Wall clock time and date at job start Tue Mar 31 2020 06:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31795 * 119.08448 * 2 1 4 4 C 1.32525 * 121.00446 * 179.97438 * 3 2 1 5 5 C 1.50709 * 120.40362 * 180.02562 * 4 3 2 6 6 C 1.38160 * 119.19476 * 0.02562 * 4 3 2 7 7 C 1.50706 * 120.83508 * 179.72281 * 6 4 3 8 8 C 1.39579 * 118.33269 * 359.97438 * 6 4 3 9 9 N 1.38755 * 120.52918 * 179.97438 * 8 6 4 10 10 C 1.38446 * 119.99868 * 181.32115 * 9 8 6 11 11 C 1.38942 * 120.00735 * 298.47524 * 10 9 8 12 12 H 1.07994 * 120.00382 * 161.18917 * 11 10 9 13 13 C 1.40863 * 119.99590 * 341.19397 * 11 10 9 14 14 N 1.30327 * 120.00013 * 351.91951 * 13 11 10 15 15 Si 1.86792 * 120.00098 * 171.92613 * 13 11 10 16 16 H 1.48502 * 109.47362 * 59.99804 * 15 13 11 17 17 H 1.48500 * 109.47346 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47187 * 299.99643 * 15 13 11 19 19 C 1.41135 * 119.99737 * 118.47141 * 10 9 8 20 20 C 1.43203 * 119.99993 * 174.13638 * 19 10 9 21 21 N 6.92263 * 97.74867 * 188.85440 * 2 1 3 22 22 C 1.43196 * 119.99792 * 354.14499 * 19 10 9 23 23 N 6.05689 * 125.47403 * 219.42552 * 2 1 3 24 24 N 1.31741 * 119.08342 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47885 * 85.00384 * 1 2 3 26 26 H 1.09000 * 109.47401 * 205.00709 * 1 2 3 27 27 H 1.09005 * 109.47177 * 325.00550 * 1 2 3 28 28 H 1.09002 * 109.46700 * 269.98295 * 5 4 3 29 29 H 1.08997 * 109.46862 * 29.98119 * 5 4 3 30 30 H 1.08993 * 109.46898 * 149.98232 * 5 4 3 31 31 H 1.09000 * 109.47125 * 89.99617 * 7 6 4 32 32 H 1.08997 * 109.47111 * 209.99392 * 7 6 4 33 33 H 1.09004 * 109.46866 * 329.99693 * 7 6 4 34 34 H 0.96999 * 120.00183 * 1.33087 * 9 8 6 35 35 H 0.96998 * 120.00170 * 185.04866 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1518 0.0000 4 6 3.4721 1.1962 0.0005 5 6 4.1909 2.5208 0.0011 6 6 4.1861 0.0133 0.0005 7 6 5.6931 0.0207 -0.0052 8 6 3.4765 -1.1887 0.0005 9 7 4.1475 -2.4032 0.0000 10 6 3.4330 -3.5887 -0.0277 11 6 2.5622 -3.8996 1.0095 12 1 1.7925 -4.6429 0.8639 13 6 2.6835 -3.2450 2.2509 14 7 3.7034 -2.4667 2.4803 15 14 1.3826 -3.4926 3.5683 16 1 1.3091 -4.9317 3.9272 17 1 1.7402 -2.7003 4.7723 18 1 0.0644 -3.0430 3.0530 19 6 3.5891 -4.4816 -1.1095 20 6 2.9485 -5.7620 -1.0792 21 7 2.4403 -6.7777 -1.0558 22 6 4.3881 -4.1072 -2.2372 23 7 5.0220 -3.8102 -3.1326 24 7 2.1473 -1.1513 0.0005 25 1 -0.3635 0.0895 -1.0237 26 1 -0.3634 -0.9313 0.4344 27 1 -0.3634 0.8419 0.5894 28 1 4.3648 2.8402 -1.0265 29 1 3.5815 3.2645 0.5146 30 1 5.1460 2.4157 0.5155 31 1 6.0603 0.0249 1.0211 32 1 6.0588 -0.8687 -0.5183 33 1 6.0501 0.9113 -0.5225 34 1 5.1171 -2.4217 0.0191 35 1 3.8259 -2.0742 3.3588 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158214730.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:40 Heat of formation + Delta-G solvation = 94.895187 kcal Electronic energy + Delta-G solvation = -21744.151074 eV Core-core repulsion = 18548.941494 eV Total energy + Delta-G solvation = -3195.209580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.59340 -37.58499 -35.36804 -34.71670 -34.54233 -33.94722 -32.23053 -29.76039 -29.68121 -28.49312 -27.09641 -25.15574 -22.63609 -21.28466 -20.87997 -19.09168 -17.65067 -17.13408 -16.36302 -16.15051 -15.03236 -14.89277 -14.11564 -13.81852 -13.64512 -13.28055 -12.85318 -12.75482 -12.60468 -12.57646 -12.30994 -12.28742 -12.02544 -11.96354 -11.82547 -11.70383 -11.62956 -11.56068 -11.46466 -11.06324 -10.88398 -10.83969 -10.31893 -10.13645 -10.03568 -8.97854 -8.48157 -8.25544 -7.82122 -7.08937 -5.40641 1.58201 1.84582 2.35240 2.69953 2.73317 2.91703 3.39850 3.71085 3.90047 4.07461 4.26920 4.33092 4.44039 4.50061 4.79835 5.19197 5.25073 5.30601 5.42106 5.62916 5.66611 5.69465 5.81358 5.87231 5.93336 5.96801 6.06975 6.14851 6.20258 6.29493 6.40227 6.48050 6.91294 7.10148 7.30721 7.50007 7.72706 7.82444 8.21412 8.39994 8.96753 9.01012 9.15949 9.20134 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.012403 B = 0.008371 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.919895 B = 3344.133199 C = 4422.206156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.345 3.655 3 N -0.574 5.574 4 C 0.189 3.811 5 C -0.099 4.099 6 C -0.262 4.262 7 C -0.090 4.090 8 C 0.485 3.515 9 N -0.626 5.626 10 C 0.377 3.623 11 C -0.339 4.339 12 H 0.110 0.890 13 C 0.079 3.921 14 N -0.727 5.727 15 Si 0.925 3.075 16 H -0.253 1.253 17 H -0.271 1.271 18 H -0.248 1.248 19 C -0.316 4.316 20 C 0.327 3.673 21 N -0.536 5.536 22 C 0.310 3.690 23 N -0.539 5.539 24 N -0.549 5.549 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.410 0.590 35 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 10.763 5.879 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.076 3.924 3 N -0.295 5.295 4 C 0.046 3.954 5 C -0.157 4.157 6 C -0.272 4.272 7 C -0.148 4.148 8 C 0.241 3.759 9 N -0.251 5.251 10 C 0.274 3.726 11 C -0.366 4.366 12 H 0.128 0.872 13 C -0.152 4.152 14 N -0.346 5.346 15 Si 0.747 3.253 16 H -0.177 1.177 17 H -0.195 1.195 18 H -0.172 1.172 19 C -0.335 4.335 20 C 0.019 3.981 21 N -0.219 5.219 22 C 0.003 3.997 23 N -0.222 5.222 24 N -0.272 5.272 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.250 0.750 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.991 9.726 4.669 10.834 hybrid contribution 0.850 0.175 1.046 1.359 sum -0.141 9.901 5.715 11.433 Atomic orbital electron populations 1.20453 0.86764 1.03461 1.03131 1.22743 0.97293 0.82853 0.89513 1.67964 1.09016 1.30244 1.22242 1.21009 0.89404 0.94417 0.90529 1.20664 0.99491 0.92734 1.02787 1.20534 0.97825 0.93052 1.15833 1.20414 0.90433 1.02090 1.01848 1.17932 0.87934 0.85149 0.84862 1.41366 1.08006 1.01314 1.74397 1.16642 0.86114 0.81230 0.88623 1.20210 1.10065 1.13071 0.93275 0.87240 1.26521 0.96358 0.91214 1.01123 1.69468 1.24217 1.16336 1.24593 0.85990 0.80979 0.80600 0.77772 1.17675 1.19550 1.17158 1.12850 1.27088 0.95062 0.98460 1.24660 0.90728 0.91051 0.91652 1.81050 1.16682 1.13327 1.10805 1.25247 0.90908 0.91981 0.91546 1.81076 1.17685 1.10846 1.12571 1.67903 1.07547 1.29929 1.21860 0.90277 0.89874 0.90482 0.90514 0.90668 0.90657 0.91456 0.92209 0.91760 0.75037 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.32 36.00 0.37 -0.77 16 2 C 0.35 6.30 7.64 -157.24 -1.20 5.10 16 3 N -0.57 -10.14 10.27 -7.06 -0.07 -10.21 16 4 C 0.19 3.07 6.82 -82.32 -0.56 2.51 16 5 C -0.10 -1.17 9.44 36.01 0.34 -0.83 16 6 C -0.26 -4.45 5.93 -104.15 -0.62 -5.07 16 7 C -0.09 -1.22 8.85 36.01 0.32 -0.90 16 8 C 0.49 9.44 5.82 -154.60 -0.90 8.54 16 9 N -0.63 -12.23 3.19 -9.59 -0.03 -12.26 16 10 C 0.38 8.02 5.53 -83.52 -0.46 7.56 16 11 C -0.34 -7.11 7.79 -38.33 -0.30 -7.41 16 12 H 0.11 2.35 7.08 -52.49 -0.37 1.98 16 13 C 0.08 1.52 4.85 -17.20 -0.08 1.44 16 14 N -0.73 -13.81 10.77 55.60 0.60 -13.21 16 15 Si 0.93 15.31 29.58 -169.99 -5.03 10.29 16 16 H -0.25 -4.22 7.11 56.52 0.40 -3.82 16 17 H -0.27 -4.36 7.11 56.52 0.40 -3.96 16 18 H -0.25 -4.16 7.11 56.52 0.40 -3.76 16 19 C -0.32 -7.07 5.88 -104.95 -0.62 -7.69 16 20 C 0.33 7.62 13.94 -22.47 -0.31 7.31 16 21 N -0.54 -12.94 18.54 41.84 0.78 -12.16 16 22 C 0.31 7.13 14.82 -22.46 -0.33 6.80 16 23 N -0.54 -12.81 18.54 41.86 0.78 -12.03 16 24 N -0.55 -11.07 8.67 -9.93 -0.09 -11.15 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.75 6.81 -51.93 -0.35 0.40 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.84 6.69 -51.93 -0.35 0.49 16 33 H 0.06 0.73 6.83 -51.93 -0.35 0.38 16 34 H 0.41 7.47 6.97 -40.82 -0.28 7.19 16 35 H 0.30 5.27 8.29 -40.82 -0.34 4.93 16 LS Contribution 320.03 15.07 4.82 4.82 Total: -1.00 -26.40 320.03 -5.98 -32.38 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -3.38 Total: 6.96 kcal Atomic # 6 Polarization: 20.94 SS G_CDS: -4.36 Total: 16.59 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: 1.96 Total: -71.03 kcal Atomic # 14 Polarization: 15.31 SS G_CDS: -5.03 Total: 10.29 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.40 -5.98 -32.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214730.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.278 kcal (2) G-P(sol) polarization free energy of solvation -26.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds