Wall clock time and date at job start Tue Mar 31 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 109.47077 * 2 1 4 4 C 1.38388 * 120.84325 * 269.72053 * 3 2 1 5 5 Cl 1.73599 * 120.41707 * 0.24887 * 4 3 2 6 6 N 1.32635 * 119.16221 * 180.27891 * 4 3 2 7 7 C 1.31823 * 120.99919 * 359.97438 * 6 4 3 8 8 C 1.50700 * 119.06743 * 179.97438 * 7 6 4 9 9 C 1.53006 * 109.47370 * 240.02080 * 8 7 6 10 10 C 1.53002 * 109.47417 * 0.02562 * 8 7 6 11 11 C 1.53000 * 109.47286 * 120.02347 * 8 7 6 12 12 N 1.31701 * 121.86576 * 0.02562 * 7 6 4 13 13 C 1.33097 * 120.71952 * 359.97438 * 12 7 6 14 14 N 1.38545 * 120.52937 * 180.02562 * 13 12 7 15 15 C 1.36938 * 119.99415 * 359.97438 * 14 13 12 16 16 H 1.07994 * 120.00050 * 359.97438 * 15 14 13 17 17 C 1.38850 * 119.99481 * 180.02562 * 15 14 13 18 18 N 1.31540 * 120.00106 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99776 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46744 * 60.00271 * 19 17 15 21 21 H 1.48502 * 109.46806 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47162 * 299.99952 * 19 17 15 23 23 H 1.09003 * 109.46699 * 299.99562 * 1 2 3 24 24 H 1.09002 * 109.47179 * 60.00084 * 1 2 3 25 25 H 1.09000 * 109.46813 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47003 * 239.99745 * 2 1 3 27 27 H 1.09002 * 109.47179 * 119.99916 * 2 1 3 28 28 H 1.08998 * 109.46368 * 59.99882 * 9 8 7 29 29 H 1.08994 * 109.47290 * 179.97438 * 9 8 7 30 30 H 1.09003 * 109.46817 * 300.00592 * 9 8 7 31 31 H 1.09003 * 109.46753 * 59.99743 * 10 8 7 32 32 H 1.08999 * 109.47163 * 180.02562 * 10 8 7 33 33 H 1.09001 * 109.46731 * 299.99968 * 10 8 7 34 34 H 1.09002 * 109.47305 * 60.00068 * 11 8 7 35 35 H 1.08999 * 109.47394 * 179.97438 * 11 8 7 36 36 H 1.09003 * 109.46960 * 299.99722 * 11 8 7 37 37 H 0.96998 * 119.99973 * 179.97438 * 14 13 12 38 38 H 0.97000 * 119.99650 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2743 2.0877 -1.1881 5 17 1.9969 1.3005 -2.7103 6 7 2.7214 3.3359 -1.1492 7 6 2.9360 3.9446 0.0002 8 6 3.4448 5.3631 -0.0064 9 6 4.7922 5.4250 0.7160 10 6 3.6185 5.8360 -1.4511 11 6 2.4405 6.2686 0.7093 12 7 2.7193 3.3479 1.1541 13 6 2.2705 2.0957 1.1983 14 7 2.0434 1.4720 2.4144 15 6 2.2813 2.1442 3.5834 16 1 2.6462 3.1602 3.5575 17 6 2.0542 1.5189 4.8022 18 7 1.6101 0.2811 4.8338 19 14 2.3793 2.4355 6.3971 20 1 1.5266 3.6500 6.4525 21 1 2.0597 1.5540 7.5486 22 1 3.8092 2.8313 6.4579 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.5077 4.7799 0.2061 29 1 5.1604 6.4509 0.7108 30 1 4.6684 5.0881 1.7452 31 1 2.6585 5.7919 -1.9656 32 1 3.9869 6.8618 -1.4558 33 1 4.3340 5.1910 -1.9610 34 1 2.3167 5.9318 1.7386 35 1 2.8087 7.2945 0.7050 36 1 1.4806 6.2245 0.1947 37 1 1.7159 0.5592 2.4376 38 1 1.4518 -0.1557 5.6852 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182882.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:36 Heat of formation + Delta-G solvation = 14.896375 kcal Electronic energy + Delta-G solvation = -20696.261124 eV Core-core repulsion = 17598.690029 eV Total energy + Delta-G solvation = -3097.571095 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.18627 -36.96433 -36.29381 -35.10246 -33.58976 -32.52072 -30.74319 -28.50201 -26.86224 -26.83654 -25.18524 -24.17713 -22.07325 -21.28639 -19.27793 -18.42859 -16.76026 -16.29390 -15.01165 -14.68025 -14.49523 -14.24253 -14.01981 -13.50338 -13.40999 -13.33419 -13.14210 -12.20469 -12.05850 -11.87564 -11.81318 -11.74518 -11.41877 -11.30941 -11.21273 -10.96849 -10.89000 -10.78414 -10.75474 -10.50866 -10.43060 -10.38577 -10.35721 -9.47722 -9.24627 -8.57704 -8.10971 -7.48419 -6.78777 -3.99123 1.88180 2.26281 2.40241 3.08837 3.11027 3.11823 3.90302 4.48607 4.51330 4.78873 5.03011 5.30425 5.45485 5.48101 5.49441 5.57782 5.83238 5.87149 5.91636 5.99075 6.05136 6.18544 6.20662 6.21285 6.28982 6.33285 6.33957 6.49065 6.53217 6.69797 6.71808 6.73183 6.86678 7.11445 7.27558 7.62649 8.01831 8.53959 8.99502 9.04078 9.52785 10.36089 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.007236 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.354223 B = 3868.479381 C = 5663.658076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.061 4.061 3 C -0.273 4.273 4 C 0.250 3.750 5 Cl -0.059 7.059 6 N -0.605 5.605 7 C 0.379 3.621 8 C 0.007 3.993 9 C -0.132 4.132 10 C -0.121 4.121 11 C -0.132 4.132 12 N -0.569 5.569 13 C 0.380 3.620 14 N -0.500 5.500 15 C -0.287 4.287 16 H 0.117 0.883 17 C 0.023 3.977 18 N -0.883 5.883 19 Si 0.939 3.061 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.269 1.269 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.410 0.590 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.072 4.078 -7.045 8.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 C -0.289 4.289 4 C 0.084 3.916 5 Cl -0.031 7.031 6 N -0.332 5.332 7 C 0.107 3.893 8 C 0.005 3.995 9 C -0.190 4.190 10 C -0.179 4.179 11 C -0.190 4.190 12 N -0.296 5.296 13 C 0.130 3.870 14 N -0.106 5.106 15 C -0.419 4.419 16 H 0.135 0.865 17 C -0.182 4.182 18 N -0.519 5.519 19 Si 0.765 3.235 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.194 1.194 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.249 0.751 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.291 4.694 -6.673 8.260 hybrid contribution -0.409 -1.157 0.641 1.385 sum 0.882 3.537 -6.032 7.048 Atomic orbital electron populations 1.21711 0.95484 1.00921 1.01896 1.20095 0.95636 0.92151 1.02098 1.20006 1.17692 0.99607 0.91639 1.21024 0.94987 0.90543 0.84998 1.98323 1.94321 1.78351 1.32123 1.67334 1.25889 1.09366 1.30661 1.22149 0.90007 0.94913 0.82255 1.19203 0.95709 0.87833 0.96771 1.21795 0.94856 1.00990 1.01357 1.21635 1.02513 0.99211 0.94512 1.21794 0.97909 0.97907 1.01387 1.67576 1.23330 1.09716 1.28980 1.17887 0.94917 0.88802 0.85437 1.41014 1.53599 1.14366 1.01669 1.20027 1.40220 0.99753 0.81896 0.86515 1.25486 0.96450 0.96003 1.00301 1.69648 1.42158 1.11536 1.28587 0.85759 0.79415 0.78976 0.79343 1.19419 1.20655 1.19417 0.92710 0.92978 0.92944 0.91316 0.91762 0.93125 0.92541 0.91243 0.92260 0.93383 0.92262 0.91251 0.92543 0.93125 0.75147 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.89 37.16 0.37 -1.95 16 2 C -0.06 -1.08 5.32 -27.88 -0.15 -1.23 16 3 C -0.27 -5.62 5.19 -104.07 -0.54 -6.16 16 4 C 0.25 5.01 7.32 -17.15 -0.13 4.88 16 5 Cl -0.06 -1.00 27.63 -51.86 -1.43 -2.43 16 6 N -0.60 -12.38 9.00 -7.92 -0.07 -12.45 16 7 C 0.38 7.71 6.25 -157.25 -0.98 6.72 16 8 C 0.01 0.12 0.92 -155.66 -0.14 -0.03 16 9 C -0.13 -2.01 8.37 37.16 0.31 -1.69 16 10 C -0.12 -1.76 7.67 37.16 0.28 -1.47 16 11 C -0.13 -2.01 8.37 37.16 0.31 -1.70 16 12 N -0.57 -12.79 8.61 -9.96 -0.09 -12.88 16 13 C 0.38 8.69 7.45 -154.70 -1.15 7.54 16 14 N -0.50 -11.96 5.34 -11.00 -0.06 -12.02 16 15 C -0.29 -7.21 9.72 -15.04 -0.15 -7.35 16 16 H 0.12 2.96 7.11 -52.49 -0.37 2.59 16 17 C 0.02 0.56 5.50 -17.45 -0.10 0.47 16 18 N -0.88 -22.25 13.05 55.49 0.72 -21.53 16 19 Si 0.94 19.25 29.55 -169.99 -5.02 14.23 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.11 7.02 -51.93 -0.36 0.75 16 27 H 0.06 1.17 6.69 -51.93 -0.35 0.82 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.16 8.01 -51.93 -0.42 0.75 16 31 H 0.06 0.90 8.04 -51.93 -0.42 0.48 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.90 8.04 -51.93 -0.42 0.48 16 34 H 0.07 1.16 8.01 -51.93 -0.42 0.75 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.41 9.70 6.03 -40.82 -0.25 9.45 16 38 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 328.86 15.07 4.96 4.96 Total: -1.00 -25.88 328.86 -8.57 -34.45 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.51 Total: 9.65 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -2.06 Total: -1.97 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: 0.51 Total: -58.88 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.43 Total: -2.43 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -25.88 -8.57 -34.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182882.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.342 kcal (2) G-P(sol) polarization free energy of solvation -25.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds