Wall clock time and date at job start Tue Mar 31 2020 05:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86800 * 119.99995 * 2 1 4 4 H 1.48498 * 109.47093 * 239.99941 * 3 2 1 5 5 H 1.48500 * 109.47224 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46798 * 120.00027 * 3 2 1 7 7 C 1.38659 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00005 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.35755 * 116.99718 * 185.05283 * 9 7 2 11 11 C 1.38872 * 120.07142 * 354.46798 * 10 9 7 12 12 C 1.38096 * 119.93228 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.06635 * 359.97438 * 12 11 10 14 14 C 1.50704 * 119.92644 * 180.02562 * 13 12 11 15 15 N 1.46897 * 109.47109 * 90.00229 * 14 13 12 16 16 C 1.47904 * 111.00466 * 169.99861 * 15 14 13 17 17 C 1.53993 * 107.06152 * 214.15363 * 16 15 14 18 18 H 1.09000 * 110.30765 * 120.13504 * 17 16 15 19 19 F 1.39892 * 110.30656 * 242.30603 * 17 16 15 20 20 C 1.54600 * 105.13626 * 1.22269 * 17 16 15 21 21 H 1.09000 * 110.87225 * 263.52761 * 20 17 16 22 22 F 1.39896 * 110.72150 * 140.31959 * 20 17 16 23 23 C 1.48526 * 111.00470 * 52.59820 * 15 14 13 24 24 C 1.38296 * 120.13932 * 0.28971 * 13 12 11 25 25 C 1.38103 * 120.06885 * 359.45983 * 24 13 12 26 26 H 0.96993 * 119.99787 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.03512 * 359.97438 * 11 10 9 28 28 H 1.07997 * 119.96672 * 179.97438 * 12 11 10 29 29 H 1.08996 * 109.47364 * 329.99889 * 14 13 12 30 30 H 1.09007 * 109.46740 * 209.99766 * 14 13 12 31 31 H 1.09005 * 109.91108 * 333.50400 * 16 15 14 32 32 H 1.08997 * 109.91834 * 94.79049 * 16 15 14 33 33 H 1.09001 * 110.66864 * 278.16121 * 23 15 14 34 34 H 1.09007 * 110.67074 * 41.11938 * 23 15 14 35 35 H 1.08004 * 119.96830 * 179.70522 * 24 13 12 36 36 H 1.08000 * 120.03321 * 180.26965 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6963 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0700 -3.5047 0.1045 11 6 3.4572 -3.4396 0.0921 12 6 4.2023 -4.5973 0.1996 13 6 3.5685 -5.8206 0.3201 14 6 4.3848 -7.0819 0.4378 15 7 4.6561 -7.3591 1.8547 16 6 5.2448 -8.7048 2.0283 17 6 4.7222 -9.2573 3.3673 18 1 4.1683 -10.1819 3.2047 19 9 5.7850 -9.4756 4.2504 20 6 3.7835 -8.1593 3.9183 21 1 4.3077 -7.5216 4.6301 22 9 2.6492 -8.7277 4.5076 23 6 3.3996 -7.3617 2.6467 24 6 2.1873 -5.8893 0.3273 25 6 1.4365 -4.7346 0.2253 26 1 -0.4849 0.8400 0.0004 27 1 3.9527 -2.4846 -0.0024 28 1 5.2811 -4.5473 0.1896 29 1 5.3274 -6.9557 -0.0947 30 1 3.8311 -7.9148 0.0042 31 1 4.9324 -9.3550 1.2111 32 1 6.3321 -8.6338 2.0549 33 1 3.1055 -6.3443 2.9049 34 1 2.6014 -7.8645 2.1005 35 1 1.6952 -6.8465 0.4167 36 1 0.3579 -4.7886 0.2353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137115272.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:13 Heat of formation + Delta-G solvation = -92.952035 kcal Electronic energy + Delta-G solvation = -21645.986047 eV Core-core repulsion = 17959.648862 eV Total energy + Delta-G solvation = -3686.337185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.28778 -47.60388 -39.46256 -38.41647 -36.40606 -32.57282 -31.81672 -30.26897 -29.14617 -28.46734 -25.72737 -24.50717 -22.28508 -21.63980 -21.49134 -20.34627 -18.06761 -17.63135 -17.07070 -16.89046 -15.66926 -15.55186 -15.30841 -14.94635 -14.64731 -14.53887 -14.25769 -14.09251 -13.65502 -13.54530 -13.38365 -13.19072 -12.78001 -12.56405 -12.34116 -11.85444 -11.60126 -11.56539 -11.25004 -11.13182 -10.81542 -10.73792 -10.68734 -10.57987 -10.46956 -9.38638 -8.88854 -8.65460 -8.24119 -7.25296 -6.49405 -4.08401 2.13777 2.19762 3.10902 3.11975 3.14989 3.58258 3.80538 3.93037 3.95056 4.02384 4.42925 4.54175 4.67972 4.82845 5.03675 5.08583 5.14743 5.20811 5.22585 5.30010 5.56562 5.63631 5.64371 5.75222 5.80960 5.84387 6.14501 6.34941 6.56037 6.62756 6.74974 6.85317 7.00947 7.17554 7.33082 7.38993 7.75450 7.95387 8.96034 9.64916 10.68312 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.029269 B = 0.003361 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.423725 B = 8328.316533 C = 8440.505738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.393 4.393 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.157 3.843 11 C -0.236 4.236 12 C -0.047 4.047 13 C -0.193 4.193 14 C 0.106 3.894 15 N -0.505 5.505 16 C 0.010 3.990 17 C 0.059 3.941 18 H 0.103 0.897 19 F -0.199 7.199 20 C 0.060 3.940 21 H 0.114 0.886 22 F -0.200 7.200 23 C 0.020 3.980 24 C -0.067 4.067 25 C -0.193 4.193 26 H 0.271 0.729 27 H 0.127 0.873 28 H 0.109 0.891 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.805 -15.422 3.420 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.103 3.897 11 C -0.255 4.255 12 C -0.066 4.066 13 C -0.194 4.194 14 C -0.020 4.020 15 N -0.230 5.230 16 C -0.118 4.118 17 C 0.021 3.979 18 H 0.121 0.879 19 F -0.180 7.180 20 C 0.023 3.977 21 H 0.131 0.869 22 F -0.181 7.181 23 C -0.108 4.108 24 C -0.086 4.086 25 C -0.213 4.213 26 H 0.081 0.919 27 H 0.145 0.855 28 H 0.127 0.873 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.082 0.918 35 H 0.125 0.875 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.722 -14.808 3.590 17.557 hybrid contribution -0.075 0.163 -0.235 0.296 sum 8.647 -14.646 3.354 17.336 Atomic orbital electron populations 1.70026 1.05999 1.27899 1.45679 1.25302 0.95843 0.98884 0.96409 0.85777 0.78723 0.79679 0.79251 1.19452 1.20239 1.19424 1.21301 0.91824 0.80781 1.53052 0.89021 1.83977 1.34443 1.11513 1.77930 1.19406 0.90334 0.88024 0.91940 1.21165 0.93757 0.98982 1.11605 1.20574 0.98399 0.91468 0.96124 1.19013 0.93064 0.93747 1.13591 1.21029 0.99097 0.95085 0.86810 1.64955 1.22462 1.24817 1.10716 1.23523 1.02429 0.90868 0.95017 1.23039 0.86066 0.99922 0.88840 0.87946 1.92856 1.58541 1.96087 1.70517 1.23167 0.83826 0.94123 0.96599 0.86863 1.92839 1.53230 1.86305 1.85682 1.23741 0.92686 1.02432 0.91953 1.20490 0.92874 0.96599 0.98670 1.20170 0.99532 0.90293 1.11264 0.91888 0.85521 0.87339 0.90052 0.94296 0.91721 0.88302 0.87446 0.91770 0.87542 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.99 13.67 55.48 0.76 -24.23 16 2 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 20.23 29.55 -169.99 -5.02 15.21 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.39 -10.83 9.49 30.89 0.29 -10.54 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 9 O -0.18 -4.93 9.76 0.04 0.00 -4.93 16 10 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 11 C -0.24 -4.95 9.17 -39.40 -0.36 -5.31 16 12 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 13 C -0.19 -3.04 4.59 -104.57 -0.48 -3.52 16 14 C 0.11 1.30 5.18 -4.98 -0.03 1.27 16 15 N -0.50 -5.93 5.39 -231.89 -1.25 -7.18 16 16 C 0.01 0.09 6.55 -2.75 -0.02 0.07 16 17 C 0.06 0.56 4.59 -25.37 -0.12 0.44 16 18 H 0.10 0.81 8.12 -51.93 -0.42 0.39 16 19 F -0.20 -2.23 17.09 2.25 0.04 -2.19 16 20 C 0.06 0.65 4.66 -24.87 -0.12 0.54 16 21 H 0.11 1.20 8.13 -51.93 -0.42 0.78 16 22 F -0.20 -2.44 17.19 2.25 0.04 -2.41 16 23 C 0.02 0.24 4.78 -1.90 -0.01 0.23 16 24 C -0.07 -1.12 8.34 -39.61 -0.33 -1.45 16 25 C -0.19 -3.92 9.99 -39.39 -0.39 -4.31 16 26 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 27 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16 28 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 29 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 30 H 0.04 0.43 7.75 -51.92 -0.40 0.03 16 31 H 0.06 0.50 7.57 -51.93 -0.39 0.11 16 32 H 0.10 0.89 8.02 -51.93 -0.42 0.47 16 33 H 0.11 1.47 7.74 -51.93 -0.40 1.07 16 34 H 0.06 0.74 7.09 -51.92 -0.37 0.37 16 35 H 0.11 1.48 7.40 -52.48 -0.39 1.09 16 36 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 308.32 15.07 4.65 4.65 Total: -1.00 -29.76 308.32 -7.27 -37.03 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.18 Total: 3.41 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -2.30 Total: -19.36 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: -0.49 Total: -31.40 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: 0.00 Total: -4.93 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.08 Total: -4.60 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.76 -7.27 -37.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115272.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.926 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds