Wall clock time and date at job start Tue Mar 31 2020 05:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86803 * 120.00255 * 2 1 4 4 H 1.48493 * 109.47344 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47062 * 300.00659 * 3 2 1 6 6 H 1.48503 * 109.46502 * 60.00174 * 3 2 1 7 7 C 1.40058 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00488 * 174.92579 * 7 2 1 9 9 C 1.41272 * 119.99615 * 355.20506 * 7 2 1 10 10 C 1.40720 * 120.15793 * 184.52492 * 9 7 2 11 11 N 1.31908 * 119.92654 * 179.70354 * 10 9 7 12 12 C 1.32150 * 120.27564 * 0.56883 * 11 10 9 13 13 C 1.39920 * 120.32014 * 359.70057 * 12 11 10 14 14 N 1.38830 * 119.96912 * 180.02562 * 13 12 11 15 15 C 1.46504 * 119.99839 * 4.50150 * 14 13 12 16 16 C 1.50700 * 115.54608 * 293.94466 * 15 14 13 17 17 C 1.38604 * 120.07887 * 336.12391 * 16 15 14 18 18 C 1.38887 * 117.96664 * 179.97438 * 17 16 15 19 19 C 1.38604 * 117.97012 * 359.97438 * 18 17 16 20 20 N 1.31930 * 119.84673 * 359.97438 * 19 18 17 21 21 N 1.28350 * 122.18524 * 359.71658 * 20 19 18 22 22 C 1.53003 * 117.49629 * 148.28147 * 15 14 13 23 23 C 1.52994 * 117.50014 * 79.62012 * 15 14 13 24 24 N 1.32261 * 120.06185 * 0.02562 * 13 12 11 25 25 H 0.97003 * 119.99860 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.03338 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.84516 * 179.68674 * 12 11 10 28 28 H 0.96998 * 120.00044 * 184.49479 * 14 13 12 29 29 H 1.08001 * 121.01887 * 359.97438 * 17 16 15 30 30 H 1.08003 * 121.01456 * 180.02562 * 18 17 16 31 31 H 1.07997 * 120.07524 * 180.02562 * 19 18 17 32 32 H 1.08996 * 117.50217 * 359.97438 * 22 15 14 33 33 H 1.08997 * 117.49100 * 145.01758 * 22 15 14 34 34 H 1.08998 * 117.49859 * 214.97795 * 23 15 14 35 35 H 1.09005 * 117.49975 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7013 1.3464 0.0006 5 1 1.8825 2.3965 -1.2124 6 1 1.8826 2.3963 1.2126 7 6 2.0077 -1.2129 -0.0005 8 1 3.0845 -1.2147 -0.0833 9 6 1.3050 -2.4342 0.1012 10 6 2.0089 -3.6490 0.1968 11 7 1.3482 -4.7862 0.2975 12 6 0.0267 -4.7913 0.2977 13 6 -0.6842 -3.5904 0.1975 14 7 -2.0725 -3.6041 0.1990 15 6 -2.7923 -4.8634 0.4044 16 6 -2.6304 -5.8900 -0.6869 17 6 -2.2884 -5.4920 -1.9698 18 6 -2.1501 -6.4747 -2.9415 19 6 -2.3621 -7.7926 -2.5681 20 7 -2.6839 -8.0779 -1.3209 21 7 -2.8060 -7.1704 -0.4215 22 6 -4.1453 -4.7959 1.1156 23 6 -2.9272 -5.3740 1.8403 24 7 -0.0350 -2.4421 0.1014 25 1 -0.4850 0.8401 0.0004 26 1 3.0889 -3.6497 0.1921 27 1 -0.5072 -5.7269 0.3754 28 1 -2.5658 -2.7799 0.0642 29 1 -2.1342 -4.4496 -2.2067 30 1 -1.8847 -6.2198 -3.9569 31 1 -2.2632 -8.5840 -3.2962 32 1 -4.4996 -3.8146 1.4311 33 1 -4.9180 -5.4943 0.7944 34 1 -2.8991 -6.4525 1.9957 35 1 -2.4799 -4.7732 2.6322 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157719503.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:33 Heat of formation + Delta-G solvation = 140.446691 kcal Electronic energy + Delta-G solvation = -21507.053419 eV Core-core repulsion = 18313.819101 eV Total energy + Delta-G solvation = -3193.234319 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03062 -39.08235 -37.68812 -34.06745 -33.46548 -32.90380 -31.95010 -31.26245 -28.75839 -25.92053 -24.95931 -24.37121 -22.71915 -22.00908 -21.90742 -20.21668 -17.71701 -17.14081 -16.94752 -16.63340 -16.12916 -15.26508 -15.13044 -14.82490 -14.55762 -14.44600 -13.96197 -13.33911 -13.07435 -12.98556 -12.73228 -11.61186 -11.50299 -11.43153 -11.40722 -11.12973 -10.94032 -10.74832 -10.72520 -10.39559 -10.11217 -9.94788 -9.76736 -9.58904 -9.45491 -9.22698 -8.45088 -7.46425 -6.89646 -6.52099 -4.71880 0.92644 0.99411 2.61774 3.00441 3.02419 3.05208 3.21230 3.45072 3.53144 3.82328 4.10179 4.18391 4.44090 4.64500 4.69128 4.84427 5.04047 5.09495 5.14660 5.22929 5.60537 5.67305 5.82724 5.94344 6.05712 6.09937 6.13052 6.26556 6.30192 6.33319 6.44035 6.74739 6.96544 7.06401 7.52167 7.84838 7.95886 8.31472 8.48318 8.76414 8.82050 9.35514 9.91086 10.11511 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.023995 B = 0.004814 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.609734 B = 5815.289046 C = 6146.607888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.068 3.932 3 Si 0.910 3.090 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.415 4.415 8 H 0.091 0.909 9 C 0.244 3.756 10 C -0.104 4.104 11 N -0.408 5.408 12 C -0.158 4.158 13 C 0.371 3.629 14 N -0.695 5.695 15 C 0.157 3.843 16 C 0.112 3.888 17 C -0.090 4.090 18 C -0.120 4.120 19 C 0.029 3.971 20 N -0.244 5.244 21 N -0.241 5.241 22 C -0.150 4.150 23 C -0.154 4.154 24 N -0.504 5.504 25 H 0.274 0.726 26 H 0.130 0.870 27 H 0.117 0.883 28 H 0.403 0.597 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.169 0.831 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.831 -4.572 -3.620 9.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.447 4.447 8 H 0.109 0.891 9 C 0.116 3.884 10 C -0.274 4.274 11 N -0.119 5.119 12 C -0.320 4.320 13 C 0.129 3.871 14 N -0.332 5.332 15 C 0.064 3.936 16 C -0.034 4.034 17 C -0.119 4.119 18 C -0.149 4.149 19 C -0.135 4.135 20 N -0.085 5.085 21 N -0.084 5.084 22 C -0.188 4.188 23 C -0.193 4.193 24 N -0.230 5.230 25 H 0.085 0.915 26 H 0.148 0.852 27 H 0.135 0.865 28 H 0.240 0.760 29 H 0.167 0.833 30 H 0.165 0.835 31 H 0.186 0.814 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.130 0.870 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.404 -5.809 -2.482 10.514 hybrid contribution 0.663 2.258 -1.317 2.697 sum -7.741 -3.551 -3.799 9.326 Atomic orbital electron populations 1.70104 1.07365 1.27959 1.27690 1.26124 0.94947 1.01332 0.93397 0.86218 0.80990 0.80752 0.78638 1.18144 1.19773 1.19714 1.19670 0.94849 0.89146 1.41079 0.89085 1.19093 0.87575 0.93288 0.88457 1.22951 0.99034 0.89185 1.16214 1.67539 1.08172 1.30357 1.05872 1.21944 0.90600 0.95642 1.23792 1.19409 0.84502 0.92017 0.91153 1.43307 1.02459 1.06222 1.81166 1.18240 0.98313 0.85986 0.91063 1.22076 0.94364 0.93260 0.93702 1.22204 0.94693 1.02167 0.92861 1.22387 0.97566 0.93598 1.01338 1.24208 0.96622 0.96659 0.96023 1.72984 1.09186 1.26638 0.99644 1.72779 1.11343 0.98482 1.25815 1.23314 0.90186 1.03340 1.01989 1.23447 0.99629 1.02448 0.93756 1.69009 1.08337 1.22128 1.23514 0.91511 0.85223 0.86524 0.75972 0.83348 0.83457 0.81379 0.87641 0.87852 0.86993 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.67 11.50 55.55 0.64 -17.03 16 2 C 0.07 1.64 5.49 -17.34 -0.10 1.55 16 3 Si 0.91 17.57 29.56 -169.99 -5.03 12.55 16 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.41 -10.58 9.15 -37.75 -0.35 -10.92 16 8 H 0.09 2.15 7.85 -52.49 -0.41 1.74 16 9 C 0.24 6.53 6.54 -84.83 -0.56 5.97 16 10 C -0.10 -2.66 10.97 -16.58 -0.18 -2.85 16 11 N -0.41 -10.51 10.47 -12.11 -0.13 -10.63 16 12 C -0.16 -3.83 9.96 -16.79 -0.17 -3.99 16 13 C 0.37 8.68 7.36 -155.01 -1.14 7.54 16 14 N -0.69 -12.98 4.86 -48.67 -0.24 -13.21 16 15 C 0.16 2.50 1.74 -132.97 -0.23 2.27 16 16 C 0.11 1.82 4.58 -82.41 -0.38 1.44 16 17 C -0.09 -1.39 9.15 -39.21 -0.36 -1.74 16 18 C -0.12 -1.52 10.21 -39.21 -0.40 -1.92 16 19 C 0.03 0.37 11.31 -17.37 -0.20 0.17 16 20 N -0.24 -3.86 11.50 30.55 0.35 -3.51 16 21 N -0.24 -4.05 10.53 33.59 0.35 -3.70 16 22 C -0.15 -1.88 10.16 -26.69 -0.27 -2.16 16 23 C -0.15 -2.28 9.91 -26.69 -0.26 -2.54 16 24 N -0.50 -13.22 8.09 -10.14 -0.08 -13.30 16 25 H 0.27 6.13 8.29 -40.82 -0.34 5.80 16 26 H 0.13 3.05 8.06 -52.49 -0.42 2.62 16 27 H 0.12 2.73 5.79 -52.49 -0.30 2.43 16 28 H 0.40 7.23 8.95 -40.82 -0.37 6.87 16 29 H 0.15 2.35 7.63 -52.49 -0.40 1.95 16 30 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.11 1.64 7.60 -51.93 -0.39 1.25 16 35 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 309.11 15.07 4.66 4.66 Total: -1.00 -30.50 309.11 -7.60 -38.11 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -3.55 Total: 13.26 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -4.59 Total: -7.18 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.90 Total: -61.39 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.50 -7.60 -38.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157719503.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.552 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds