Wall clock time and date at job start Tue Mar 31 2020 06:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47217 * 2 1 4 4 H 1.09002 * 109.47383 * 305.00113 * 3 2 1 5 5 C 1.50704 * 109.47284 * 185.00062 * 3 2 1 6 6 H 1.07998 * 120.00032 * 240.00175 * 5 3 2 7 7 C 1.37874 * 119.99846 * 60.00208 * 5 3 2 8 8 N 1.31512 * 119.99887 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00013 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46888 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.46859 * 119.99784 * 9 7 5 12 12 H 1.48501 * 109.46841 * 240.00164 * 9 7 5 13 13 N 1.46501 * 109.47205 * 65.00004 * 3 2 1 14 14 C 1.34781 * 120.00417 * 275.00282 * 13 3 2 15 15 O 1.21562 * 119.99562 * 359.97438 * 14 13 3 16 16 C 1.47728 * 120.00072 * 179.97438 * 14 13 3 17 17 C 1.39651 * 120.11187 * 353.74958 * 16 14 13 18 18 C 1.37842 * 119.92775 * 180.02562 * 17 16 14 19 19 C 1.38614 * 120.14760 * 359.97438 * 18 17 16 20 20 F 1.35098 * 119.89158 * 180.02562 * 19 18 17 21 21 C 1.38840 * 120.21546 * 0.29572 * 19 18 17 22 22 F 1.35102 * 119.95750 * 179.72388 * 21 19 18 23 23 C 1.38059 * 120.07318 * 359.44980 * 21 19 18 24 24 C 1.50699 * 120.07365 * 180.26964 * 23 21 19 25 25 H 1.09003 * 109.46570 * 299.99715 * 1 2 3 26 26 H 1.08994 * 109.47271 * 59.99722 * 1 2 3 27 27 H 1.09007 * 109.46988 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47057 * 240.00075 * 2 1 3 29 29 H 1.08999 * 109.47009 * 120.00667 * 2 1 3 30 30 H 0.97001 * 120.00130 * 179.97438 * 8 7 5 31 31 H 0.97005 * 120.00023 * 94.99579 * 13 3 2 32 32 H 1.08004 * 120.03379 * 359.97438 * 17 16 14 33 33 H 1.08002 * 119.92822 * 180.02562 * 18 17 16 34 34 H 1.08991 * 109.47346 * 263.66529 * 24 23 21 35 35 H 1.09005 * 109.46655 * 23.66293 * 24 23 21 36 36 H 1.08995 * 109.47124 * 143.66150 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1728 9 14 6.0050 0.8812 -1.3819 10 1 6.5987 1.5473 -0.1949 11 1 6.4970 -0.5174 -1.4631 12 1 6.3989 1.6168 -2.6103 13 7 1.6525 2.0974 1.2518 14 6 0.4351 2.6644 1.3671 15 8 -0.3411 2.6326 0.4321 16 6 0.0442 3.3243 2.6296 17 6 0.8790 3.2500 3.7467 18 6 0.5102 3.8668 4.9230 19 6 -0.6871 4.5611 4.9994 20 9 -1.0431 5.1641 6.1547 21 6 -1.5242 4.6341 3.8941 22 9 -2.6926 5.3075 3.9761 23 6 -1.1613 4.0242 2.7099 24 6 -2.0671 4.1086 1.5085 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8292 -0.0612 -2.9499 31 1 2.2720 2.1230 1.9978 32 1 1.8121 2.7092 3.6892 33 1 1.1560 3.8097 5.7868 34 1 -2.6840 3.2116 1.4548 35 1 -2.7082 4.9856 1.5978 36 1 -1.4643 4.1897 0.6040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148605932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:20 Heat of formation + Delta-G solvation = -108.218860 kcal Electronic energy + Delta-G solvation = -22239.319469 eV Core-core repulsion = 18552.320265 eV Total energy + Delta-G solvation = -3686.999204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.59318 -48.66429 -40.09341 -37.98124 -35.27619 -32.95947 -32.31940 -31.40425 -30.07219 -27.55560 -26.72964 -23.92944 -23.01804 -22.09606 -20.66821 -19.51839 -18.26853 -17.66515 -17.08478 -16.56874 -16.48473 -15.57570 -15.41098 -15.11148 -14.71536 -14.58411 -14.53366 -13.77249 -13.41322 -13.22793 -13.07554 -12.83601 -12.59885 -12.16805 -11.96894 -11.75076 -11.53907 -11.34446 -11.28580 -11.00060 -10.89127 -10.35364 -10.25504 -9.68448 -9.14888 -9.06499 -8.94376 -8.85716 -8.57333 -7.92441 -6.18927 -4.28750 0.50559 0.85662 2.83908 3.19652 3.28015 3.29866 3.54655 3.81617 3.85523 4.21727 4.30313 4.41699 4.72812 4.83520 4.97123 5.13193 5.44671 5.55574 5.64339 5.77944 5.87653 5.91177 6.12701 6.33527 6.39253 6.42579 6.57916 6.65412 6.97608 7.12451 7.26948 7.33430 7.54198 7.64289 7.81761 8.10389 8.51488 8.68212 8.95986 9.38695 10.86368 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.026226 B = 0.004288 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.403325 B = 6528.378524 C = 7163.590840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.697 5.697 14 C 0.543 3.457 15 O -0.532 6.532 16 C -0.111 4.111 17 C -0.065 4.065 18 C -0.141 4.141 19 C 0.085 3.915 20 F -0.129 7.129 21 C 0.051 3.949 22 F -0.127 7.127 23 C -0.033 4.033 24 C -0.121 4.121 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.023 0.977 28 H 0.100 0.900 29 H 0.032 0.968 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.727 5.424 12.064 14.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.345 5.345 14 C 0.328 3.672 15 O -0.411 6.411 16 C -0.114 4.114 17 C -0.084 4.084 18 C -0.160 4.160 19 C 0.064 3.936 20 F -0.107 7.107 21 C 0.031 3.969 22 F -0.105 7.105 23 C -0.035 4.035 24 C -0.177 4.177 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.118 0.882 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.290 5.327 11.216 13.919 hybrid contribution 1.063 0.195 0.686 1.280 sum -5.227 5.522 11.902 14.124 Atomic orbital electron populations 1.21850 0.98284 0.98183 1.01232 1.21945 0.92668 0.99637 1.02428 1.18867 0.94395 0.89244 0.80625 0.92977 1.21240 0.90562 1.39207 1.06420 0.91999 1.24872 0.98638 0.94707 0.95348 1.69894 1.35104 1.37477 1.09325 0.86403 0.84788 0.77808 0.78167 1.19735 1.20853 1.20860 1.46493 1.14107 1.55135 1.18776 1.17869 0.83256 0.79698 0.86364 1.90714 1.51165 1.59281 1.39986 1.20154 0.94681 1.00709 0.95871 1.21328 0.99307 0.96749 0.91002 1.20955 0.95394 0.99489 1.00181 1.17851 0.95431 0.98645 0.81629 1.91523 1.91856 1.81152 1.46217 1.17359 0.84537 1.00798 0.94190 1.91504 1.44569 1.77860 1.96601 1.19989 0.95203 0.94030 0.94240 1.21080 0.98439 1.02149 0.96021 0.94291 0.93041 0.95795 0.88159 0.94961 0.92540 0.77866 0.83562 0.83279 0.89849 0.92215 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.16 0.32 -2.59 16 2 C -0.13 -2.94 5.45 -26.73 -0.15 -3.08 16 3 C 0.27 6.35 2.24 -69.08 -0.15 6.19 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.37 8.73 -34.44 -0.30 -13.67 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.71 11.29 55.43 0.63 -23.08 16 9 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.70 -13.22 4.97 -55.92 -0.28 -13.50 16 14 C 0.54 9.88 6.26 -12.38 -0.08 9.81 16 15 O -0.53 -11.02 10.48 5.31 0.06 -10.96 16 16 C -0.11 -1.62 5.87 -104.97 -0.62 -2.24 16 17 C -0.06 -0.75 9.52 -39.20 -0.37 -1.13 16 18 C -0.14 -1.48 10.01 -39.59 -0.40 -1.87 16 19 C 0.08 1.05 7.31 -39.22 -0.29 0.76 16 20 F -0.13 -1.61 17.17 2.25 0.04 -1.58 16 21 C 0.05 0.70 7.24 -39.42 -0.29 0.41 16 22 F -0.13 -1.76 16.28 2.25 0.04 -1.73 16 23 C -0.03 -0.47 5.92 -104.17 -0.62 -1.08 16 24 C -0.12 -1.72 8.60 36.01 0.31 -1.41 16 25 H 0.04 0.79 5.65 -51.93 -0.29 0.50 16 26 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 27 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.10 2.58 5.95 -51.93 -0.31 2.27 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.39 6.25 6.61 -40.82 -0.27 5.98 16 32 H 0.15 1.40 6.45 -52.48 -0.34 1.07 16 33 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 0.75 7.46 -51.93 -0.39 0.36 16 36 H 0.11 1.78 5.86 -51.93 -0.30 1.48 16 LS Contribution 303.92 15.07 4.58 4.58 Total: -1.00 -27.57 303.92 -6.62 -34.19 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -3.93 Total: 5.54 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -2.72 Total: -8.27 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.35 Total: -36.58 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.06 Total: -10.96 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.08 Total: -3.30 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.57 -6.62 -34.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148605932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.029 kcal (2) G-P(sol) polarization free energy of solvation -27.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds