Wall clock time and date at job start Tue Mar 31 2020 06:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47287 * 2 1 4 4 C 1.53000 * 109.46962 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47121 * 180.02562 * 4 3 2 6 6 C 1.36827 * 120.00255 * 275.07545 * 5 4 3 7 7 H 1.08000 * 119.99809 * 351.33007 * 6 5 4 8 8 C 1.38790 * 120.00281 * 171.32786 * 6 5 4 9 9 N 1.31600 * 119.99992 * 6.29684 * 8 6 5 10 10 Si 1.86804 * 120.00223 * 186.30221 * 8 6 5 11 11 H 1.48503 * 109.46723 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47550 * 119.99816 * 10 8 6 13 13 H 1.48497 * 109.46880 * 240.00074 * 10 8 6 14 14 C 1.39386 * 120.00130 * 95.34399 * 5 4 3 15 15 C 1.39648 * 120.89767 * 269.73118 * 14 5 4 16 16 Cl 1.73594 * 120.51984 * 359.97438 * 15 14 5 17 17 N 1.32313 * 118.95952 * 180.02562 * 15 14 5 18 18 C 1.31849 * 120.89090 * 359.97438 * 17 15 14 19 19 N 1.31797 * 121.97901 * 0.03107 * 18 17 15 20 20 C 1.32292 * 120.94999 * 359.65146 * 19 18 17 21 21 C 1.50702 * 120.49805 * 180.31373 * 20 19 18 22 22 C 1.52997 * 109.47098 * 270.30716 * 21 20 19 23 23 H 1.09000 * 109.47027 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47173 * 300.00109 * 1 2 3 25 25 H 1.09002 * 109.46654 * 59.99853 * 1 2 3 26 26 H 1.09003 * 109.46910 * 239.99941 * 2 1 3 27 27 H 1.09006 * 109.47116 * 120.00299 * 2 1 3 28 28 H 1.09003 * 109.47194 * 60.00114 * 3 2 1 29 29 H 1.09002 * 109.47394 * 299.99694 * 3 2 1 30 30 H 1.08994 * 109.47306 * 60.00623 * 4 3 2 31 31 H 1.08999 * 109.47673 * 299.99992 * 4 3 2 32 32 H 0.96998 * 120.00021 * 180.02562 * 9 8 6 33 33 H 1.07997 * 119.00903 * 179.97438 * 18 17 15 34 34 H 1.08998 * 109.46988 * 30.30756 * 21 20 19 35 35 H 1.08997 * 109.47309 * 150.30384 * 21 20 19 36 36 H 1.08998 * 109.47233 * 299.99890 * 22 21 20 37 37 H 1.09005 * 109.47029 * 59.99680 * 22 21 20 38 38 H 1.08998 * 109.47067 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8236 0.0013 6 6 4.1882 3.5039 -1.1788 7 1 4.0665 2.9844 -2.1178 8 6 4.4762 4.8616 -1.1690 9 7 4.7467 5.4687 -0.0332 10 14 4.4798 5.8272 -2.7682 11 1 4.1474 4.9192 -3.8953 12 1 3.4702 6.9135 -2.6928 13 1 5.8252 6.4161 -2.9878 14 6 4.3963 3.4428 1.2034 15 6 3.4466 4.1638 1.9304 16 17 1.8163 4.3073 1.3517 17 7 3.8092 4.7367 3.0666 18 6 5.0456 4.6328 3.5127 19 7 5.9705 3.9616 2.8561 20 6 5.6890 3.3540 1.7152 21 6 6.7527 2.5833 0.9764 22 6 7.4792 3.5179 0.0071 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 3.9337 0.9285 -0.8891 31 1 3.9331 0.9287 0.8908 32 1 4.9476 6.4177 -0.0264 33 1 5.3086 5.1130 4.4436 34 1 7.4671 2.1741 1.6907 35 1 6.2902 1.7693 0.4184 36 1 6.7648 3.9271 -0.7073 37 1 7.9417 4.3320 0.5652 38 1 8.2488 2.9606 -0.5269 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129002.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:59 Heat of formation + Delta-G solvation = 42.753927 kcal Electronic energy + Delta-G solvation = -21509.755091 eV Core-core repulsion = 18413.391990 eV Total energy + Delta-G solvation = -3096.363101 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.91698 -36.72079 -35.59122 -34.47283 -33.51389 -31.52890 -31.03324 -29.35806 -27.65116 -24.63304 -24.02354 -23.27310 -21.22342 -20.83315 -20.36068 -17.70800 -16.83884 -16.05580 -15.34834 -14.96909 -14.14854 -13.96012 -13.68462 -13.42065 -13.39923 -12.95196 -12.69672 -12.48383 -12.15428 -11.73994 -11.44218 -11.25617 -11.14655 -10.94862 -10.91708 -10.70158 -10.64227 -10.61750 -10.33547 -10.13126 -9.97995 -9.77190 -9.65345 -9.23628 -8.97464 -8.28602 -7.95094 -7.18980 -5.84148 -3.46318 2.16753 2.21428 2.94849 3.27539 3.34244 3.37436 4.27250 4.82220 4.92846 5.13179 5.25876 5.33310 5.38323 5.44065 5.52907 5.82740 5.86757 6.02014 6.09090 6.14112 6.19995 6.23763 6.27266 6.33521 6.38344 6.47080 6.57322 6.61098 6.82096 6.85197 6.96568 7.08804 7.36335 7.38751 7.51515 7.90805 8.10362 9.00993 9.18074 9.52926 9.91483 11.04437 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.012625 B = 0.009352 C = 0.007866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.359431 B = 2993.168245 C = 3558.774876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.145 4.145 4 C 0.154 3.846 5 N -0.554 5.554 6 C -0.248 4.248 7 H 0.088 0.912 8 C 0.007 3.993 9 N -0.900 5.900 10 Si 0.910 3.090 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.290 1.290 14 C 0.237 3.763 15 C 0.227 3.773 16 Cl -0.045 7.045 17 N -0.533 5.533 18 C 0.259 3.741 19 N -0.522 5.522 20 C 0.155 3.845 21 C -0.048 4.048 22 C -0.136 4.136 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.041 0.959 32 H 0.261 0.739 33 H 0.177 0.823 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.042 0.958 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.805 -7.528 1.420 7.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.184 4.184 4 C 0.029 3.971 5 N -0.271 5.271 6 C -0.375 4.375 7 H 0.105 0.895 8 C -0.191 4.191 9 N -0.544 5.544 10 Si 0.740 3.260 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.217 1.217 14 C 0.136 3.864 15 C 0.052 3.948 16 Cl -0.017 7.017 17 N -0.251 5.251 18 C -0.029 4.029 19 N -0.238 5.238 20 C 0.007 3.993 21 C -0.086 4.086 22 C -0.194 4.194 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.194 0.806 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.061 0.939 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.658 -6.894 2.149 7.409 hybrid contribution -0.478 0.763 -1.577 1.816 sum -2.136 -6.131 0.572 6.518 Atomic orbital electron populations 1.21748 0.96584 1.00614 1.01695 1.21500 0.95316 0.98108 1.01118 1.22343 0.98154 0.94853 1.03088 1.20921 0.92337 0.84301 0.99556 1.41390 1.73802 1.10642 1.01299 1.19340 1.43131 0.90775 0.84240 0.89462 1.24786 1.00614 0.96550 0.97144 1.69535 1.50914 1.10475 1.23503 0.86076 0.77376 0.80153 0.82419 1.20280 1.21506 1.21654 1.17876 0.90661 0.90987 0.86901 1.22883 0.87142 0.94139 0.90669 1.98311 1.19667 1.96306 1.87374 1.67325 1.21109 1.22026 1.14640 1.23937 0.83629 0.96251 0.99041 1.67803 1.36893 1.10318 1.08747 1.21855 0.93019 0.94197 0.90192 1.20101 0.94582 0.97246 0.96711 1.21633 0.99837 0.98385 0.99567 0.93532 0.93031 0.92954 0.92527 0.92758 0.91744 0.91635 0.92669 0.94024 0.92690 0.80623 0.92359 0.90717 0.89277 0.93895 0.94299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.12 -1.63 5.93 -26.73 -0.16 -1.79 16 3 C -0.14 -2.41 5.00 -26.73 -0.13 -2.54 16 4 C 0.15 2.75 5.24 -4.04 -0.02 2.73 16 5 N -0.55 -11.89 1.24 -112.88 -0.14 -12.03 16 6 C -0.25 -5.76 9.12 -15.12 -0.14 -5.90 16 7 H 0.09 2.00 7.84 -52.49 -0.41 1.59 16 8 C 0.01 0.17 4.12 -17.45 -0.07 0.09 16 9 N -0.90 -23.17 9.16 55.49 0.51 -22.66 16 10 Si 0.91 20.47 29.56 -169.99 -5.02 15.44 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 14 C 0.24 5.36 2.86 -83.50 -0.24 5.12 16 15 C 0.23 5.25 6.04 -16.82 -0.10 5.15 16 16 Cl -0.04 -0.97 26.04 -51.86 -1.35 -2.32 16 17 N -0.53 -12.07 10.43 -11.48 -0.12 -12.19 16 18 C 0.26 5.41 12.28 -92.11 -1.13 4.28 16 19 N -0.52 -11.32 10.37 -10.62 -0.11 -11.43 16 20 C 0.15 3.39 5.63 -81.99 -0.46 2.93 16 21 C -0.05 -0.93 6.05 -27.88 -0.17 -1.10 16 22 C -0.14 -2.68 9.89 37.16 0.37 -2.31 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.17 5.86 -51.93 -0.30 0.86 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.04 0.71 8.00 -51.93 -0.42 0.30 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.18 2.99 8.06 -52.49 -0.42 2.56 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.39 7.16 -51.93 -0.37 1.02 16 36 H 0.09 2.01 5.71 -51.93 -0.30 1.71 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 322.49 15.07 4.86 4.86 Total: -1.00 -26.33 322.49 -8.85 -35.18 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.58 Total: -0.05 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -1.89 Total: 5.21 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.14 Total: -58.31 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.35 Total: -2.32 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.33 -8.85 -35.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129002.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.929 kcal (2) G-P(sol) polarization free energy of solvation -26.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds