Wall clock time and date at job start Tue Mar 31 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 C 1.38316 * 120.83708 * 59.71712 * 4 2 1 6 6 Cl 1.73602 * 120.41755 * 0.02767 * 5 4 2 7 7 N 1.32664 * 119.16579 * 179.74461 * 5 4 2 8 8 C 1.31788 * 120.98334 * 0.56690 * 7 5 4 9 9 N 1.31737 * 121.84584 * 359.68709 * 8 7 5 10 10 C 1.33032 * 120.72511 * 0.02562 * 9 8 7 11 11 N 1.38567 * 120.52146 * 179.97438 * 10 9 8 12 12 C 1.46496 * 119.99827 * 0.02591 * 11 10 9 13 13 C 1.53006 * 109.47051 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47412 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.46839 * 180.02562 * 14 13 12 16 16 H 1.07992 * 120.00487 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99464 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00110 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99641 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47193 * 60.00023 * 19 17 15 21 21 H 1.48497 * 109.47064 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47405 * 299.99652 * 19 17 15 23 23 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 24 24 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 25 25 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 27 27 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 28 28 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 30 30 H 1.08005 * 119.07301 * 179.70499 * 8 7 5 31 31 H 0.97000 * 119.99555 * 180.02562 * 11 10 9 32 32 H 1.08999 * 109.47191 * 299.99360 * 12 11 10 33 33 H 1.08996 * 109.47343 * 60.00108 * 12 11 10 34 34 H 1.09003 * 109.47058 * 300.00612 * 13 12 11 35 35 H 1.09007 * 109.46751 * 59.99531 * 13 12 11 36 36 H 1.08999 * 109.46980 * 299.99789 * 14 13 12 37 37 H 1.08997 * 109.46809 * 59.99943 * 14 13 12 38 38 H 0.97008 * 120.00045 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.7040 -0.2562 -2.4951 6 17 0.7027 1.1482 -2.6921 7 7 2.1686 -0.9039 -3.5555 8 6 2.9250 -1.9744 -3.4190 9 7 3.2576 -2.4440 -2.2339 10 6 2.8353 -1.8462 -1.1230 11 7 3.1872 -2.3441 0.1214 12 6 4.0311 -3.5374 0.2209 13 6 4.2687 -3.8725 1.6948 14 6 5.1505 -5.1185 1.7989 15 6 5.3839 -5.4488 3.2505 16 1 4.9474 -4.8316 4.0218 17 6 6.1558 -6.5384 3.5940 18 7 6.6878 -7.2897 2.6549 19 14 6.4457 -6.9475 5.3935 20 1 5.1433 -7.2065 6.0583 21 1 7.3015 -8.1569 5.4945 22 1 7.1222 -5.8049 6.0582 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 0.8900 27 1 1.6768 1.9562 0.8901 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 3.2825 -2.4807 -4.3035 31 1 2.8747 -1.9024 0.9265 32 1 3.5339 -4.3757 -0.2670 33 1 4.9872 -3.3480 -0.2669 34 1 4.7659 -3.0341 2.1825 35 1 3.3126 -4.0617 2.1830 36 1 4.6536 -5.9571 1.3111 37 1 6.1064 -4.9287 1.3107 38 1 7.2305 -8.0566 2.8966 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157643464.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:03 Heat of formation + Delta-G solvation = 22.619452 kcal Electronic energy + Delta-G solvation = -19586.130555 eV Core-core repulsion = 16488.894358 eV Total energy + Delta-G solvation = -3097.236197 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.23422 -37.33875 -37.05902 -35.77727 -33.97308 -32.60876 -31.39773 -29.82237 -27.34750 -26.72971 -24.91484 -23.73030 -22.38429 -20.94073 -20.57241 -18.39056 -17.76678 -16.36189 -15.72434 -15.55314 -15.37253 -14.64927 -14.61077 -14.41684 -14.22145 -13.97084 -13.59277 -13.05371 -12.44246 -12.39814 -12.37404 -12.01539 -11.86109 -11.65426 -11.39689 -11.00358 -10.89077 -10.80734 -10.69951 -10.64674 -10.17550 -9.89373 -9.64449 -9.58733 -9.30410 -9.18716 -8.41491 -8.08589 -6.06242 -4.09629 0.76765 1.18805 1.47492 3.06586 3.29098 3.34131 3.35992 3.69367 4.09906 4.38034 4.40246 4.43978 4.61930 4.84925 4.96122 5.16617 5.29646 5.42267 5.46154 5.57772 5.65799 5.68624 5.69053 5.81639 5.97403 6.05313 6.07473 6.10472 6.50751 6.55040 6.62927 6.89891 7.08635 7.46242 7.57376 7.69471 7.91814 8.14201 8.32775 8.96599 9.54832 11.04942 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.031233 B = 0.003130 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.260117 B = 8944.492196 C = 9639.073227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.037 4.037 3 C -0.157 4.157 4 C -0.237 4.237 5 C 0.250 3.750 6 Cl -0.018 7.018 7 N -0.566 5.566 8 C 0.354 3.646 9 N -0.567 5.567 10 C 0.456 3.544 11 N -0.696 5.696 12 C 0.123 3.877 13 C -0.123 4.123 14 C 0.026 3.974 15 C -0.525 4.525 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.203 0.797 31 H 0.410 0.590 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.666 16.466 -9.042 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.057 4.057 3 C -0.214 4.214 4 C -0.249 4.249 5 C 0.082 3.918 6 Cl 0.011 6.989 7 N -0.288 5.288 8 C 0.064 3.936 9 N -0.291 5.291 10 C 0.209 3.791 11 N -0.327 5.327 12 C 0.001 3.999 13 C -0.161 4.161 14 C -0.011 4.011 15 C -0.563 4.563 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.219 0.781 31 H 0.249 0.751 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.177 15.781 -9.827 21.692 hybrid contribution -0.207 0.295 1.896 1.930 sum -11.384 16.076 -7.931 21.235 Atomic orbital electron populations 1.22094 0.93888 1.02384 1.03151 1.19804 0.96372 0.95956 0.93605 1.22077 1.01266 0.94990 1.03106 1.20527 1.07714 1.00716 0.95941 1.21336 0.91859 0.89662 0.88972 1.98360 1.66005 1.37434 1.97139 1.67776 1.16501 1.11377 1.33121 1.24639 0.87546 0.87139 0.94248 1.68082 1.28472 1.34434 0.98146 1.18351 0.86611 0.86732 0.87401 1.45128 1.53392 1.31006 1.03211 1.21743 0.93664 0.85044 0.99459 1.21924 1.01124 1.01346 0.91721 1.18999 0.94182 0.90698 0.97235 1.21156 1.31398 1.11637 0.92134 0.92710 1.25020 0.95699 0.96227 0.97418 1.69948 1.33728 1.17188 1.32358 0.86640 0.78211 0.77801 0.85247 1.20224 1.21229 1.20221 0.91961 0.91248 0.92632 0.90502 0.91955 0.92630 0.91300 0.78061 0.75090 0.91448 0.91456 0.92719 0.92715 0.96234 0.96232 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.95 37.16 0.33 -1.09 16 2 C -0.04 -0.37 2.96 -91.77 -0.27 -0.64 16 3 C -0.16 -1.41 8.96 37.16 0.33 -1.08 16 4 C -0.24 -2.91 4.81 -104.11 -0.50 -3.41 16 5 C 0.25 3.14 7.05 -17.16 -0.12 3.02 16 6 Cl -0.02 -0.19 22.95 -51.86 -1.19 -1.38 16 7 N -0.57 -7.45 10.43 -11.76 -0.12 -7.57 16 8 C 0.35 4.41 12.28 -92.21 -1.13 3.28 16 9 N -0.57 -8.23 9.70 -13.83 -0.13 -8.36 16 10 C 0.46 6.36 7.49 -154.76 -1.16 5.20 16 11 N -0.70 -9.55 5.64 -60.28 -0.34 -9.89 16 12 C 0.12 2.01 5.73 -4.04 -0.02 1.99 16 13 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 14 C 0.03 0.65 4.97 -27.89 -0.14 0.51 16 15 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 19 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.63 5.04 -51.93 -0.26 0.37 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.72 5.81 -51.93 -0.30 0.42 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.62 5.10 -51.93 -0.26 0.36 16 30 H 0.20 1.78 8.06 -52.48 -0.42 1.36 16 31 H 0.41 4.84 6.22 -40.82 -0.25 4.58 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 323.61 15.07 4.88 4.88 Total: -1.00 -30.16 323.61 -9.70 -39.86 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.27 Total: -0.24 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -3.23 Total: -7.84 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.14 Total: -51.46 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.19 Total: -1.38 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.16 -9.70 -39.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157643464.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.481 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds