Wall clock time and date at job start Tue Mar 31 2020 06:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46880 * 2 1 4 4 C 1.52999 * 109.46963 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47071 * 180.02562 * 4 3 2 6 6 C 1.36944 * 119.99957 * 84.68642 * 5 4 3 7 7 H 1.08000 * 119.99560 * 5.10821 * 6 5 4 8 8 C 1.38849 * 119.99807 * 185.10093 * 6 5 4 9 9 N 1.31531 * 120.00109 * 354.07708 * 8 6 5 10 10 Si 1.86801 * 119.99677 * 174.34630 * 8 6 5 11 11 H 1.48501 * 109.47013 * 89.99946 * 10 8 6 12 12 H 1.48495 * 109.46972 * 210.00332 * 10 8 6 13 13 H 1.48503 * 109.47060 * 330.00276 * 10 8 6 14 14 C 1.38535 * 120.00315 * 264.69379 * 5 4 3 15 15 N 1.33097 * 120.53341 * 93.10457 * 14 5 4 16 16 C 1.31697 * 120.72403 * 179.76257 * 15 14 5 17 17 N 1.31818 * 121.86416 * 0.53433 * 16 15 14 18 18 C 1.32639 * 120.99713 * 359.72760 * 17 16 15 19 19 Cl 1.73602 * 120.41939 * 180.02562 * 18 17 16 20 20 C 1.38377 * 119.16265 * 0.02562 * 18 17 16 21 21 C 1.50702 * 120.84446 * 180.02562 * 20 18 17 22 22 C 1.52997 * 109.47323 * 275.91407 * 21 20 18 23 23 H 1.08997 * 109.47118 * 299.99326 * 1 2 3 24 24 H 1.08993 * 109.47136 * 59.99935 * 1 2 3 25 25 H 1.09003 * 109.46555 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46907 * 240.00403 * 2 1 3 27 27 H 1.08993 * 109.47136 * 120.00065 * 2 1 3 28 28 H 1.09008 * 109.46903 * 59.99956 * 3 2 1 29 29 H 1.08998 * 109.47125 * 300.00404 * 3 2 1 30 30 H 1.08997 * 109.47125 * 60.00619 * 4 3 2 31 31 H 1.08993 * 109.47046 * 300.00061 * 4 3 2 32 32 H 0.97002 * 119.99822 * 179.97438 * 9 8 6 33 33 H 1.08005 * 119.06620 * 180.26283 * 16 15 14 34 34 H 1.08997 * 109.47074 * 35.92140 * 21 20 18 35 35 H 1.09003 * 109.47172 * 155.91691 * 21 20 18 36 36 H 1.08997 * 109.47644 * 300.00384 * 22 21 20 37 37 H 1.09004 * 109.46844 * 60.00585 * 22 21 20 38 38 H 1.09007 * 109.47200 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1835 3.5052 1.1812 7 1 4.0016 2.9997 2.1181 8 6 4.5443 4.8460 1.1743 9 7 4.8790 5.4311 0.0449 10 14 4.5617 5.8167 2.7702 11 1 5.9041 5.7149 3.3969 12 1 4.2546 7.2415 2.4862 13 1 3.5400 5.2652 3.6961 14 6 4.3933 3.4406 -1.1944 15 7 3.4974 4.1733 -1.8516 16 6 3.8132 4.7652 -2.9849 17 7 5.0131 4.6516 -3.5185 18 6 5.9589 3.9345 -2.9264 19 17 7.5344 3.7955 -3.6421 20 6 5.6740 3.2986 -1.7309 21 6 6.7202 2.4747 -1.0254 22 6 6.7419 1.0635 -1.6159 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6766 1.9563 0.8901 29 1 1.6766 1.9563 -0.8899 30 1 3.9330 0.9289 -0.8909 31 1 3.9337 0.9286 0.8890 32 1 5.1308 6.3679 0.0400 33 1 3.0665 5.3569 -3.4937 34 1 7.6977 2.9388 -1.1570 35 1 6.4841 2.4202 0.0374 36 1 5.7645 0.5994 -1.4843 37 1 6.9782 1.1180 -2.6786 38 1 7.4990 0.4678 -1.1059 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167128780.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:47 Heat of formation + Delta-G solvation = 44.461889 kcal Electronic energy + Delta-G solvation = -21132.839442 eV Core-core repulsion = 18036.550404 eV Total energy + Delta-G solvation = -3096.289038 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.91712 -36.74009 -36.01668 -34.46660 -33.53795 -31.80953 -31.27557 -29.10453 -27.81286 -24.86152 -23.95486 -23.31900 -21.28241 -20.88176 -20.34260 -18.17008 -16.92349 -15.81967 -15.10135 -14.97819 -14.28174 -13.86078 -13.77239 -13.64071 -13.43912 -13.23864 -13.11910 -12.35256 -12.12657 -12.02072 -11.45886 -11.34196 -11.31000 -11.21237 -10.93967 -10.79742 -10.75169 -10.62302 -10.45839 -10.35437 -10.10437 -9.92369 -9.63753 -9.10220 -9.05869 -8.19313 -8.05875 -7.34845 -6.01569 -3.52309 2.03638 2.29955 2.50284 3.26684 3.32799 3.35148 4.22451 4.72665 4.90055 5.20246 5.24962 5.31143 5.37028 5.50397 5.59627 5.66766 5.78493 5.89411 5.94356 6.06739 6.10770 6.15655 6.21055 6.24454 6.34861 6.36132 6.44788 6.48059 6.58803 6.80340 6.87683 6.99368 7.07825 7.27749 7.48492 8.01211 8.09822 8.95617 9.30323 9.53914 9.87399 11.01297 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.011826 B = 0.008321 C = 0.006142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.033388 B = 3364.200018 C = 4557.852228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.156 3.844 5 N -0.550 5.550 6 C -0.259 4.259 7 H 0.091 0.909 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.923 3.077 11 H -0.286 1.286 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.554 3.446 15 N -0.519 5.519 16 C 0.310 3.690 17 N -0.555 5.555 18 C 0.212 3.788 19 Cl -0.063 7.063 20 C -0.159 4.159 21 C -0.066 4.066 22 C -0.143 4.143 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.264 0.736 33 H 0.176 0.824 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.530 -8.291 -2.571 8.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.178 4.178 4 C 0.031 3.969 5 N -0.269 5.269 6 C -0.386 4.386 7 H 0.109 0.891 8 C -0.195 4.195 9 N -0.546 5.546 10 Si 0.753 3.247 11 H -0.213 1.213 12 H -0.215 1.215 13 H -0.203 1.203 14 C 0.317 3.683 15 N -0.237 5.237 16 C 0.020 3.980 17 N -0.274 5.274 18 C 0.042 3.958 19 Cl -0.035 7.035 20 C -0.169 4.169 21 C -0.105 4.105 22 C -0.200 4.200 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.193 0.807 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.017 -7.580 -3.037 8.229 hybrid contribution 0.702 0.636 1.081 1.437 sum -0.315 -6.944 -1.956 7.221 Atomic orbital electron populations 1.21750 0.96484 1.00654 1.01761 1.21500 0.95412 0.97960 1.01183 1.22197 0.98039 0.94847 1.02763 1.20962 0.92269 0.83877 0.99832 1.41324 1.74370 1.10348 1.00856 1.19346 1.42725 0.92468 0.84079 0.89122 1.24869 1.00080 0.96860 0.97718 1.69145 1.48934 1.12166 1.24352 0.85941 0.77817 0.79237 0.81726 1.21297 1.21523 1.20338 1.17295 0.85426 0.81681 0.83896 1.68351 1.39071 1.09007 1.07320 1.24070 0.90142 0.94684 0.89127 1.67471 1.02409 1.20186 1.37357 1.21487 0.87513 0.95797 0.90976 1.98322 1.24344 1.96561 1.84290 1.21434 0.97918 1.02528 0.94995 1.20196 0.96033 0.93175 1.01065 1.21769 1.01220 0.96617 1.00396 0.92888 0.92986 0.93497 0.92722 0.92435 0.91653 0.92175 0.93677 0.92389 0.92306 0.80703 0.91908 0.89171 0.92988 0.93336 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.12 -1.64 5.93 -26.73 -0.16 -1.80 16 3 C -0.14 -2.37 5.51 -26.73 -0.15 -2.51 16 4 C 0.16 2.87 5.64 -4.04 -0.02 2.85 16 5 N -0.55 -12.46 1.70 -114.86 -0.20 -12.66 16 6 C -0.26 -6.39 9.48 -15.04 -0.14 -6.53 16 7 H 0.09 2.14 7.84 -52.49 -0.41 1.73 16 8 C 0.00 0.08 5.44 -17.45 -0.09 -0.02 16 9 N -0.90 -24.57 9.76 55.49 0.54 -24.03 16 10 Si 0.92 21.01 29.56 -169.99 -5.02 15.99 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 14 C 0.55 12.99 3.57 -154.71 -0.55 12.44 16 15 N -0.52 -12.40 9.71 -13.81 -0.13 -12.53 16 16 C 0.31 6.73 12.28 -92.22 -1.13 5.60 16 17 N -0.56 -12.20 10.43 -11.75 -0.12 -12.33 16 18 C 0.21 4.57 7.32 -17.15 -0.13 4.45 16 19 Cl -0.06 -1.15 27.53 -51.86 -1.43 -2.58 16 20 C -0.16 -3.48 4.68 -104.07 -0.49 -3.96 16 21 C -0.07 -1.27 5.47 -27.88 -0.15 -1.42 16 22 C -0.14 -2.24 9.89 37.16 0.37 -1.87 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.04 0.79 6.33 -51.93 -0.33 0.46 16 31 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.18 3.17 8.06 -52.48 -0.42 2.75 16 34 H 0.06 1.19 7.28 -51.93 -0.38 0.81 16 35 H 0.09 1.90 7.13 -51.93 -0.37 1.53 16 36 H 0.05 0.81 6.45 -51.93 -0.33 0.47 16 37 H 0.05 0.74 7.92 -51.93 -0.41 0.33 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -27.95 327.68 -9.30 -37.25 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.59 Total: 0.18 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -2.28 Total: 5.77 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 0.09 Total: -61.55 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.43 Total: -2.58 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.95 -9.30 -37.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128780.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.708 kcal (2) G-P(sol) polarization free energy of solvation -27.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds