C -0.114 4.114 5 C -0.149 4.149 6 C -0.095 4.095 7 C -0.144 4.144 8 C 0.291 3.709 9 F -0.158 7.158 10 F -0.161 7.161 11 C 0.261 3.739 12 O -0.378 6.378 13 N -0.350 5.350 14 C -0.002 4.002 15 C -0.026 4.026 16 C -0.562 4.562 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.531 5.531 20 Si 0.725 3.275 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.240 0.760 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.058 11.938 -7.855 20.760 hybrid contribution -0.690 -0.594 0.250 0.944 sum 14.368 11.343 -7.606 19.823 Atomic orbital electron populations 1.21205 0.90580 1.04280 1.03797 1.19638 0.96458 0.91947 0.95177 1.21003 0.94299 0.97215 1.01755 1.21268 0.94281 0.98250 0.97619 1.21071 1.00069 0.91971 1.01796 1.20966 0.92488 0.99365 0.96671 1.19614 0.94607 0.91994 1.08154 1.19813 0.82075 0.84888 0.84140 1.93039 1.67747 1.58372 1.96605 1.93017 1.70667 1.96588 1.55810 1.20404 0.82890 0.81808 0.88807 1.90764 1.68897 1.44552 1.33581 1.46407 1.24806 1.46526 1.17222 1.21930 0.93287 1.01449 0.83525 1.19352 0.90738 0.94124 0.98367 1.21006 1.09047 1.29233 0.96961 0.92178 1.24996 0.97429 0.95236 0.96563 1.69956 1.24856 1.30276 1.27993 0.86495 0.80212 0.77433 0.83320 1.20521 1.21128 1.19705 0.89867 0.90600 0.90247 0.85299 0.85545 0.85371 0.84921 0.76011 0.91891 0.91858 0.95665 0.95696 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.56 36.00 0.31 -1.48 16 2 C -0.03 -0.42 5.60 -104.62 -0.59 -1.01 16 3 C -0.12 -1.35 9.70 -39.58 -0.38 -1.73 16 4 C -0.10 -0.92 10.05 -39.58 -0.40 -1.32 16 5 C -0.13 -1.32 10.05 -39.58 -0.40 -1.71 16 6 C -0.08 -0.94 9.43 -39.58 -0.37 -1.31 16 7 C -0.14 -2.01 4.50 -104.63 -0.47 -2.48 16 8 C 0.33 5.00 1.97 -29.03 -0.06 4.94 16 9 F -0.18 -2.64 15.71 2.25 0.04 -2.60 16 10 F -0.18 -2.58 14.27 2.25 0.03 -2.54 16 11 C 0.48 8.37 5.54 -10.98 -0.06 8.31 16 12 O -0.50 -10.00 16.10 5.55 0.09 -9.91 16 13 N -0.70 -12.32 5.49 -60.29 -0.33 -12.65 16 14 C 0.12 2.45 5.61 -4.04 -0.02 2.43 16 15 C 0.01 0.28 5.09 -27.89 -0.14 0.14 16 16 C -0.52 -14.22 9.11 -34.44 -0.31 -14.54 16 17 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 20 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 25 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 26 H 0.08 1.05 5.22 -51.92 -0.27 0.77 16 27 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 29 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.13 1.46 7.16 -52.49 -0.38 1.09 16 31 H 0.40 6.46 8.01 -40.82 -0.33 6.14 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 35 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 315.70 15.07 4.76 4.76 Total: -1.00 -30.41 315.70 -7.01 -37.42 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.31 Total: 2.70 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -3.00 Total: -8.20 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.41 Total: -37.66 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.07 Total: -5.15 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.41 -7.01 -37.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116572761.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.094 kcal (2) G-P(sol) polarization free energy of solvation -30.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds