Wall clock time and date at job start Tue Mar 31 2020 06:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.38412 * 111.00066 * 2 1 4 4 N 1.32744 * 119.43335 * 57.00760 * 3 2 1 5 5 C 1.31470 * 121.73609 * 179.97438 * 4 3 2 6 6 C 1.40795 * 120.39157 * 359.97438 * 5 4 3 7 7 C 1.41196 * 120.56623 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99707 * 326.56316 * 7 6 5 9 9 C 1.39860 * 119.99918 * 146.55923 * 7 6 5 10 10 N 1.30899 * 120.00028 * 2.59784 * 9 7 6 11 11 Si 1.86803 * 119.99900 * 182.59946 * 9 7 6 12 12 H 1.48493 * 109.47440 * 90.00021 * 11 9 7 13 13 H 1.48498 * 109.47085 * 210.00251 * 11 9 7 14 14 H 1.48504 * 109.46781 * 329.99716 * 11 9 7 15 15 C 1.41286 * 118.86578 * 0.02562 * 6 5 4 16 16 C 1.36661 * 118.40219 * 359.97438 * 15 6 5 17 17 Cl 1.73604 * 120.26093 * 180.02562 * 16 15 6 18 18 C 1.46898 * 111.00196 * 123.95860 * 2 1 3 19 19 C 1.52999 * 109.47426 * 182.97489 * 18 2 1 20 20 C 1.53005 * 109.46758 * 302.97536 * 18 2 1 21 21 C 1.52998 * 109.47265 * 62.97218 * 18 2 1 22 22 N 1.46903 * 109.47062 * 60.00429 * 21 18 2 23 23 H 1.08997 * 109.47017 * 63.56351 * 1 2 3 24 24 H 1.09005 * 109.47018 * 183.55977 * 1 2 3 25 25 H 1.08998 * 109.47021 * 303.55843 * 1 2 3 26 26 H 1.07995 * 119.80440 * 180.27798 * 5 4 3 27 27 H 0.97009 * 119.99818 * 179.97438 * 10 9 7 28 28 H 1.08002 * 120.79240 * 179.97438 * 15 6 5 29 29 H 1.09003 * 109.47181 * 65.32928 * 19 18 2 30 30 H 1.08996 * 109.47512 * 185.32804 * 19 18 2 31 31 H 1.08999 * 109.47253 * 305.33289 * 19 18 2 32 32 H 1.08996 * 109.47221 * 53.65971 * 20 18 2 33 33 H 1.09001 * 109.46891 * 173.66762 * 20 18 2 34 34 H 1.09001 * 109.47035 * 293.65586 * 20 18 2 35 35 H 1.09008 * 109.47208 * 180.02562 * 21 18 2 36 36 H 1.08990 * 109.47498 * 299.99785 * 21 18 2 37 37 H 1.00900 * 110.99813 * 179.97438 * 22 21 18 38 38 H 1.00896 * 110.99745 * 303.95093 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9650 1.2922 0.0000 4 7 1.6111 2.1268 0.9697 5 6 2.0554 3.3633 1.0143 6 6 2.9312 3.8418 0.0210 7 6 3.4110 5.1689 0.0656 8 1 2.7840 5.9570 0.4558 9 6 4.6983 5.4629 -0.3955 10 7 5.4392 4.5172 -0.9152 11 14 5.3602 7.2052 -0.2697 12 1 6.0556 7.3779 1.0309 13 1 6.3160 7.4529 -1.3788 14 1 4.2349 8.1700 -0.3613 15 6 3.3216 2.9712 -1.0210 16 6 2.8309 1.6957 -1.0205 17 17 3.2795 0.5853 -2.2774 18 6 1.9955 -0.7661 1.1375 19 6 3.5231 -0.6816 1.1461 20 6 1.4452 -0.1854 2.4418 21 6 1.5663 -2.2290 1.0095 22 7 2.0946 -2.7866 -0.2427 23 1 -0.3633 0.4575 -0.9202 24 1 -0.3633 -1.0257 0.0638 25 1 -0.3633 0.5681 0.8564 26 1 1.7507 4.0145 1.8202 27 1 6.3319 4.7213 -1.2354 28 1 3.9917 3.3057 -1.7991 29 1 3.8290 0.3480 1.3320 30 1 3.9183 -1.3255 1.9317 31 1 3.9104 -1.0069 0.1805 32 1 0.3574 -0.1417 2.3896 33 1 1.7439 -0.8197 3.2764 34 1 1.8426 0.8189 2.5885 35 1 1.9566 -2.7974 1.8539 36 1 0.4781 -2.2893 1.0035 37 1 1.8250 -3.7529 -0.3504 38 1 1.7988 -2.2377 -1.0360 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159061303.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:48 Heat of formation + Delta-G solvation = 33.576878 kcal Electronic energy + Delta-G solvation = -21147.553596 eV Core-core repulsion = 18050.792548 eV Total energy + Delta-G solvation = -3096.761048 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.75225 -37.47261 -35.32253 -34.34340 -33.14171 -31.01608 -30.55901 -29.51223 -27.13392 -25.70443 -24.32700 -24.06871 -21.90188 -21.21235 -18.59424 -17.55765 -15.93683 -15.83338 -15.52516 -15.07988 -14.93212 -14.37724 -14.20262 -13.48159 -13.16223 -12.91781 -12.58138 -12.21211 -12.06087 -11.79944 -11.69549 -11.54216 -11.41330 -11.32971 -11.09181 -10.97127 -10.82420 -10.62682 -10.53478 -10.26603 -10.20555 -9.85637 -9.45539 -8.51854 -8.27379 -8.06231 -7.74971 -7.45063 -6.86101 -4.65945 2.35295 2.74793 2.97800 3.01856 3.02655 3.38859 3.79444 4.40973 4.49344 4.92506 5.26058 5.32494 5.45502 5.71075 5.72923 5.88314 5.92433 5.97890 6.12148 6.16143 6.30652 6.35699 6.49702 6.55828 6.60553 6.68205 6.86881 6.91197 6.99307 7.01865 7.10930 7.46869 7.58548 7.68912 7.78932 7.83933 8.10083 8.32584 8.56405 8.58325 9.31618 10.01672 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.025995 B = 0.005620 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.874552 B = 4981.416950 C = 5424.257387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.455 5.455 3 C 0.161 3.839 4 N -0.472 5.472 5 C -0.007 4.007 6 C 0.070 3.930 7 C -0.445 4.445 8 H 0.084 0.916 9 C 0.069 3.931 10 N -0.797 5.797 11 Si 0.921 3.079 12 H -0.268 1.268 13 H -0.275 1.275 14 H -0.261 1.261 15 C -0.123 4.123 16 C -0.014 4.014 17 Cl -0.095 7.095 18 C 0.116 3.884 19 C -0.122 4.122 20 C -0.173 4.173 21 C 0.079 3.921 22 N -0.841 5.841 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.131 0.869 27 H 0.285 0.715 28 H 0.146 0.854 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.021 0.979 37 H 0.327 0.673 38 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.194 -6.825 1.049 8.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.177 5.177 3 C -0.068 4.068 4 N -0.183 5.183 5 C -0.171 4.171 6 C 0.065 3.935 7 C -0.475 4.475 8 H 0.102 0.898 9 C -0.149 4.149 10 N -0.422 5.422 11 Si 0.745 3.255 12 H -0.193 1.193 13 H -0.200 1.200 14 H -0.184 1.184 15 C -0.150 4.150 16 C -0.045 4.045 17 Cl -0.066 7.066 18 C 0.026 3.974 19 C -0.180 4.180 20 C -0.232 4.232 21 C -0.052 4.052 22 N -0.371 5.371 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.148 0.852 27 H 0.096 0.904 28 H 0.164 0.836 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.138 0.862 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.601 -7.351 1.332 8.293 hybrid contribution -0.268 1.236 -0.138 1.273 sum -3.869 -6.114 1.194 7.333 Atomic orbital electron populations 1.22361 0.88262 1.00190 1.01236 1.59856 1.06839 1.10012 1.40976 1.18470 1.03401 0.90004 0.94892 1.67262 1.23160 1.04946 1.22949 1.22519 1.03690 0.91352 0.99496 1.18506 0.90960 0.94313 0.89727 1.19493 0.98788 0.93788 1.35461 0.89750 1.25983 0.96950 0.99523 0.92422 1.69737 1.09814 1.33789 1.28890 0.86088 0.79295 0.81233 0.78857 1.19293 1.20037 1.18448 1.21627 1.02160 0.91099 1.00131 1.21204 1.00139 0.91648 0.91469 1.98261 1.91821 1.63991 1.52576 1.21037 0.95957 0.91454 0.88902 1.21634 0.93303 1.00783 1.02295 1.22556 1.01021 1.02940 0.96729 1.21809 0.95814 0.94563 0.93032 1.58597 1.67512 1.05766 1.05211 0.92299 0.92682 0.94091 0.85183 0.90426 0.83608 0.93281 0.93709 0.90786 0.93047 0.94051 0.89663 0.91631 0.96141 0.86187 0.83155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 8.59 60.06 0.52 0.96 16 2 N -0.45 -8.22 3.20 -166.01 -0.53 -8.76 16 3 C 0.16 3.44 3.72 -155.05 -0.58 2.86 16 4 N -0.47 -10.44 6.81 -11.75 -0.08 -10.52 16 5 C -0.01 -0.17 10.97 -16.74 -0.18 -0.36 16 6 C 0.07 1.72 5.57 -106.65 -0.59 1.13 16 7 C -0.45 -10.82 9.06 -37.85 -0.34 -11.17 16 8 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 9 C 0.07 1.61 5.42 -17.34 -0.09 1.52 16 10 N -0.80 -19.41 10.61 55.54 0.59 -18.82 16 11 Si 0.92 17.62 29.56 -169.99 -5.02 12.60 16 12 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 13 H -0.28 -5.20 7.11 56.52 0.40 -4.79 16 14 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 15 C -0.12 -3.03 8.50 -38.99 -0.33 -3.36 16 16 C -0.01 -0.32 6.25 -39.57 -0.25 -0.57 16 17 Cl -0.09 -1.91 28.43 -51.86 -1.47 -3.38 16 18 C 0.12 1.94 0.47 -131.60 -0.06 1.87 16 19 C -0.12 -2.25 7.79 37.16 0.29 -1.96 16 20 C -0.17 -2.90 7.51 37.16 0.28 -2.63 16 21 C 0.08 1.11 5.48 -3.82 -0.02 1.09 16 22 N -0.84 -11.36 8.96 -10.37 -0.09 -11.45 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.05 0.77 6.04 -51.93 -0.31 0.46 16 25 H 0.04 0.71 6.07 -51.93 -0.32 0.40 16 26 H 0.13 2.78 8.06 -52.49 -0.42 2.36 16 27 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 28 H 0.15 3.76 6.19 -52.49 -0.32 3.43 16 29 H 0.05 1.04 7.28 -51.93 -0.38 0.66 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.43 7.77 -51.93 -0.40 1.03 16 32 H 0.05 0.83 6.18 -51.93 -0.32 0.51 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.67 5.99 -51.93 -0.31 1.36 16 35 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 36 H 0.02 0.27 6.32 -51.93 -0.33 -0.06 16 37 H 0.33 3.57 9.08 -39.29 -0.36 3.21 16 38 H 0.35 5.17 8.30 -39.29 -0.33 4.84 16 LS Contribution 314.21 15.07 4.74 4.74 Total: -1.00 -24.66 314.21 -8.28 -32.94 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -5.04 Total: 13.27 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -1.37 Total: -10.61 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.12 Total: -49.55 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.02 Total: 12.60 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -1.47 Total: -3.38 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -24.66 -8.28 -32.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159061303.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.519 kcal (2) G-P(sol) polarization free energy of solvation -24.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds