Wall clock time and date at job start Tue Mar 31 2020 06:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47098 * 2 1 4 4 C 1.53002 * 109.46962 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47058 * 185.65425 * 4 3 2 6 6 C 1.36822 * 119.99846 * 86.63360 * 5 4 3 7 7 H 1.07998 * 119.99629 * 350.16701 * 6 5 4 8 8 C 1.38793 * 119.99919 * 170.17102 * 6 5 4 9 9 N 1.31595 * 120.00074 * 10.87690 * 8 6 5 10 10 Si 1.86802 * 120.00102 * 190.87704 * 8 6 5 11 11 H 1.48500 * 109.46890 * 94.93497 * 10 8 6 12 12 H 1.48493 * 109.47083 * 214.93464 * 10 8 6 13 13 H 1.48490 * 109.46971 * 334.93573 * 10 8 6 14 14 C 1.39382 * 119.99588 * 266.63315 * 5 4 3 15 15 C 1.39358 * 120.89012 * 272.91593 * 14 5 4 16 16 C 1.50697 * 120.49964 * 359.96441 * 15 14 5 17 17 N 1.32273 * 119.00190 * 179.97438 * 15 14 5 18 18 C 1.31824 * 120.94383 * 0.02562 * 17 15 14 19 19 C 1.50706 * 119.00297 * 179.97438 * 18 17 15 20 20 N 1.31814 * 121.98819 * 0.02562 * 18 17 15 21 21 C 1.32354 * 120.88758 * 359.67734 * 20 18 17 22 22 Cl 1.73598 * 120.51680 * 180.28958 * 21 20 18 23 23 H 1.09007 * 109.46937 * 59.99879 * 1 2 3 24 24 H 1.08996 * 109.47413 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47259 * 300.00081 * 1 2 3 26 26 H 1.08998 * 109.47259 * 239.99918 * 2 1 3 27 27 H 1.09004 * 109.47163 * 119.99642 * 2 1 3 28 28 H 1.09007 * 109.46930 * 60.00058 * 3 2 1 29 29 H 1.08993 * 109.47533 * 299.99772 * 3 2 1 30 30 H 1.08992 * 109.47444 * 305.65804 * 4 3 2 31 31 H 1.09003 * 109.46789 * 65.65532 * 4 3 2 32 32 H 0.97001 * 120.00434 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.46920 * 91.74434 * 16 15 14 34 34 H 1.09008 * 109.46938 * 211.73958 * 16 15 14 35 35 H 1.08995 * 109.47361 * 331.74113 * 16 15 14 36 36 H 1.08997 * 109.46836 * 90.00548 * 19 18 17 37 37 H 1.09004 * 109.46422 * 209.99895 * 19 18 17 38 38 H 1.08990 * 109.47200 * 329.99992 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8170 0.1367 6 6 4.2202 3.3656 1.3797 7 1 3.8420 2.8507 2.2505 8 6 4.8703 4.5836 1.5213 9 7 5.1405 5.3127 0.4596 10 14 5.3619 5.1881 3.2191 11 1 6.7705 4.8053 3.4921 12 1 5.2307 6.6662 3.2754 13 1 4.4752 4.5733 4.2393 14 6 4.3579 3.5658 -1.0000 15 6 5.6199 3.5008 -1.5875 16 6 6.6910 2.6165 -1.0030 17 7 5.8635 4.2270 -2.6659 18 6 4.9333 5.0040 -3.1842 19 6 5.2585 5.8131 -4.4134 20 7 3.7276 5.0954 -2.6593 21 6 3.4003 4.3975 -1.5834 22 17 1.8072 4.5195 -0.9045 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8901 29 1 1.6767 1.9564 -0.8899 30 1 3.9330 0.8436 0.8358 31 1 3.9336 1.0187 -0.9355 32 1 5.5945 6.1641 0.5586 33 1 6.6525 1.6364 -1.4784 34 1 7.6685 3.0665 -1.1768 35 1 6.5268 2.5070 0.0690 36 1 5.0200 5.2323 -5.3043 37 1 4.6707 6.7311 -4.4100 38 1 6.3198 6.0612 -4.4147 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129154.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:03 Heat of formation + Delta-G solvation = 42.214865 kcal Electronic energy + Delta-G solvation = -21218.496382 eV Core-core repulsion = 18122.109905 eV Total energy + Delta-G solvation = -3096.386477 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.92015 -36.79043 -35.53860 -34.44256 -32.97573 -31.66819 -31.17247 -28.40806 -28.04882 -26.58921 -24.31126 -22.58357 -21.65193 -20.85569 -20.26430 -17.68262 -16.90618 -15.46010 -15.25287 -14.97187 -14.25157 -14.10348 -13.66554 -13.56563 -12.99266 -12.56610 -12.49521 -12.22216 -12.10995 -11.99484 -11.74551 -11.47179 -11.46391 -11.09625 -10.98066 -10.88697 -10.83963 -10.68864 -10.57836 -10.29606 -10.02501 -9.87278 -9.72304 -9.15433 -8.98649 -8.31713 -7.82848 -7.19746 -5.86549 -3.47161 2.17257 2.23275 2.95851 3.27075 3.33063 3.36175 4.26315 4.76753 4.90150 5.04993 5.21360 5.30496 5.32298 5.42957 5.51542 5.82429 5.92568 6.04308 6.08199 6.08502 6.12791 6.19835 6.22280 6.27722 6.30169 6.37722 6.39001 6.49739 6.58645 6.80217 6.86832 6.97021 7.10805 7.44659 7.51495 7.91534 8.12707 8.99278 9.22123 9.52033 9.90355 11.01823 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.011670 B = 0.009518 C = 0.006935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.834459 B = 2941.217349 C = 4036.717909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.142 4.142 4 C 0.153 3.847 5 N -0.551 5.551 6 C -0.249 4.249 7 H 0.088 0.912 8 C 0.003 3.997 9 N -0.897 5.897 10 Si 0.916 3.084 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.228 3.772 15 C 0.175 3.825 16 C -0.084 4.084 17 N -0.522 5.522 18 C 0.277 3.723 19 C -0.067 4.067 20 N -0.525 5.525 21 C 0.203 3.797 22 Cl -0.048 7.048 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.262 0.738 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.471 -6.601 -3.653 7.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.182 4.182 4 C 0.028 3.972 5 N -0.268 5.268 6 C -0.376 4.376 7 H 0.106 0.894 8 C -0.196 4.196 9 N -0.541 5.541 10 Si 0.746 3.254 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.125 3.875 15 C 0.026 3.974 16 C -0.142 4.142 17 N -0.239 5.239 18 C 0.010 3.990 19 C -0.126 4.126 20 N -0.243 5.243 21 C 0.029 3.971 22 Cl -0.020 7.020 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.315 -5.896 -4.296 7.654 hybrid contribution -0.225 0.406 1.810 1.869 sum -2.541 -5.490 -2.486 6.540 Atomic orbital electron populations 1.21749 0.96564 1.00646 1.01696 1.21491 0.95314 0.97973 1.01214 1.22299 0.98230 0.94954 1.02712 1.20927 0.92204 0.84531 0.99513 1.41451 1.74858 1.09370 1.01081 1.19372 1.31173 1.03803 0.83303 0.89392 1.24889 0.99717 0.97190 0.97773 1.69595 1.44589 1.12916 1.26961 0.86020 0.78588 0.77905 0.82907 1.21266 1.21740 1.20335 1.17943 0.90909 0.91143 0.87477 1.21736 0.92731 0.93179 0.89737 1.20453 0.95589 0.96104 1.02056 1.67681 1.35393 1.08608 1.12220 1.22241 0.84529 0.95273 0.96970 1.20270 1.02041 0.98210 0.92044 1.67100 1.21444 1.23745 1.12018 1.22894 0.87449 0.95441 0.91352 1.98307 1.23228 1.96983 1.83491 0.93045 0.93492 0.92940 0.92704 0.92410 0.91588 0.92257 0.92367 0.94000 0.92632 0.92280 0.91908 0.89214 0.91328 0.90885 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.15 0.37 -1.46 16 2 C -0.12 -1.63 5.93 -26.73 -0.16 -1.79 16 3 C -0.14 -2.39 4.82 -26.73 -0.13 -2.52 16 4 C 0.15 2.79 5.66 -4.04 -0.02 2.77 16 5 N -0.55 -12.19 1.20 -112.88 -0.14 -12.32 16 6 C -0.25 -5.99 9.43 -15.12 -0.14 -6.14 16 7 H 0.09 2.07 7.85 -52.49 -0.41 1.65 16 8 C 0.00 0.07 5.43 -17.45 -0.09 -0.03 16 9 N -0.90 -24.07 9.49 55.49 0.53 -23.54 16 10 Si 0.92 20.74 29.57 -169.99 -5.03 15.72 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 C 0.23 5.32 2.85 -83.50 -0.24 5.08 16 15 C 0.18 3.98 5.87 -81.99 -0.48 3.50 16 16 C -0.08 -1.66 10.03 36.00 0.36 -1.30 16 17 N -0.52 -11.73 10.26 -6.81 -0.07 -11.80 16 18 C 0.28 6.04 7.64 -157.15 -1.20 4.84 16 19 C -0.07 -1.10 10.31 36.01 0.37 -0.73 16 20 N -0.52 -12.30 10.32 -7.66 -0.08 -12.38 16 21 C 0.20 4.85 6.63 -16.82 -0.11 4.74 16 22 Cl -0.05 -1.07 26.55 -51.86 -1.38 -2.44 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.07 6.66 -51.93 -0.35 0.73 16 30 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16 31 H 0.04 0.73 8.02 -51.93 -0.42 0.31 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 35 H 0.09 1.88 7.21 -51.93 -0.37 1.51 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 328.92 15.07 4.96 4.96 Total: -1.00 -27.92 328.92 -8.44 -36.35 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.75 Total: -1.50 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -1.48 Total: 6.97 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.24 Total: -60.05 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.72 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.38 Total: -2.44 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.92 -8.44 -36.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129154.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.567 kcal (2) G-P(sol) polarization free energy of solvation -27.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds