Wall clock time and date at job start Tue Mar 31 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47096 * 2 1 4 4 C 1.50701 * 109.47237 * 179.97438 * 3 2 1 5 5 N 1.31958 * 120.04743 * 90.00172 * 4 3 2 6 6 C 1.32247 * 120.07907 * 180.02562 * 5 4 3 7 7 C 1.38243 * 120.18068 * 359.97362 * 6 5 4 8 8 N 1.32191 * 120.09880 * 0.02562 * 7 6 5 9 9 C 1.32683 * 119.91921 * 0.02562 * 8 7 6 10 10 N 1.39157 * 120.08644 * 179.97438 * 9 8 7 11 11 C 1.38373 * 120.00116 * 6.21886 * 10 9 8 12 12 C 1.38969 * 120.00493 * 302.32724 * 11 10 9 13 13 H 1.07994 * 120.00249 * 152.57409 * 12 11 10 14 14 C 1.40852 * 119.99720 * 332.58610 * 12 11 10 15 15 N 1.30328 * 119.99852 * 169.57173 * 14 12 11 16 16 Si 1.86801 * 119.99892 * 349.56491 * 14 12 11 17 17 H 1.48498 * 109.46841 * 91.41048 * 16 14 12 18 18 H 1.48497 * 109.47299 * 211.41388 * 16 14 12 19 19 H 1.48503 * 109.47215 * 331.41511 * 16 14 12 20 20 C 1.41149 * 120.00041 * 122.33455 * 11 10 9 21 21 C 1.43201 * 120.00255 * 185.25771 * 20 11 10 22 22 N 8.18938 * 117.72735 * 65.64446 * 2 1 3 23 23 C 1.43199 * 120.00126 * 5.25253 * 20 11 10 24 24 N 5.79370 * 94.23173 * 43.50313 * 2 1 3 25 25 H 1.09004 * 109.46540 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47610 * 299.99661 * 1 2 3 27 27 H 1.09001 * 109.46982 * 60.00600 * 1 2 3 28 28 H 1.09000 * 109.47625 * 239.99871 * 2 1 3 29 29 H 1.08998 * 109.47467 * 119.99493 * 2 1 3 30 30 H 1.09000 * 109.46989 * 59.99482 * 3 2 1 31 31 H 1.08998 * 109.46548 * 300.00056 * 3 2 1 32 32 H 1.07995 * 119.90681 * 179.97438 * 6 5 4 33 33 H 1.07996 * 119.94294 * 179.74959 * 7 6 5 34 34 H 0.97000 * 119.99626 * 186.21407 * 10 9 8 35 35 H 0.96999 * 119.99465 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.2082 1.4425 -1.1413 6 6 5.5307 1.4420 -1.1415 7 6 6.2258 1.4422 0.0534 8 7 5.5706 1.4423 1.2015 9 6 4.2438 1.4418 1.2063 10 7 3.5505 1.4414 2.4129 11 6 4.2387 1.5713 3.6063 12 6 5.2353 0.6608 3.9366 13 1 6.0477 0.9600 4.5822 14 6 5.1858 -0.6522 3.4291 15 7 6.2125 -1.4430 3.5668 16 14 3.6486 -1.2599 2.5591 17 1 3.7685 -0.9989 1.1022 18 1 3.4934 -2.7187 2.7895 19 1 2.4618 -0.5453 3.0939 20 6 3.9284 2.6287 4.4884 21 6 4.7140 2.8306 5.6685 22 7 5.3402 2.9895 6.6039 23 6 2.8281 3.4996 4.2031 24 7 1.9575 4.1909 3.9775 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 6.0690 1.4415 -2.0777 33 1 7.3058 1.4377 0.0488 34 1 2.5848 1.3500 2.4173 35 1 6.1783 -2.3474 3.2176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158217898.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:55 Heat of formation + Delta-G solvation = 106.067230 kcal Electronic energy + Delta-G solvation = -21869.107797 eV Core-core repulsion = 18674.382673 eV Total energy + Delta-G solvation = -3194.725124 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.05398 -37.77958 -35.68740 -35.37757 -34.76509 -34.09044 -33.13063 -31.55008 -29.25076 -27.38972 -27.09743 -23.94317 -23.05415 -21.37900 -21.19458 -19.25048 -18.34136 -17.53791 -16.60920 -16.38178 -15.96252 -15.36753 -14.93120 -14.78650 -14.29990 -13.46035 -13.36852 -13.03954 -12.90023 -12.75690 -12.59025 -12.20592 -12.11883 -11.81482 -11.68684 -11.58476 -11.54199 -11.32976 -11.18449 -11.09793 -11.01001 -10.76558 -10.71159 -10.47309 -10.21865 -9.53350 -8.72070 -8.45238 -7.79465 -7.37148 -5.38435 1.16844 1.51453 2.04813 2.56370 2.70409 2.72778 3.25904 3.36475 3.80509 4.01460 4.03248 4.20791 4.28992 4.33848 4.65368 4.71060 4.99664 5.04405 5.10527 5.14018 5.40163 5.41976 5.51091 5.61575 5.70873 5.75571 5.79545 6.02130 6.11197 6.14432 6.23919 6.35057 6.49668 6.94742 7.16071 7.34310 7.49266 7.73567 7.90121 8.03786 8.35054 8.87736 9.13013 9.15855 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.008304 C = 0.007391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.684311 B = 3371.025611 C = 3787.233140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.064 4.064 4 C 0.027 3.973 5 N -0.407 5.407 6 C -0.021 4.021 7 C 0.096 3.904 8 N -0.453 5.453 9 C 0.364 3.636 10 N -0.662 5.662 11 C 0.334 3.666 12 C -0.317 4.317 13 H 0.122 0.878 14 C 0.080 3.920 15 N -0.724 5.724 16 Si 0.919 3.081 17 H -0.253 1.253 18 H -0.282 1.282 19 H -0.249 1.249 20 C -0.304 4.304 21 C 0.325 3.675 22 N -0.528 5.528 23 C 0.307 3.693 24 N -0.534 5.534 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.162 0.838 33 H 0.167 0.833 34 H 0.411 0.589 35 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.465 -5.315 -12.025 13.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.103 4.103 4 C -0.122 4.122 5 N -0.121 5.121 6 C -0.182 4.182 7 C -0.066 4.066 8 N -0.173 5.173 9 C 0.127 3.873 10 N -0.294 5.294 11 C 0.232 3.768 12 C -0.343 4.343 13 H 0.140 0.860 14 C -0.152 4.152 15 N -0.341 5.341 16 Si 0.745 3.255 17 H -0.178 1.178 18 H -0.209 1.209 19 H -0.174 1.174 20 C -0.323 4.323 21 C 0.017 3.983 22 N -0.211 5.211 23 C 0.000 4.000 24 N -0.216 5.216 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.179 0.821 33 H 0.184 0.816 34 H 0.251 0.749 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.519 -4.220 -10.812 12.128 hybrid contribution -0.457 -0.785 -0.658 1.122 sum -3.976 -5.005 -11.470 13.131 Atomic orbital electron populations 1.21786 0.95088 1.01855 1.02232 1.21722 0.96194 0.95962 1.02566 1.20438 0.88173 0.97831 1.03877 1.21417 0.97299 1.05603 0.87838 1.68013 1.09122 1.07220 1.27788 1.23312 0.90529 1.04816 0.99527 1.23562 1.01482 0.93829 0.87730 1.68282 1.05801 1.13889 1.29307 1.18907 0.89885 0.92377 0.86121 1.42269 1.09097 1.75655 1.02390 1.16782 0.87997 0.90102 0.81940 1.19966 1.05138 0.92196 1.17045 0.85991 1.26695 0.98693 0.96872 0.92945 1.69392 1.29144 1.08247 1.27315 0.86305 0.80766 0.78037 0.80441 1.17842 1.20894 1.17380 1.12666 1.07655 1.10554 1.01420 1.24601 0.91360 0.91481 0.90885 1.81095 1.13666 1.12445 1.13850 1.25148 0.91588 0.91284 0.91957 1.81006 1.15830 1.13361 1.11441 0.92545 0.92320 0.92355 0.91222 0.92447 0.90433 0.89306 0.82086 0.81638 0.74850 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.19 16 2 C -0.13 -1.59 5.63 -26.73 -0.15 -1.74 16 3 C -0.06 -0.88 5.04 -27.88 -0.14 -1.02 16 4 C 0.03 0.44 5.56 -82.16 -0.46 -0.02 16 5 N -0.41 -6.33 10.42 -9.12 -0.09 -6.42 16 6 C -0.02 -0.29 11.21 -17.37 -0.19 -0.48 16 7 C 0.10 1.41 11.22 -17.40 -0.20 1.21 16 8 N -0.45 -8.31 8.48 -12.21 -0.10 -8.42 16 9 C 0.36 6.53 4.55 -154.58 -0.70 5.82 16 10 N -0.66 -12.22 2.11 -9.64 -0.02 -12.24 16 11 C 0.33 6.91 5.13 -83.54 -0.43 6.49 16 12 C -0.32 -6.89 7.95 -38.32 -0.30 -7.20 16 13 H 0.12 2.94 7.33 -52.49 -0.38 2.55 16 14 C 0.08 1.64 5.00 -17.20 -0.09 1.55 16 15 N -0.72 -15.19 13.90 55.60 0.77 -14.41 16 16 Si 0.92 16.34 21.41 -169.99 -3.64 12.70 16 17 H -0.25 -4.41 5.14 56.52 0.29 -4.12 16 18 H -0.28 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.25 -4.22 6.26 56.52 0.35 -3.87 16 20 C -0.30 -6.64 5.88 -104.94 -0.62 -7.26 16 21 C 0.32 7.59 13.98 -22.45 -0.31 7.28 16 22 N -0.53 -12.93 18.54 41.87 0.78 -12.15 16 23 C 0.31 6.74 14.77 -22.53 -0.33 6.40 16 24 N -0.53 -12.02 18.53 41.77 0.77 -11.24 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.79 4.02 -51.93 -0.21 0.58 16 30 H 0.08 1.05 6.66 -51.93 -0.35 0.70 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.17 1.89 8.06 -52.49 -0.42 1.47 16 34 H 0.41 6.96 5.75 -40.82 -0.23 6.73 16 35 H 0.30 5.66 8.28 -40.82 -0.34 5.32 16 LS Contribution 306.61 15.07 4.62 4.62 Total: -1.00 -26.36 306.61 -3.90 -30.26 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -3.43 Total: 7.45 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: -3.56 Total: 9.85 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: 2.10 Total: -64.88 kcal Atomic # 14 Polarization: 16.34 SS G_CDS: -3.64 Total: 12.70 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -26.36 -3.90 -30.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158217898.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.327 kcal (2) G-P(sol) polarization free energy of solvation -26.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds